Wall clock time and date at job start Wed Apr 1 2020 04:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46688 * 171.41012 * 3 2 1 5 5 C 1.50704 * 112.84799 * 53.91872 * 4 3 2 6 6 O 1.21285 * 119.99812 * 246.67749 * 5 4 3 7 7 N 1.34775 * 120.00339 * 66.67777 * 5 4 3 8 8 C 1.46925 * 120.62646 * 5.16986 * 7 5 4 9 9 C 1.52765 * 109.00696 * 233.57827 * 8 7 5 10 10 C 1.53040 * 109.38715 * 305.59464 * 9 8 7 11 11 C 1.53040 * 109.53956 * 61.23298 * 10 9 8 12 12 H 1.09002 * 109.49583 * 58.59041 * 11 10 9 13 13 N 1.46896 * 109.52558 * 178.67173 * 11 10 9 14 14 C 1.46895 * 110.99889 * 274.85678 * 13 11 10 15 15 C 1.50703 * 109.47403 * 179.97438 * 14 13 11 16 16 O 1.21289 * 119.99857 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00254 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00029 * 180.02562 * 17 15 14 19 19 H 1.08006 * 119.99745 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00349 * 180.02562 * 18 17 15 21 21 N 1.31403 * 120.00409 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99489 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46951 * 90.00311 * 22 20 18 24 24 H 1.48502 * 109.47051 * 209.99977 * 22 20 18 25 25 H 1.48502 * 109.47309 * 330.00438 * 22 20 18 26 26 C 1.46920 * 120.63100 * 185.44194 * 7 5 4 27 27 C 1.53788 * 113.61187 * 185.10938 * 4 3 2 28 28 C 1.53780 * 87.07850 * 89.20541 * 27 4 3 29 29 C 1.53775 * 113.69389 * 282.64712 * 4 3 2 30 30 H 4.44642 * 5.63390 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.46925 * 51.41761 * 3 2 1 32 32 H 1.08997 * 109.47117 * 291.41244 * 3 2 1 33 33 H 1.08996 * 109.58840 * 353.41607 * 8 7 5 34 34 H 1.08995 * 109.58790 * 113.84319 * 8 7 5 35 35 H 1.08998 * 109.56472 * 185.55309 * 9 8 7 36 36 H 1.08999 * 109.38194 * 65.51731 * 9 8 7 37 37 H 1.09003 * 109.45595 * 301.21805 * 10 9 8 38 38 H 1.08990 * 109.46133 * 181.25667 * 10 9 8 39 39 H 1.00902 * 111.00225 * 150.90378 * 13 11 10 40 40 H 1.08998 * 109.47155 * 299.99813 * 14 13 11 41 41 H 1.08999 * 109.47553 * 59.99786 * 14 13 11 42 42 H 0.96994 * 120.00089 * 0.02562 * 17 15 14 43 43 H 0.96998 * 120.00124 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.59190 * 246.15233 * 26 7 5 45 45 H 1.09001 * 109.58804 * 6.44903 * 26 7 5 46 46 H 1.08997 * 113.61204 * 334.65219 * 27 4 3 47 47 H 1.09003 * 113.68716 * 203.76467 * 27 4 3 48 48 H 1.09001 * 113.61408 * 139.97971 * 28 27 4 49 49 H 1.09005 * 113.61087 * 270.88065 * 28 27 4 50 50 H 1.09003 * 113.61568 * 156.32658 * 29 4 3 51 51 H 1.08994 * 113.61569 * 25.42170 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4272 -0.2155 5 6 2.5787 2.4097 0.7712 6 8 1.8289 3.2832 0.3895 7 7 2.8962 2.3176 2.0778 8 6 3.8892 1.3381 2.5396 9 6 3.2732 0.4919 3.6523 10 6 2.7378 1.4112 4.7524 11 6 1.6499 2.3200 4.1756 12 1 0.8471 1.7093 3.7625 13 7 1.1140 3.1802 5.2390 14 6 0.0513 2.4940 5.9857 15 6 -0.4724 3.4050 7.0660 16 8 -0.0065 4.5168 7.2002 17 7 -1.4591 2.9848 7.8822 18 6 -1.9358 3.8138 8.8646 19 1 -1.5203 4.8035 8.9846 20 6 -2.9527 3.3805 9.7065 21 7 -3.4093 4.1749 10.6484 22 14 -3.6708 1.6685 9.4993 23 1 -2.9074 0.7071 10.3350 24 1 -5.0934 1.6735 9.9250 25 1 -3.5822 1.2638 8.0732 26 6 2.2517 3.1908 3.0681 27 6 4.6838 1.5209 -0.3564 28 6 4.4786 1.3116 -1.8660 29 6 3.0703 1.8997 -1.6764 30 1 -1.0502 -0.0004 0.0003 31 1 3.0096 -0.6401 -0.8034 32 1 3.0095 -0.3743 0.9567 33 1 4.1795 0.6932 1.7101 34 1 4.7658 1.8596 2.9237 35 1 4.0314 -0.1710 4.0691 36 1 2.4552 -0.1020 3.2445 37 1 3.5517 2.0220 5.1431 38 1 2.3180 0.8080 5.5573 39 1 0.7839 4.0565 4.8633 40 1 -0.7596 2.2323 5.3060 41 1 0.4526 1.5874 6.4386 42 1 -1.8319 2.0959 7.7747 43 1 -4.1190 3.8722 11.2363 44 1 2.9920 3.8665 3.4964 45 1 1.4635 3.7697 2.5868 46 1 5.2179 0.7042 0.1291 47 1 5.0877 2.5010 -0.1024 48 1 5.1298 1.9288 -2.4849 49 1 4.4774 0.2634 -2.1653 50 1 3.0319 2.9838 -1.7832 51 1 2.3020 1.3887 -2.2565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208318641.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:52 Heat of formation + Delta-G solvation = -13.418999 kcal Electronic energy + Delta-G solvation = -31044.421745 eV Core-core repulsion = 26944.993073 eV Total energy + Delta-G solvation = -4099.428671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.13287 -40.45748 -39.59283 -38.37992 -36.45762 -35.84046 -34.61725 -33.78825 -33.24525 -31.60931 -30.00299 -28.11939 -27.19471 -26.67556 -25.82669 -24.93244 -23.53457 -21.87799 -21.35488 -20.61585 -20.22765 -19.89534 -19.13609 -17.96666 -17.60588 -17.40550 -17.03372 -16.65409 -16.55459 -16.13874 -15.83838 -15.64867 -15.47009 -15.21213 -15.08206 -14.90450 -14.65151 -14.32512 -14.17148 -14.11387 -13.92553 -13.69860 -13.46594 -13.33196 -13.29645 -12.95896 -12.72199 -12.44967 -12.42573 -12.19538 -12.00858 -11.87488 -11.85066 -11.79473 -11.65999 -11.54133 -11.34836 -11.07171 -10.98954 -10.55078 -10.48128 -10.28129 -9.73229 -9.44699 -8.43699 -6.04963 1.28091 1.33394 1.42415 1.52438 1.79817 1.86710 1.90077 1.91790 2.20727 2.69182 3.11685 3.25398 3.28595 3.33297 3.61381 3.72223 3.77329 3.81455 3.87458 3.99427 4.01312 4.07986 4.12989 4.23611 4.34043 4.44692 4.46780 4.55297 4.60616 4.64869 4.69359 4.75502 4.79265 4.81696 4.88513 4.99901 5.02509 5.05876 5.10711 5.15559 5.20515 5.23256 5.35888 5.45757 5.49990 5.51748 5.86005 5.97997 6.23015 6.39028 6.56186 6.67730 6.84470 7.12313 7.35583 7.91641 8.73865 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002177 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.411338 B =12855.738332 C =13246.756029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.206 4.206 3 C 0.014 3.986 4 C -0.102 4.102 5 C 0.525 3.475 6 O -0.592 6.592 7 N -0.601 5.601 8 C 0.092 3.908 9 C -0.129 4.129 10 C -0.108 4.108 11 C 0.084 3.916 12 H 0.041 0.959 13 N -0.674 5.674 14 C 0.065 3.935 15 C 0.449 3.551 16 O -0.613 6.613 17 N -0.590 5.590 18 C -0.330 4.330 19 H 0.055 0.945 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.254 1.254 24 H -0.274 1.274 25 H -0.234 1.234 26 C 0.115 3.885 27 C -0.116 4.116 28 C -0.126 4.126 29 C -0.125 4.125 30 H 0.227 0.773 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.342 0.658 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.390 0.610 43 H 0.280 0.720 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.116 0.884 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.110 0.890 50 H 0.064 0.936 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.228 -19.830 -26.362 38.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.206 4.206 3 C -0.022 4.022 4 C -0.105 4.105 5 C 0.314 3.686 6 O -0.472 6.472 7 N -0.333 5.333 8 C -0.029 4.029 9 C -0.168 4.168 10 C -0.146 4.146 11 C -0.027 4.027 12 H 0.059 0.941 13 N -0.307 5.307 14 C -0.067 4.067 15 C 0.237 3.763 16 O -0.497 6.497 17 N -0.231 5.231 18 C -0.459 4.459 19 H 0.073 0.927 20 C -0.214 4.214 21 N -0.573 5.573 22 Si 0.785 3.215 23 H -0.178 1.178 24 H -0.199 1.199 25 H -0.158 1.158 26 C -0.009 4.009 27 C -0.153 4.153 28 C -0.163 4.163 29 C -0.163 4.163 30 H 0.243 0.757 31 H 0.147 0.853 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.161 0.839 40 H 0.086 0.914 41 H 0.135 0.865 42 H 0.225 0.775 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.134 0.866 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.128 0.872 50 H 0.083 0.917 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.525 -18.738 -25.843 37.419 hybrid contribution -2.387 0.383 0.092 2.419 sum 17.138 -18.356 -25.751 35.969 Atomic orbital electron populations 1.25555 0.97140 0.99982 1.01223 1.23524 0.95517 1.01028 1.00511 1.18833 0.83687 0.93499 1.06198 1.22211 0.99423 0.94084 0.94781 1.21105 0.79700 0.84811 0.82955 1.90668 1.39064 1.38264 1.79173 1.48089 1.41929 1.37689 1.05629 1.22275 0.90515 0.90918 0.99159 1.21895 1.01877 0.97771 0.95243 1.21555 0.97550 0.97197 0.98303 1.21860 0.97148 0.94016 0.89632 0.94075 1.60160 1.36379 1.06651 1.27473 1.21648 0.94136 0.96673 0.94284 1.20884 0.81551 0.88767 0.85132 1.90546 1.61179 1.23951 1.74042 1.42018 1.34466 1.16123 1.30517 1.19006 1.18484 0.98599 1.09797 0.92663 1.26135 0.96564 1.04006 0.94721 1.69799 1.28705 1.39086 1.19715 0.85357 0.78488 0.76940 0.80687 1.17830 1.19924 1.15752 1.21496 0.97963 0.92663 0.88788 1.23111 0.90250 1.04149 0.97838 1.22874 0.94566 1.02854 0.96015 1.22873 0.99583 1.00716 0.93126 0.75664 0.85258 0.86515 0.86346 0.89562 0.87130 0.91686 0.91215 0.91503 0.83924 0.91395 0.86491 0.77485 0.91074 0.90488 0.92084 0.86580 0.90055 0.90192 0.87203 0.91695 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.37 19.25 74.32 1.43 -2.94 16 2 C -0.21 -3.73 12.44 31.13 0.39 -3.34 16 3 C 0.01 0.14 4.78 28.79 0.14 0.27 16 4 C -0.10 -1.36 0.30 -52.40 -0.02 -1.38 16 5 C 0.52 11.90 5.89 87.66 0.52 12.42 16 6 O -0.59 -19.77 15.62 -3.05 -0.05 -19.82 16 7 N -0.60 -11.43 2.98 -819.73 -2.44 -13.87 16 8 C 0.09 0.91 5.26 86.22 0.45 1.36 16 9 C -0.13 -1.32 5.98 30.53 0.18 -1.13 16 10 C -0.11 -1.90 5.40 30.62 0.17 -1.74 16 11 C 0.08 1.96 2.64 45.00 0.12 2.08 16 12 H 0.04 1.01 7.80 -2.39 -0.02 0.99 16 13 N -0.67 -20.95 5.94 -495.17 -2.94 -23.89 16 14 C 0.07 2.09 5.97 85.56 0.51 2.60 16 15 C 0.45 20.89 7.82 87.66 0.69 21.57 16 16 O -0.61 -34.91 15.78 -3.06 -0.05 -34.96 16 17 N -0.59 -28.47 5.09 -306.98 -1.56 -30.03 16 18 C -0.33 -19.66 10.16 84.04 0.85 -18.81 16 19 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 20 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 21 N -0.93 -56.81 13.96 21.66 0.30 -56.50 16 22 Si 0.97 39.22 27.74 68.60 1.90 41.13 16 23 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.23 -8.08 6.52 99.48 0.65 -7.44 16 26 C 0.11 2.78 5.69 86.37 0.49 3.27 16 27 C -0.12 -0.75 5.77 31.12 0.18 -0.57 16 28 C -0.13 -0.78 7.73 31.12 0.24 -0.54 16 29 C -0.12 -1.84 6.80 31.12 0.21 -1.63 16 30 H 0.23 3.42 7.80 -4.41 -0.03 3.39 16 31 H 0.13 0.53 7.32 -2.39 -0.02 0.52 16 32 H 0.12 0.66 5.82 -2.39 -0.01 0.65 16 33 H 0.12 0.50 3.03 -2.39 -0.01 0.50 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.72 8.03 -2.39 -0.02 0.70 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.21 7.44 -2.39 -0.02 1.20 16 39 H 0.34 11.80 8.06 -89.69 -0.72 11.07 16 40 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 41 H 0.12 3.13 7.43 -2.39 -0.02 3.11 16 42 H 0.39 15.57 5.76 -92.71 -0.53 15.04 16 43 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 1.83 7.04 -2.39 -0.02 1.81 16 46 H 0.12 -0.03 7.14 -2.39 -0.02 -0.05 16 47 H 0.08 0.72 8.10 -2.39 -0.02 0.70 16 48 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.11 0.19 7.62 -2.38 -0.02 0.18 16 50 H 0.06 1.30 7.74 -2.39 -0.02 1.28 16 51 H 0.07 1.04 8.06 -2.39 -0.02 1.02 16 Total: -1.00 -87.96 403.84 1.82 -86.14 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -0.36 Total: 40.71 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 7.02 Total: 11.09 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -6.64 Total: -124.29 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -0.10 Total: -54.78 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.90 Total: 41.13 kcal Total: -87.96 1.82 -86.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208318641.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.719 kcal (2) G-P(sol) polarization free energy of solvation -87.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds