Wall clock time and date at job start Wed Apr 1 2020 04:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46967 * 2 1 4 4 C 1.50705 * 109.46804 * 119.99677 * 2 1 3 5 5 C 1.38604 * 119.54885 * 275.02241 * 4 2 1 6 6 C 1.38587 * 119.34796 * 179.97438 * 5 4 2 7 7 C 1.38627 * 118.48833 * 359.73757 * 6 5 4 8 8 C 1.39265 * 119.06441 * 0.52253 * 7 6 5 9 9 C 1.48164 * 119.72843 * 179.73850 * 8 7 6 10 10 O 1.21510 * 119.99769 * 359.72708 * 9 8 7 11 11 N 1.34772 * 120.00256 * 179.72920 * 9 8 7 12 12 C 1.46509 * 120.00117 * 184.98638 * 11 9 8 13 13 C 1.52997 * 109.49222 * 57.29662 * 12 11 9 14 14 O 1.42898 * 109.47456 * 54.46911 * 13 12 11 15 15 C 1.53038 * 109.49660 * 297.23564 * 12 11 9 16 16 C 1.53037 * 109.53642 * 301.40980 * 15 12 11 17 17 C 1.53194 * 109.31616 * 298.63849 * 16 15 12 18 18 N 1.46923 * 108.77360 * 54.63201 * 17 16 15 19 19 C 1.36937 * 120.62970 * 126.39809 * 18 17 16 20 20 H 1.08005 * 119.99711 * 332.68171 * 19 18 17 21 21 C 1.38810 * 120.00640 * 152.68715 * 19 18 17 22 22 N 1.31614 * 120.00789 * 160.08668 * 21 19 18 23 23 Si 1.86803 * 119.99567 * 340.09107 * 21 19 18 24 24 H 1.48500 * 109.47477 * 94.94190 * 23 21 19 25 25 H 1.48501 * 109.47210 * 214.93996 * 23 21 19 26 26 H 1.48504 * 109.46967 * 334.93823 * 23 21 19 27 27 C 1.46925 * 118.74277 * 306.39330 * 18 17 16 28 28 N 1.31493 * 119.54500 * 95.00510 * 4 2 1 29 29 H 1.08996 * 109.47641 * 300.00096 * 1 2 3 30 30 H 1.08998 * 109.47075 * 60.00377 * 1 2 3 31 31 H 1.09001 * 109.46997 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47131 * 239.99773 * 2 1 3 33 33 H 1.08995 * 109.47303 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47193 * 299.99962 * 3 2 1 35 35 H 1.09000 * 109.47727 * 59.99558 * 3 2 1 36 36 H 1.08000 * 120.32633 * 0.02562 * 5 4 2 37 37 H 1.07995 * 120.75170 * 180.02562 * 6 5 4 38 38 H 1.07999 * 120.46825 * 180.28329 * 7 6 5 39 39 H 0.97000 * 120.00055 * 5.26202 * 11 9 8 40 40 H 1.09007 * 109.46868 * 174.46254 * 13 12 11 41 41 H 1.08994 * 109.47305 * 294.46228 * 13 12 11 42 42 H 0.96702 * 113.99931 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.46322 * 61.43060 * 15 12 11 44 44 H 1.09000 * 109.45820 * 181.39141 * 15 12 11 45 45 H 1.09002 * 109.49884 * 58.59048 * 16 15 12 46 46 H 1.09000 * 109.50128 * 178.68439 * 16 15 12 47 47 H 1.08996 * 109.58883 * 174.42119 * 17 16 15 48 48 H 1.08998 * 109.58485 * 294.84799 * 17 16 15 49 49 H 0.96996 * 120.00461 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.58611 * 293.82530 * 27 18 17 51 51 H 1.08995 * 109.59131 * 173.39550 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.1606 -0.0099 2.4197 6 6 2.6223 -0.6674 3.5489 7 6 2.9363 -2.0139 3.4480 8 6 2.7881 -2.6529 2.2195 9 6 3.1249 -4.0903 2.0937 10 8 3.5333 -4.7053 3.0588 11 7 2.9784 -4.7155 0.9088 12 6 3.2063 -6.1594 0.8093 13 6 2.2835 -6.8904 1.7864 14 8 0.9301 -6.4999 1.5463 15 6 4.6646 -6.4712 1.1534 16 6 5.5891 -5.7137 0.1976 17 6 5.3218 -6.1754 -1.2384 18 7 3.8906 -6.0136 -1.5284 19 6 3.4766 -5.3053 -2.6248 20 1 4.0985 -4.5185 -3.0258 21 6 2.2578 -5.5983 -3.2209 22 7 1.6738 -4.7096 -3.9964 23 14 1.4462 -7.2541 -2.9223 24 1 0.4717 -7.1341 -1.8082 25 1 0.7390 -7.6881 -4.1539 26 1 2.4828 -8.2566 -2.5674 27 6 2.9119 -6.6262 -0.6198 28 7 2.3425 -1.9863 1.1615 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.9024 1.0378 2.4660 37 1 2.7306 -0.1438 4.4872 38 1 3.2945 -2.5587 4.3090 39 1 2.7260 -4.2090 0.1210 40 1 2.3820 -7.9665 1.6431 41 1 2.5600 -6.6332 2.8088 42 1 0.2883 -6.9252 2.1314 43 1 4.8699 -6.1623 2.1783 44 1 4.8397 -7.5425 1.0552 45 1 5.3972 -4.6437 0.2774 46 1 6.6277 -5.9178 0.4580 47 1 5.9058 -5.5701 -1.9316 48 1 5.5994 -7.2243 -1.3426 49 1 0.8219 -4.9142 -4.4126 50 1 2.9930 -7.7118 -0.6735 51 1 1.9059 -6.3183 -0.9048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271973985.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:51 Heat of formation + Delta-G solvation = -26.686719 kcal Electronic energy + Delta-G solvation = -32952.592270 eV Core-core repulsion = 28852.588267 eV Total energy + Delta-G solvation = -4100.004003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.70845 -39.69354 -37.54354 -36.08216 -35.44947 -33.83130 -32.87643 -32.24840 -30.76312 -30.48540 -29.72861 -27.21594 -25.53467 -25.25752 -24.60143 -23.84293 -22.46925 -21.68639 -20.45524 -19.83258 -18.79148 -17.72237 -16.96944 -16.85248 -16.69464 -16.04050 -15.42806 -15.00740 -14.91946 -14.71161 -14.47621 -14.11923 -13.99615 -13.71648 -13.61614 -13.56169 -13.27493 -13.11163 -12.90629 -12.60875 -12.40412 -12.31655 -12.09479 -12.00447 -11.78986 -11.53474 -11.40162 -11.19662 -11.16940 -10.86403 -10.66842 -10.47318 -10.23788 -10.08145 -9.90890 -9.84036 -9.79027 -9.50856 -9.42408 -9.10505 -8.95805 -8.59700 -8.39950 -6.96411 -5.91958 -3.28862 0.76639 1.25571 3.02241 3.41001 3.49684 3.52586 3.53118 4.02012 4.12075 4.50306 4.56696 4.59616 4.84283 4.94122 4.95164 5.04277 5.09178 5.19889 5.26595 5.28460 5.39797 5.46835 5.54172 5.57395 5.61058 5.65639 5.71571 5.78190 5.78667 5.87282 5.88909 5.96543 6.03190 6.11111 6.12968 6.21677 6.25872 6.29244 6.35071 6.36306 6.40908 6.58316 6.62954 6.67038 6.76977 6.94147 7.08710 7.85809 7.92446 7.97103 8.22343 8.35633 8.67170 8.95084 9.74209 10.10918 11.23315 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009645 B = 0.004796 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.245099 B = 5836.440260 C = 7232.611453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 C -0.145 4.145 4 C 0.140 3.860 5 C -0.155 4.155 6 C -0.084 4.084 7 C -0.125 4.125 8 C 0.091 3.909 9 C 0.571 3.429 10 O -0.554 6.554 11 N -0.663 5.663 12 C 0.163 3.837 13 C 0.063 3.937 14 O -0.561 6.561 15 C -0.121 4.121 16 C -0.130 4.130 17 C 0.146 3.854 18 N -0.603 5.603 19 C -0.262 4.262 20 H 0.087 0.913 21 C 0.029 3.971 22 N -0.903 5.903 23 Si 0.873 3.127 24 H -0.282 1.282 25 H -0.304 1.304 26 H -0.271 1.271 27 C 0.128 3.872 28 N -0.445 5.445 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.423 0.577 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.370 0.630 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.023 0.977 49 H 0.262 0.738 50 H 0.039 0.961 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 7.435 14.628 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.203 4.203 4 C 0.000 4.000 5 C -0.175 4.175 6 C -0.110 4.110 7 C -0.146 4.146 8 C -0.047 4.047 9 C 0.355 3.645 10 O -0.433 6.433 11 N -0.312 5.312 12 C 0.074 3.926 13 C -0.016 4.016 14 O -0.365 6.365 15 C -0.160 4.160 16 C -0.170 4.170 17 C 0.021 3.979 18 N -0.327 5.327 19 C -0.390 4.390 20 H 0.104 0.896 21 C -0.171 4.171 22 N -0.546 5.546 23 Si 0.704 3.296 24 H -0.209 1.209 25 H -0.233 1.233 26 H -0.196 1.196 27 C 0.002 3.998 28 N -0.156 5.156 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.216 0.784 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.056 0.944 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.946 6.905 13.855 15.509 hybrid contribution -0.880 -0.656 1.029 1.504 sum 0.066 6.249 14.884 16.142 Atomic orbital electron populations 1.21778 0.93515 1.02720 1.01704 1.20114 0.96335 0.95216 0.95382 1.21909 1.01326 0.94938 1.02078 1.21298 0.94429 0.89375 0.94923 1.22176 1.00458 1.01572 0.93344 1.21546 0.96536 0.94051 0.98870 1.22059 0.99004 0.94980 0.98546 1.21303 0.98361 0.94955 0.90101 1.17823 0.78046 0.84998 0.83620 1.90643 1.47843 1.66098 1.38761 1.45704 1.66099 1.08422 1.10997 1.21026 0.93815 0.80180 0.97542 1.22642 0.82303 0.97112 0.99548 1.86590 1.16355 1.71168 1.62341 1.21779 0.93318 1.00143 1.00749 1.21928 0.97521 1.00547 0.96961 1.20987 0.85655 0.97718 0.93570 1.44360 0.99787 1.62445 1.26060 1.18884 1.04492 1.11415 1.04206 0.89559 1.25241 0.97392 0.97423 0.96997 1.69815 1.16859 1.33259 1.34639 0.87068 0.79443 0.87008 0.76104 1.20925 1.23267 1.19639 1.21603 0.95525 0.95994 0.86680 1.67509 1.08593 1.08835 1.30651 0.92980 0.91710 0.91944 0.88186 0.92382 0.91667 0.92516 0.84430 0.84450 0.83799 0.73797 0.93517 0.91662 0.78446 0.90411 0.91830 0.92053 0.92608 0.91853 0.95934 0.92825 0.94355 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.18 37.16 0.34 -1.29 16 2 C -0.05 -0.65 3.23 -91.77 -0.30 -0.95 16 3 C -0.14 -1.38 8.62 37.16 0.32 -1.06 16 4 C 0.14 1.98 5.79 -82.60 -0.48 1.50 16 5 C -0.16 -1.74 9.18 -39.32 -0.36 -2.10 16 6 C -0.08 -0.92 10.17 -39.31 -0.40 -1.32 16 7 C -0.12 -1.71 9.63 -39.06 -0.38 -2.09 16 8 C 0.09 1.55 6.75 -83.01 -0.56 0.99 16 9 C 0.57 10.66 7.22 -12.19 -0.09 10.58 16 10 O -0.55 -10.56 12.64 5.36 0.07 -10.49 16 11 N -0.66 -13.17 3.92 -48.33 -0.19 -13.36 16 12 C 0.16 3.12 0.45 -131.70 -0.06 3.06 16 13 C 0.06 1.08 5.59 37.16 0.21 1.29 16 14 O -0.56 -9.87 13.08 -35.23 -0.46 -10.33 16 15 C -0.12 -2.11 4.51 -26.69 -0.12 -2.23 16 16 C -0.13 -2.30 5.93 -26.61 -0.16 -2.45 16 17 C 0.15 2.91 6.52 -3.71 -0.02 2.89 16 18 N -0.60 -14.18 2.64 -172.32 -0.45 -14.63 16 19 C -0.26 -7.18 10.04 -15.06 -0.15 -7.33 16 20 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 21 C 0.03 0.83 5.25 -17.43 -0.09 0.74 16 22 N -0.90 -27.31 13.97 55.49 0.78 -26.53 16 23 Si 0.87 22.51 24.34 -169.99 -4.14 18.37 16 24 H -0.28 -7.23 6.71 56.52 0.38 -6.86 16 25 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 26 H -0.27 -6.83 6.42 56.52 0.36 -6.46 16 27 C 0.13 2.86 2.75 -3.71 -0.01 2.85 16 28 N -0.44 -7.69 9.46 -6.06 -0.06 -7.75 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.44 6.49 -51.93 -0.34 0.10 16 36 H 0.14 1.13 6.31 -52.49 -0.33 0.80 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.14 1.83 7.64 -52.49 -0.40 1.43 16 39 H 0.42 9.43 7.77 -40.82 -0.32 9.11 16 40 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.07 1.11 6.32 -51.93 -0.33 0.78 16 42 H 0.37 4.56 9.12 45.56 0.42 4.97 16 43 H 0.08 1.37 6.24 -51.93 -0.32 1.04 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.18 7.53 -51.93 -0.39 0.79 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.06 1.26 7.93 -51.93 -0.41 0.84 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.04 0.85 6.96 -51.93 -0.36 0.49 16 51 H 0.09 2.18 4.34 -51.93 -0.23 1.95 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -32.79 393.59 -8.11 -40.91 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -7.28 Total: 14.82 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.31 Total: 3.08 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 0.07 Total: -62.28 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.39 Total: -20.83 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.14 Total: 18.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.79 -8.11 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271973985.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.222 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds