Wall clock time and date at job start Wed Apr 1 2020 04:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46688 * 171.41012 * 3 2 1 5 5 C 1.50704 * 112.84799 * 53.91872 * 4 3 2 6 6 O 1.21285 * 119.99812 * 246.67749 * 5 4 3 7 7 N 1.34775 * 120.00339 * 66.67777 * 5 4 3 8 8 C 1.46925 * 120.62646 * 5.16986 * 7 5 4 9 9 C 1.52765 * 109.00696 * 233.57827 * 8 7 5 10 10 C 1.53040 * 109.38715 * 305.59464 * 9 8 7 11 11 C 1.53040 * 109.53956 * 61.23298 * 10 9 8 12 12 H 1.09002 * 109.49583 * 58.59041 * 11 10 9 13 13 N 1.46896 * 109.52558 * 178.67173 * 11 10 9 14 14 C 1.46895 * 110.99889 * 274.85678 * 13 11 10 15 15 C 1.50703 * 109.47403 * 179.97438 * 14 13 11 16 16 O 1.21289 * 119.99857 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00254 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00029 * 180.02562 * 17 15 14 19 19 H 1.08006 * 119.99745 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00349 * 180.02562 * 18 17 15 21 21 N 1.31403 * 120.00409 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99489 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46951 * 90.00311 * 22 20 18 24 24 H 1.48502 * 109.47051 * 209.99977 * 22 20 18 25 25 H 1.48502 * 109.47309 * 330.00438 * 22 20 18 26 26 C 1.46920 * 120.63100 * 185.44194 * 7 5 4 27 27 C 1.53788 * 113.61187 * 185.10938 * 4 3 2 28 28 C 1.53780 * 87.07850 * 89.20541 * 27 4 3 29 29 C 1.53775 * 113.69389 * 282.64712 * 4 3 2 30 30 H 4.44642 * 5.63390 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.46925 * 51.41761 * 3 2 1 32 32 H 1.08997 * 109.47117 * 291.41244 * 3 2 1 33 33 H 1.08996 * 109.58840 * 353.41607 * 8 7 5 34 34 H 1.08995 * 109.58790 * 113.84319 * 8 7 5 35 35 H 1.08998 * 109.56472 * 185.55309 * 9 8 7 36 36 H 1.08999 * 109.38194 * 65.51731 * 9 8 7 37 37 H 1.09003 * 109.45595 * 301.21805 * 10 9 8 38 38 H 1.08990 * 109.46133 * 181.25667 * 10 9 8 39 39 H 1.00902 * 111.00225 * 150.90378 * 13 11 10 40 40 H 1.08998 * 109.47155 * 299.99813 * 14 13 11 41 41 H 1.08999 * 109.47553 * 59.99786 * 14 13 11 42 42 H 0.96994 * 120.00089 * 0.02562 * 17 15 14 43 43 H 0.96998 * 120.00124 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.59190 * 246.15233 * 26 7 5 45 45 H 1.09001 * 109.58804 * 6.44903 * 26 7 5 46 46 H 1.08997 * 113.61204 * 334.65219 * 27 4 3 47 47 H 1.09003 * 113.68716 * 203.76467 * 27 4 3 48 48 H 1.09001 * 113.61408 * 139.97971 * 28 27 4 49 49 H 1.09005 * 113.61087 * 270.88065 * 28 27 4 50 50 H 1.09003 * 113.61568 * 156.32658 * 29 4 3 51 51 H 1.08994 * 113.61569 * 25.42170 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4272 -0.2155 5 6 2.5787 2.4097 0.7712 6 8 1.8289 3.2832 0.3895 7 7 2.8962 2.3176 2.0778 8 6 3.8892 1.3381 2.5396 9 6 3.2732 0.4919 3.6523 10 6 2.7378 1.4112 4.7524 11 6 1.6499 2.3200 4.1756 12 1 0.8471 1.7093 3.7625 13 7 1.1140 3.1802 5.2390 14 6 0.0513 2.4940 5.9857 15 6 -0.4724 3.4050 7.0660 16 8 -0.0065 4.5168 7.2002 17 7 -1.4591 2.9848 7.8822 18 6 -1.9358 3.8138 8.8646 19 1 -1.5203 4.8035 8.9846 20 6 -2.9527 3.3805 9.7065 21 7 -3.4093 4.1749 10.6484 22 14 -3.6708 1.6685 9.4993 23 1 -2.9074 0.7071 10.3350 24 1 -5.0934 1.6735 9.9250 25 1 -3.5822 1.2638 8.0732 26 6 2.2517 3.1908 3.0681 27 6 4.6838 1.5209 -0.3564 28 6 4.4786 1.3116 -1.8660 29 6 3.0703 1.8997 -1.6764 30 1 -1.0502 -0.0004 0.0003 31 1 3.0096 -0.6401 -0.8034 32 1 3.0095 -0.3743 0.9567 33 1 4.1795 0.6932 1.7101 34 1 4.7658 1.8596 2.9237 35 1 4.0314 -0.1710 4.0691 36 1 2.4552 -0.1020 3.2445 37 1 3.5517 2.0220 5.1431 38 1 2.3180 0.8080 5.5573 39 1 0.7839 4.0565 4.8633 40 1 -0.7596 2.2323 5.3060 41 1 0.4526 1.5874 6.4386 42 1 -1.8319 2.0959 7.7747 43 1 -4.1190 3.8722 11.2363 44 1 2.9920 3.8665 3.4964 45 1 1.4635 3.7697 2.5868 46 1 5.2179 0.7042 0.1291 47 1 5.0877 2.5010 -0.1024 48 1 5.1298 1.9288 -2.4849 49 1 4.4774 0.2634 -2.1653 50 1 3.0319 2.9838 -1.7832 51 1 2.3020 1.3887 -2.2565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208318641.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:53 Heat of formation + Delta-G solvation = 13.253532 kcal Electronic energy + Delta-G solvation = -31043.265137 eV Core-core repulsion = 26944.993073 eV Total energy + Delta-G solvation = -4098.272064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43230 -39.14004 -38.32147 -37.42699 -35.22716 -34.01300 -33.88203 -32.43567 -31.67092 -30.60670 -29.31020 -26.65945 -26.45535 -26.06366 -24.69035 -23.68913 -22.72960 -21.06305 -19.87190 -19.38522 -19.23421 -18.45235 -18.33051 -17.01169 -16.58678 -16.27469 -15.83305 -15.48279 -15.27672 -15.11768 -14.98698 -14.70944 -14.41109 -14.02655 -13.92881 -13.76083 -13.60560 -13.44989 -13.07041 -12.88963 -12.82733 -12.62644 -12.44404 -12.22078 -12.13562 -11.90101 -11.66276 -11.46413 -11.34761 -11.20149 -11.15428 -10.96863 -10.85202 -10.77914 -10.59247 -10.45310 -10.36928 -9.97201 -9.75363 -9.56943 -8.87105 -8.58567 -8.21101 -8.15969 -6.30564 -3.81907 2.35014 2.51448 2.59233 2.69925 3.02677 3.06842 3.14981 3.74320 3.80760 3.91199 4.05451 4.10854 4.16103 4.26441 4.32989 4.41399 4.54051 4.65426 4.71585 4.81280 4.89121 4.95089 5.04950 5.07356 5.11407 5.18672 5.21886 5.29493 5.30474 5.38763 5.42471 5.49432 5.58440 5.58903 5.62409 5.64217 5.72713 5.77176 5.79478 5.82766 5.91191 5.92380 5.98710 6.20879 6.23248 7.06536 7.17750 7.37037 7.53432 7.58740 7.96367 8.15009 8.60242 8.95482 9.42893 9.83113 10.82567 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002177 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.411338 B =12855.738332 C =13246.756029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.197 4.197 3 C 0.015 3.985 4 C -0.103 4.103 5 C 0.534 3.466 6 O -0.535 6.535 7 N -0.605 5.605 8 C 0.099 3.901 9 C -0.138 4.138 10 C -0.109 4.109 11 C 0.076 3.924 12 H 0.045 0.955 13 N -0.660 5.660 14 C 0.050 3.950 15 C 0.451 3.549 16 O -0.563 6.563 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.111 3.889 27 C -0.125 4.125 28 C -0.142 4.142 29 C -0.111 4.111 30 H 0.216 0.784 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.353 0.647 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.193 -14.661 -24.807 33.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C -0.021 4.021 4 C -0.106 4.106 5 C 0.321 3.679 6 O -0.411 6.411 7 N -0.338 5.338 8 C -0.024 4.024 9 C -0.176 4.176 10 C -0.147 4.147 11 C -0.035 4.035 12 H 0.063 0.937 13 N -0.294 5.294 14 C -0.083 4.083 15 C 0.236 3.764 16 O -0.445 6.445 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.012 4.012 27 C -0.163 4.163 28 C -0.179 4.179 29 C -0.149 4.149 30 H 0.233 0.767 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.173 0.827 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.111 0.889 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.443 -13.525 -24.279 32.813 hybrid contribution -1.790 -1.413 -0.393 2.314 sum 15.654 -14.938 -24.672 32.816 Atomic orbital electron populations 1.24935 0.96006 0.99246 1.00253 1.22679 0.94183 1.01644 1.01209 1.18550 0.85648 0.94041 1.03878 1.22104 0.97448 0.94561 0.96500 1.20275 0.80514 0.84859 0.82210 1.90696 1.36426 1.35770 1.78182 1.47968 1.41873 1.37682 1.06316 1.21934 0.91154 0.91190 0.98108 1.21906 1.01123 0.98225 0.96374 1.21537 0.98625 0.97299 0.97248 1.21829 0.96688 0.94462 0.90528 0.93742 1.60083 1.36822 1.06417 1.26050 1.21743 0.93013 0.97656 0.95897 1.19683 0.83000 0.88720 0.84982 1.90568 1.59931 1.21298 1.72720 1.42203 1.33924 1.15813 1.31096 1.19434 1.16988 0.99796 1.07092 0.86261 1.25041 0.96969 0.98126 0.96074 1.69617 1.27951 1.35970 1.18577 0.86671 0.79827 0.84442 0.78437 1.19597 1.20177 1.19561 1.21717 0.98615 0.92335 0.88528 1.23086 0.92595 1.03226 0.97379 1.22878 0.97327 1.01650 0.96059 1.22837 0.97263 1.02182 0.92578 0.76691 0.88366 0.88629 0.89173 0.90922 0.90239 0.91645 0.90706 0.91414 0.82706 0.93777 0.89499 0.79721 0.91619 0.90277 0.89172 0.90113 0.89149 0.90707 0.89676 0.88914 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 19.25 29.55 0.57 -1.32 16 2 C -0.20 -1.95 12.44 -37.12 -0.46 -2.41 16 3 C 0.02 0.10 4.78 -29.52 -0.14 -0.04 16 4 C -0.10 -0.80 0.30 -154.85 -0.05 -0.85 16 5 C 0.53 6.14 5.89 -10.98 -0.06 6.08 16 6 O -0.53 -8.43 15.62 5.55 0.09 -8.34 16 7 N -0.60 -6.13 2.98 -173.03 -0.52 -6.64 16 8 C 0.10 0.68 5.26 -3.93 -0.02 0.65 16 9 C -0.14 -1.00 5.98 -26.83 -0.16 -1.16 16 10 C -0.11 -1.11 5.40 -26.69 -0.14 -1.26 16 11 C 0.08 0.93 2.64 -67.59 -0.18 0.75 16 12 H 0.04 0.58 7.80 -51.93 -0.41 0.17 16 13 N -0.66 -10.33 5.94 -107.86 -0.64 -10.97 16 14 C 0.05 0.84 5.97 -4.98 -0.03 0.81 16 15 C 0.45 10.36 7.82 -10.98 -0.09 10.28 16 16 O -0.56 -15.30 15.78 5.55 0.09 -15.21 16 17 N -0.59 -14.26 5.09 -10.96 -0.06 -14.32 16 18 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 19 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.94 13.96 55.50 0.77 -25.17 16 22 Si 0.88 19.54 27.74 -169.99 -4.71 14.82 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 26 C 0.11 1.32 5.69 -3.71 -0.02 1.30 16 27 C -0.13 -0.64 5.77 -25.92 -0.15 -0.79 16 28 C -0.14 -0.68 7.73 -25.92 -0.20 -0.88 16 29 C -0.11 -0.86 6.80 -25.92 -0.18 -1.04 16 30 H 0.22 1.62 7.80 -54.08 -0.42 1.19 16 31 H 0.10 0.45 7.32 -51.93 -0.38 0.07 16 32 H 0.10 0.52 5.82 -51.93 -0.30 0.22 16 33 H 0.09 0.43 3.03 -51.93 -0.16 0.27 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.51 8.03 -51.93 -0.42 0.09 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.73 7.44 -51.93 -0.39 0.35 16 39 H 0.35 5.84 8.06 -39.29 -0.32 5.52 16 40 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 41 H 0.09 1.31 7.43 -51.93 -0.39 0.92 16 42 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.25 7.04 -51.93 -0.37 0.89 16 46 H 0.08 0.24 7.14 -51.93 -0.37 -0.13 16 47 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.29 7.62 -51.93 -0.40 -0.10 16 50 H 0.09 0.87 7.74 -51.93 -0.40 0.47 16 51 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -35.94 403.84 -8.32 -44.26 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -7.87 Total: 13.15 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.56 Total: 2.33 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.44 Total: -57.09 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.17 Total: -23.56 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.94 -8.32 -44.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208318641.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.511 kcal (2) G-P(sol) polarization free energy of solvation -35.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds