Wall clock time and date at job start Wed Apr 1 2020 04:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47312 * 41.91986 * 3 2 1 5 5 C 1.50700 * 112.90362 * 316.03044 * 4 3 2 6 6 O 1.21275 * 120.00308 * 103.72434 * 5 4 3 7 7 N 1.34781 * 120.00336 * 283.72016 * 5 4 3 8 8 C 1.46932 * 120.62637 * 5.24667 * 7 5 4 9 9 C 1.53193 * 108.77498 * 126.36928 * 8 7 5 10 10 C 1.53035 * 109.31150 * 54.63306 * 9 8 7 11 11 C 1.53047 * 109.53867 * 298.63454 * 10 9 8 12 12 H 1.08993 * 109.49601 * 301.37812 * 11 10 9 13 13 N 1.46898 * 109.49615 * 181.31523 * 11 10 9 14 14 C 1.46909 * 111.00190 * 85.00152 * 13 11 10 15 15 C 1.50694 * 109.47548 * 180.02562 * 14 13 11 16 16 O 1.21293 * 119.99953 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00310 * 180.02562 * 15 14 13 18 18 C 1.37090 * 120.00497 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99797 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00382 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99825 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00202 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47127 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47355 * 120.00029 * 22 20 18 25 25 H 1.48500 * 109.47186 * 240.00171 * 22 20 18 26 26 C 1.46912 * 120.63427 * 184.96838 * 7 5 4 27 27 C 1.53773 * 113.61348 * 184.78021 * 4 3 2 28 28 C 1.53778 * 87.17498 * 270.83967 * 27 4 3 29 29 C 1.53774 * 113.61477 * 87.28157 * 4 3 2 30 30 H 4.44653 * 5.63301 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.47005 * 281.91448 * 3 2 1 32 32 H 1.09002 * 109.47078 * 161.92232 * 3 2 1 33 33 H 1.08997 * 109.58890 * 246.15763 * 8 7 5 34 34 H 1.09001 * 109.58514 * 6.58144 * 8 7 5 35 35 H 1.08996 * 109.49853 * 174.58427 * 9 8 7 36 36 H 1.09002 * 109.49484 * 294.64928 * 9 8 7 37 37 H 1.09000 * 109.46224 * 58.65310 * 10 9 8 38 38 H 1.09003 * 109.46320 * 178.61763 * 10 9 8 39 39 H 1.00899 * 111.00449 * 208.95132 * 13 11 10 40 40 H 1.09000 * 109.46929 * 300.00550 * 14 13 11 41 41 H 1.09000 * 109.46794 * 59.99689 * 14 13 11 42 42 H 0.97003 * 119.99434 * 359.97438 * 17 15 14 43 43 H 0.96997 * 119.99709 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.58990 * 353.41965 * 26 7 5 45 45 H 1.09004 * 109.59390 * 113.84492 * 26 7 5 46 46 H 1.09005 * 113.61785 * 25.43428 * 27 4 3 47 47 H 1.09002 * 113.61737 * 156.24978 * 27 4 3 48 48 H 1.08997 * 113.61460 * 89.15743 * 28 27 4 49 49 H 1.09001 * 113.61736 * 220.06042 * 28 27 4 50 50 H 1.08996 * 113.61458 * 203.66648 * 29 4 3 51 51 H 1.09004 * 113.61802 * 334.48328 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0724 -0.9637 5 6 2.4107 -2.3759 -0.8385 6 8 1.5849 -2.6846 -1.6714 7 7 2.6613 -3.1989 0.1991 8 6 3.5731 -2.7893 1.2760 9 6 2.8504 -2.9407 2.6182 10 6 2.3235 -4.3714 2.7508 11 6 1.3222 -4.6541 1.6284 12 1 0.5024 -3.9380 1.6833 13 7 0.7934 -6.0168 1.7749 14 6 -0.3411 -6.0439 2.7078 15 6 -0.8552 -7.4549 2.8327 16 8 -0.3287 -8.3499 2.2059 17 7 -1.9007 -7.7222 3.6402 18 6 -2.3688 -9.0057 3.7534 19 1 -1.9000 -9.8027 3.1953 20 6 -3.4463 -9.2814 4.5863 21 7 -4.0170 -8.3116 5.2651 22 14 -4.0836 -11.0304 4.7411 23 1 -3.2742 -11.9302 3.8806 24 1 -3.9787 -11.4722 6.1550 25 1 -5.5042 -11.0795 4.3113 26 6 2.0233 -4.5199 0.2778 27 6 4.6857 -1.2340 -0.9516 28 6 4.7321 -0.1556 -2.0469 29 6 3.2986 -0.5808 -2.4138 30 1 -1.0499 -0.0003 0.0000 31 1 3.0094 -0.2113 1.0055 32 1 3.0089 0.9778 -0.3189 33 1 4.4598 -3.4232 1.2649 34 1 3.8637 -1.7486 1.1327 35 1 3.5457 -2.7323 3.4313 36 1 2.0168 -2.2398 2.6636 37 1 3.1551 -5.0726 2.6806 38 1 1.8301 -4.4888 3.7156 39 1 0.5342 -6.4024 0.8792 40 1 -0.0160 -5.6881 3.6855 41 1 -1.1357 -5.3991 2.3323 42 1 -2.3219 -7.0063 4.1412 43 1 -4.7694 -8.5039 5.8462 44 1 1.2916 -4.6208 -0.5238 45 1 2.7810 -5.2979 0.1837 46 1 5.1500 -0.9254 -0.0149 47 1 5.0240 -2.2138 -1.2889 48 1 4.7999 0.8600 -1.6571 49 1 5.4628 -0.3593 -2.8296 50 1 3.2577 -1.3814 -3.1522 51 1 2.6421 0.2543 -2.6581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208318640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:48 Heat of formation + Delta-G solvation = -18.358448 kcal Electronic energy + Delta-G solvation = -30938.589299 eV Core-core repulsion = 26838.946437 eV Total energy + Delta-G solvation = -4099.642862 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11058 -40.34715 -39.55552 -38.35441 -36.42172 -35.79163 -34.65031 -33.35183 -33.20440 -31.54144 -30.00142 -28.01871 -27.18635 -26.66821 -25.95982 -24.96561 -23.54827 -21.89185 -21.19263 -20.51272 -19.97142 -19.89992 -19.15296 -17.98711 -17.59290 -17.32311 -16.94995 -16.53276 -16.51258 -16.20275 -15.80178 -15.62531 -15.56680 -15.38574 -15.12678 -14.85319 -14.56518 -14.23547 -14.17649 -13.95625 -13.69374 -13.56633 -13.42232 -13.29453 -13.25727 -12.92264 -12.71223 -12.44081 -12.43184 -12.21844 -12.13100 -11.89370 -11.85871 -11.79755 -11.66612 -11.54483 -11.33081 -11.04875 -10.97913 -10.54565 -10.39971 -10.05413 -9.72993 -9.45113 -8.49746 -5.98838 1.34619 1.40018 1.54440 1.55753 1.80057 1.85418 1.91083 1.99848 2.27305 2.87214 3.16826 3.26046 3.31018 3.40681 3.62822 3.72266 3.79577 3.81445 3.88414 3.99275 4.02136 4.07952 4.22435 4.25420 4.37795 4.44914 4.49253 4.55959 4.61942 4.65591 4.69655 4.74930 4.80182 4.83388 4.88291 4.98007 5.02334 5.04897 5.10348 5.16299 5.19621 5.23561 5.35135 5.38813 5.46095 5.50986 5.83282 6.03386 6.24654 6.40026 6.55781 6.67359 7.08831 7.14101 7.51199 8.06234 8.67947 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.002003 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.239843 B =13975.370201 C =14200.330787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.207 4.207 3 C 0.016 3.984 4 C -0.103 4.103 5 C 0.525 3.475 6 O -0.591 6.591 7 N -0.602 5.602 8 C 0.095 3.905 9 C -0.129 4.129 10 C -0.107 4.107 11 C 0.082 3.918 12 H 0.033 0.967 13 N -0.669 5.669 14 C 0.068 3.932 15 C 0.438 3.562 16 O -0.621 6.621 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.271 1.271 26 C 0.115 3.885 27 C -0.117 4.117 28 C -0.125 4.125 29 C -0.124 4.124 30 H 0.224 0.776 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.342 0.658 40 H 0.106 0.894 41 H 0.057 0.943 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.082 0.918 48 H 0.110 0.890 49 H 0.080 0.920 50 H 0.063 0.937 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.562 24.240 -6.898 32.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.207 4.207 3 C -0.020 4.020 4 C -0.106 4.106 5 C 0.315 3.685 6 O -0.471 6.471 7 N -0.334 5.334 8 C -0.025 4.025 9 C -0.167 4.167 10 C -0.145 4.145 11 C -0.028 4.028 12 H 0.051 0.949 13 N -0.301 5.301 14 C -0.064 4.064 15 C 0.226 3.774 16 O -0.508 6.508 17 N -0.209 5.209 18 C -0.463 4.463 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.008 4.008 27 C -0.154 4.154 28 C -0.162 4.162 29 C -0.162 4.162 30 H 0.241 0.759 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.161 0.839 40 H 0.124 0.876 41 H 0.075 0.925 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.133 0.867 47 H 0.100 0.900 48 H 0.128 0.872 49 H 0.099 0.901 50 H 0.082 0.918 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.795 23.295 -7.136 32.031 hybrid contribution -2.475 -0.656 -0.348 2.584 sum 18.321 22.639 -7.484 30.070 Atomic orbital electron populations 1.25507 0.97143 1.00490 1.00782 1.23569 0.95601 1.00849 1.00635 1.18812 0.83400 0.99453 1.00297 1.22228 0.97731 0.91299 0.99347 1.21100 0.81481 0.85890 0.80004 1.90664 1.36192 1.76449 1.43801 1.48100 1.46122 1.15986 1.23178 1.22337 0.92056 1.03246 0.84906 1.21948 1.01158 0.95561 0.98064 1.21546 0.98371 0.97523 0.97077 1.21775 0.96822 0.88132 0.96064 0.94871 1.60181 1.33950 1.20451 1.15556 1.21543 0.92823 0.92561 0.99486 1.20760 0.82231 0.91599 0.82827 1.90491 1.60980 1.49191 1.50114 1.41930 1.28778 1.09761 1.40455 1.19709 1.14035 0.86440 1.26128 0.90283 1.26084 0.96235 1.03735 0.95346 1.69682 1.23982 1.33789 1.28640 0.84843 0.78012 0.76922 0.78377 1.19788 1.19396 1.19595 1.21405 0.97809 0.85281 0.96351 1.23148 0.89693 1.00580 1.02013 1.22899 0.94701 0.99981 0.98662 1.22923 0.99171 1.00629 0.93510 0.75935 0.86239 0.85396 0.89155 0.86521 0.87184 0.92286 0.90844 0.92079 0.83937 0.87575 0.92520 0.77001 0.91237 0.92034 0.89985 0.86703 0.89982 0.87165 0.90133 0.91796 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.89 19.25 74.32 1.43 -3.46 16 2 C -0.21 -4.12 12.25 31.12 0.38 -3.74 16 3 C 0.02 0.18 4.89 28.79 0.14 0.32 16 4 C -0.10 -1.45 0.37 -52.41 -0.02 -1.47 16 5 C 0.53 12.47 5.50 87.66 0.48 12.95 16 6 O -0.59 -20.36 15.85 -3.01 -0.05 -20.41 16 7 N -0.60 -12.23 2.98 -819.74 -2.44 -14.67 16 8 C 0.10 1.08 5.46 86.36 0.47 1.55 16 9 C -0.13 -1.66 6.08 30.67 0.19 -1.47 16 10 C -0.11 -2.18 5.40 30.62 0.17 -2.02 16 11 C 0.08 2.16 2.63 44.85 0.12 2.28 16 12 H 0.03 0.95 7.80 -2.39 -0.02 0.93 16 13 N -0.67 -22.56 5.94 -495.91 -2.94 -25.50 16 14 C 0.07 2.51 5.97 85.55 0.51 3.02 16 15 C 0.44 21.69 7.82 87.66 0.69 22.37 16 16 O -0.62 -35.54 15.78 -3.07 -0.05 -35.59 16 17 N -0.57 -30.27 5.29 -307.00 -1.62 -31.90 16 18 C -0.33 -19.39 9.68 84.04 0.81 -18.57 16 19 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 20 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 21 N -0.92 -50.42 13.05 21.66 0.28 -50.14 16 22 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 C 0.12 2.95 5.68 86.22 0.49 3.44 16 27 C -0.12 -0.80 5.53 31.12 0.17 -0.63 16 28 C -0.13 -0.79 7.75 31.18 0.24 -0.55 16 29 C -0.12 -1.85 6.83 31.18 0.21 -1.63 16 30 H 0.22 3.99 7.80 -4.42 -0.03 3.96 16 31 H 0.12 0.71 6.34 -2.39 -0.02 0.69 16 32 H 0.13 0.70 7.39 -2.39 -0.02 0.68 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.12 0.67 2.98 -2.39 -0.01 0.66 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.34 7.43 -2.39 -0.02 1.33 16 39 H 0.34 12.48 8.06 -89.69 -0.72 11.75 16 40 H 0.11 3.48 7.42 -2.39 -0.02 3.46 16 41 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 42 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 43 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 44 H 0.06 1.93 7.00 -2.39 -0.02 1.91 16 45 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 46 H 0.11 0.05 7.18 -2.38 -0.02 0.03 16 47 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 48 H 0.11 0.21 7.72 -2.39 -0.02 0.19 16 49 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.06 1.27 7.93 -2.39 -0.02 1.25 16 51 H 0.07 1.07 8.10 -2.38 -0.02 1.05 16 Total: -1.00 -80.32 407.85 1.66 -78.67 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -0.50 Total: 41.77 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 6.95 Total: 12.07 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -6.72 Total: -122.20 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -0.10 Total: -56.00 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -80.32 1.66 -78.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208318640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.310 kcal (2) G-P(sol) polarization free energy of solvation -80.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds