Wall clock time and date at job start Wed Apr 1 2020 04:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46967 * 2 1 4 4 C 1.50705 * 109.46804 * 119.99677 * 2 1 3 5 5 C 1.38604 * 119.54885 * 275.02241 * 4 2 1 6 6 C 1.38587 * 119.34796 * 179.97438 * 5 4 2 7 7 C 1.38627 * 118.48833 * 359.73757 * 6 5 4 8 8 C 1.39265 * 119.06441 * 0.52253 * 7 6 5 9 9 C 1.48164 * 119.72843 * 179.73850 * 8 7 6 10 10 O 1.21510 * 119.99769 * 359.72708 * 9 8 7 11 11 N 1.34772 * 120.00256 * 179.72920 * 9 8 7 12 12 C 1.46509 * 120.00117 * 184.98638 * 11 9 8 13 13 C 1.52997 * 109.49222 * 57.29662 * 12 11 9 14 14 O 1.42898 * 109.47456 * 54.46911 * 13 12 11 15 15 C 1.53038 * 109.49660 * 297.23564 * 12 11 9 16 16 C 1.53037 * 109.53642 * 301.40980 * 15 12 11 17 17 C 1.53194 * 109.31616 * 298.63849 * 16 15 12 18 18 N 1.46923 * 108.77360 * 54.63201 * 17 16 15 19 19 C 1.36937 * 120.62970 * 126.39809 * 18 17 16 20 20 H 1.08005 * 119.99711 * 332.68171 * 19 18 17 21 21 C 1.38810 * 120.00640 * 152.68715 * 19 18 17 22 22 N 1.31614 * 120.00789 * 160.08668 * 21 19 18 23 23 Si 1.86803 * 119.99567 * 340.09107 * 21 19 18 24 24 H 1.48500 * 109.47477 * 94.94190 * 23 21 19 25 25 H 1.48501 * 109.47210 * 214.93996 * 23 21 19 26 26 H 1.48504 * 109.46967 * 334.93823 * 23 21 19 27 27 C 1.46925 * 118.74277 * 306.39330 * 18 17 16 28 28 N 1.31493 * 119.54500 * 95.00510 * 4 2 1 29 29 H 1.08996 * 109.47641 * 300.00096 * 1 2 3 30 30 H 1.08998 * 109.47075 * 60.00377 * 1 2 3 31 31 H 1.09001 * 109.46997 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47131 * 239.99773 * 2 1 3 33 33 H 1.08995 * 109.47303 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47193 * 299.99962 * 3 2 1 35 35 H 1.09000 * 109.47727 * 59.99558 * 3 2 1 36 36 H 1.08000 * 120.32633 * 0.02562 * 5 4 2 37 37 H 1.07995 * 120.75170 * 180.02562 * 6 5 4 38 38 H 1.07999 * 120.46825 * 180.28329 * 7 6 5 39 39 H 0.97000 * 120.00055 * 5.26202 * 11 9 8 40 40 H 1.09007 * 109.46868 * 174.46254 * 13 12 11 41 41 H 1.08994 * 109.47305 * 294.46228 * 13 12 11 42 42 H 0.96702 * 113.99931 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.46322 * 61.43060 * 15 12 11 44 44 H 1.09000 * 109.45820 * 181.39141 * 15 12 11 45 45 H 1.09002 * 109.49884 * 58.59048 * 16 15 12 46 46 H 1.09000 * 109.50128 * 178.68439 * 16 15 12 47 47 H 1.08996 * 109.58883 * 174.42119 * 17 16 15 48 48 H 1.08998 * 109.58485 * 294.84799 * 17 16 15 49 49 H 0.96996 * 120.00461 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.58611 * 293.82530 * 27 18 17 51 51 H 1.08995 * 109.59131 * 173.39550 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.1606 -0.0099 2.4197 6 6 2.6223 -0.6674 3.5489 7 6 2.9363 -2.0139 3.4480 8 6 2.7881 -2.6529 2.2195 9 6 3.1249 -4.0903 2.0937 10 8 3.5333 -4.7053 3.0588 11 7 2.9784 -4.7155 0.9088 12 6 3.2063 -6.1594 0.8093 13 6 2.2835 -6.8904 1.7864 14 8 0.9301 -6.4999 1.5463 15 6 4.6646 -6.4712 1.1534 16 6 5.5891 -5.7137 0.1976 17 6 5.3218 -6.1754 -1.2384 18 7 3.8906 -6.0136 -1.5284 19 6 3.4766 -5.3053 -2.6248 20 1 4.0985 -4.5185 -3.0258 21 6 2.2578 -5.5983 -3.2209 22 7 1.6738 -4.7096 -3.9964 23 14 1.4462 -7.2541 -2.9223 24 1 0.4717 -7.1341 -1.8082 25 1 0.7390 -7.6881 -4.1539 26 1 2.4828 -8.2566 -2.5674 27 6 2.9119 -6.6262 -0.6198 28 7 2.3425 -1.9863 1.1615 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.9024 1.0378 2.4660 37 1 2.7306 -0.1438 4.4872 38 1 3.2945 -2.5587 4.3090 39 1 2.7260 -4.2090 0.1210 40 1 2.3820 -7.9665 1.6431 41 1 2.5600 -6.6332 2.8088 42 1 0.2883 -6.9252 2.1314 43 1 4.8699 -6.1623 2.1783 44 1 4.8397 -7.5425 1.0552 45 1 5.3972 -4.6437 0.2774 46 1 6.6277 -5.9178 0.4580 47 1 5.9058 -5.5701 -1.9316 48 1 5.5994 -7.2243 -1.3426 49 1 0.8219 -4.9142 -4.4126 50 1 2.9930 -7.7118 -0.6735 51 1 1.9059 -6.3183 -0.9048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271973985.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:50 Heat of formation + Delta-G solvation = -51.325615 kcal Electronic energy + Delta-G solvation = -32953.660693 eV Core-core repulsion = 28852.588267 eV Total energy + Delta-G solvation = -4101.072426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.94163 -40.99886 -39.04037 -37.52765 -36.45224 -35.49734 -34.40411 -33.56108 -32.59260 -31.86575 -30.95784 -28.07947 -27.31330 -26.90903 -25.74159 -24.85276 -24.23210 -22.94387 -21.94247 -21.07993 -20.27109 -19.15888 -18.69603 -18.32368 -17.74671 -17.45936 -16.80105 -16.53177 -16.34886 -15.94386 -15.80186 -15.51739 -15.40358 -15.22188 -15.05794 -14.87683 -14.75164 -14.37919 -14.17833 -14.04504 -13.85485 -13.59864 -13.50994 -13.33921 -13.18555 -12.81021 -12.78445 -12.48712 -12.40359 -12.19220 -12.10011 -11.94314 -11.81323 -11.79305 -11.53531 -11.38002 -11.22636 -10.91152 -10.84027 -10.65863 -10.31889 -10.07356 -9.83202 -8.94299 -8.15092 -5.47395 -0.31972 0.27544 1.33130 1.37466 1.45821 1.76289 2.16056 2.41639 2.86681 3.00237 3.04355 3.21394 3.34834 3.57276 3.77709 3.91446 3.94584 4.04280 4.09037 4.14438 4.16171 4.21215 4.28183 4.32275 4.37639 4.45564 4.48156 4.57811 4.67762 4.72487 4.74138 4.80512 4.84540 4.89331 4.95436 4.96728 4.98760 5.03606 5.09342 5.11195 5.23176 5.25395 5.34870 5.41317 5.42826 5.60455 5.66966 5.86384 6.13669 6.55348 6.83446 6.89249 6.90243 7.21937 7.61216 8.01599 9.03852 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009645 B = 0.004796 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.245099 B = 5836.440260 C = 7232.611453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 C -0.137 4.137 4 C 0.120 3.880 5 C -0.138 4.138 6 C -0.071 4.071 7 C -0.124 4.124 8 C 0.054 3.946 9 C 0.569 3.431 10 O -0.562 6.562 11 N -0.673 5.673 12 C 0.157 3.843 13 C 0.068 3.932 14 O -0.586 6.586 15 C -0.115 4.115 16 C -0.120 4.120 17 C 0.143 3.857 18 N -0.614 5.614 19 C -0.243 4.243 20 H 0.053 0.947 21 C -0.026 4.026 22 N -0.949 5.949 23 Si 0.936 3.064 24 H -0.284 1.284 25 H -0.312 1.312 26 H -0.256 1.256 27 C 0.131 3.869 28 N -0.489 5.489 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.152 0.848 39 H 0.407 0.593 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.391 0.609 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.037 0.963 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.044 0.956 49 H 0.259 0.741 50 H 0.049 0.951 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 7.964 17.899 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.073 4.073 3 C -0.194 4.194 4 C -0.021 4.021 5 C -0.158 4.158 6 C -0.096 4.096 7 C -0.145 4.145 8 C -0.083 4.083 9 C 0.355 3.645 10 O -0.443 6.443 11 N -0.320 5.320 12 C 0.070 3.930 13 C -0.011 4.011 14 O -0.393 6.393 15 C -0.153 4.153 16 C -0.159 4.159 17 C 0.018 3.982 18 N -0.338 5.338 19 C -0.372 4.372 20 H 0.071 0.929 21 C -0.221 4.221 22 N -0.595 5.595 23 Si 0.766 3.234 24 H -0.211 1.211 25 H -0.241 1.241 26 H -0.180 1.180 27 C 0.005 3.995 28 N -0.201 5.201 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.196 0.804 37 H 0.202 0.798 38 H 0.170 0.830 39 H 0.242 0.758 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.240 0.760 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.107 0.893 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.504 7.389 17.187 18.769 hybrid contribution -1.006 -0.688 0.047 1.220 sum 0.497 6.701 17.234 18.498 Atomic orbital electron populations 1.21745 0.92885 1.01105 1.03473 1.20143 0.96882 0.96849 0.93424 1.21873 1.00999 0.92604 1.03958 1.21671 0.94911 0.88774 0.96699 1.22582 0.98203 1.03090 0.91875 1.22059 0.94304 0.92715 1.00518 1.22262 0.98515 0.96434 0.97306 1.21205 1.01160 0.94327 0.91587 1.18141 0.77403 0.86009 0.82944 1.90603 1.48396 1.66704 1.38607 1.45760 1.66772 1.08651 1.10850 1.21102 0.95750 0.80222 0.95970 1.22604 0.81716 0.98001 0.98760 1.86549 1.17176 1.72081 1.63479 1.21755 0.91707 1.01376 1.00446 1.21817 0.99570 0.99070 0.95439 1.21160 0.83268 0.98813 0.94933 1.44423 1.01731 1.62292 1.25334 1.18750 1.03554 1.10255 1.04666 0.92936 1.25781 0.98406 1.00235 0.97678 1.69943 1.17564 1.34986 1.36967 0.86064 0.78675 0.83413 0.75288 1.21082 1.24129 1.17989 1.21522 0.93506 0.96192 0.88260 1.67383 1.10113 1.10777 1.31807 0.90366 0.90704 0.95211 0.92417 0.92834 0.90872 0.89534 0.80416 0.79759 0.83008 0.75785 0.91103 0.91425 0.75970 0.90221 0.89528 0.94425 0.89348 0.92608 0.93829 0.93169 0.93337 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.18 71.98 0.66 -2.49 16 2 C -0.05 -1.39 3.23 -11.54 -0.04 -1.42 16 3 C -0.14 -2.36 8.62 71.98 0.62 -1.74 16 4 C 0.12 3.38 5.79 42.70 0.25 3.63 16 5 C -0.14 -2.65 9.18 22.44 0.21 -2.44 16 6 C -0.07 -1.28 10.17 22.45 0.23 -1.05 16 7 C -0.12 -3.21 9.63 22.61 0.22 -2.99 16 8 C 0.05 1.88 6.75 41.89 0.28 2.16 16 9 C 0.57 21.68 7.22 86.88 0.63 22.31 16 10 O -0.56 -21.24 12.64 -3.75 -0.05 -21.29 16 11 N -0.67 -27.60 3.92 -425.11 -1.67 -29.27 16 12 C 0.16 5.96 0.45 3.68 0.00 5.96 16 13 C 0.07 2.23 5.59 71.98 0.40 2.63 16 14 O -0.59 -20.37 13.08 -148.98 -1.95 -22.32 16 15 C -0.11 -3.76 4.51 30.62 0.14 -3.62 16 16 C -0.12 -4.08 5.93 30.67 0.18 -3.90 16 17 C 0.14 5.58 6.52 86.36 0.56 6.15 16 18 N -0.61 -29.21 2.64 -699.11 -1.84 -31.06 16 19 C -0.24 -13.89 10.04 84.03 0.84 -13.05 16 20 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 21 C -0.03 -1.52 5.25 84.86 0.45 -1.08 16 22 N -0.95 -60.42 13.97 21.65 0.30 -60.12 16 23 Si 0.94 48.04 24.34 68.60 1.67 49.71 16 24 H -0.28 -14.48 6.71 99.48 0.67 -13.82 16 25 H -0.31 -16.25 7.11 99.48 0.71 -15.55 16 26 H -0.26 -12.30 6.42 99.48 0.64 -11.66 16 27 C 0.13 5.79 2.75 86.36 0.24 6.03 16 28 N -0.49 -17.73 9.46 -173.08 -1.64 -19.36 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.09 0.97 6.49 -2.39 -0.02 0.96 16 36 H 0.18 1.93 6.31 -2.91 -0.02 1.92 16 37 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.15 3.59 7.64 -2.91 -0.02 3.57 16 39 H 0.41 19.37 7.77 -92.71 -0.72 18.65 16 40 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.07 2.19 6.32 -2.39 -0.02 2.18 16 42 H 0.39 9.26 9.12 -74.06 -0.68 8.58 16 43 H 0.08 2.64 6.24 -2.39 -0.01 2.62 16 44 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.04 1.45 7.53 -2.39 -0.02 1.43 16 46 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 48 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 50 H 0.05 2.05 6.96 -2.39 -0.02 2.03 16 51 H 0.05 2.81 4.34 -2.39 -0.01 2.80 16 Total: -1.00 -76.80 393.59 0.15 -76.65 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -0.54 Total: 41.97 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 5.87 Total: 15.09 kcal Atomic # 7 Polarization: -134.96 SS G_CDS: -4.85 Total: -139.81 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -2.00 Total: -43.60 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.67 Total: 49.71 kcal Total: -76.80 0.15 -76.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271973985.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.327 kcal (2) G-P(sol) polarization free energy of solvation -76.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds