Wall clock time and date at job start Wed Apr 1 2020 04:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46841 * 2 1 4 4 C 1.50702 * 109.46893 * 179.97438 * 3 2 1 5 5 C 1.38028 * 119.51137 * 125.25803 * 4 3 2 6 6 C 1.39923 * 119.12966 * 180.22776 * 5 4 3 7 7 C 1.48167 * 120.88779 * 179.79470 * 6 5 4 8 8 O 1.21507 * 120.00347 * 320.34834 * 7 6 5 9 9 N 1.34778 * 119.99855 * 140.07377 * 7 6 5 10 10 C 1.46931 * 120.62835 * 353.53050 * 9 7 6 11 11 C 1.53189 * 108.77930 * 233.58677 * 10 9 7 12 12 C 1.53045 * 109.31203 * 305.36983 * 11 10 9 13 13 C 1.53036 * 109.53977 * 61.36122 * 12 11 10 14 14 C 1.46926 * 120.63227 * 173.25496 * 9 7 6 15 15 H 1.09007 * 109.58293 * 246.19950 * 14 9 7 16 16 C 1.52995 * 109.58516 * 6.62394 * 14 9 7 17 17 N 1.46497 * 109.47398 * 292.91871 * 16 14 9 18 18 C 1.36934 * 120.00036 * 185.40769 * 17 16 14 19 19 H 1.08000 * 120.00045 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00057 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00302 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46662 * 60.00317 * 22 20 18 24 24 H 1.48504 * 109.47422 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47229 * 300.00396 * 22 20 18 26 26 C 1.39612 * 118.21827 * 359.52451 * 6 5 4 27 27 C 1.38848 * 118.94990 * 0.24952 * 26 6 5 28 28 O 1.35683 * 119.62452 * 179.97438 * 27 26 6 29 29 N 1.31877 * 119.51503 * 304.99840 * 4 3 2 30 30 H 1.08998 * 109.47500 * 300.00360 * 1 2 3 31 31 H 1.09004 * 109.46904 * 60.00388 * 1 2 3 32 32 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47454 * 240.00180 * 2 1 3 34 34 H 1.09004 * 109.46904 * 119.99612 * 2 1 3 35 35 H 1.09001 * 109.46950 * 59.99871 * 3 2 1 36 36 H 1.08994 * 109.47184 * 300.00020 * 3 2 1 37 37 H 1.07995 * 120.43434 * 0.02562 * 5 4 3 38 38 H 1.09000 * 109.59042 * 353.38065 * 10 9 7 39 39 H 1.09008 * 109.58284 * 113.65502 * 10 9 7 40 40 H 1.08996 * 109.49804 * 65.31365 * 11 10 9 41 41 H 1.08999 * 109.50132 * 185.42137 * 11 10 9 42 42 H 1.09000 * 109.46095 * 181.38310 * 12 11 10 43 43 H 1.09005 * 109.45723 * 301.34222 * 12 11 10 44 44 H 1.08998 * 109.49592 * 58.58834 * 13 12 11 45 45 H 1.08999 * 109.50245 * 178.65529 * 13 12 11 46 46 H 1.09001 * 109.47028 * 52.92280 * 16 14 9 47 47 H 1.08999 * 109.46988 * 172.91643 * 16 14 9 48 48 H 0.96999 * 120.00196 * 5.41814 * 17 16 14 49 49 H 0.97004 * 120.00568 * 179.97438 * 21 20 18 50 50 H 1.08005 * 120.52554 * 180.22779 * 26 6 5 51 51 H 0.96702 * 113.99335 * 89.99887 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2273 2.1359 -0.9800 6 6 5.6265 2.1265 -0.9746 7 6 6.3960 2.8536 -2.0113 8 8 6.0170 2.8468 -3.1657 9 7 7.5133 3.5270 -1.6727 10 6 7.9039 3.6685 -0.2634 11 6 8.1117 5.1548 0.0439 12 6 9.1177 5.7412 -0.9492 13 6 8.5666 5.6144 -2.3712 14 6 8.3670 4.1284 -2.7063 15 1 9.3321 3.6220 -2.7232 16 6 7.6903 3.9949 -4.0719 17 7 7.6343 2.5815 -4.4531 18 6 7.1696 2.2240 -5.6906 19 1 6.8449 2.9840 -6.3858 20 6 7.1160 0.8847 -6.0515 21 7 7.5113 -0.0416 -5.2042 22 14 6.4828 0.3970 -7.7399 23 1 7.3353 1.0166 -8.7862 24 1 6.5272 -1.0810 -7.8774 25 1 5.0834 0.8676 -7.8988 26 6 6.2780 1.4185 0.0370 27 6 5.5171 0.7520 0.9881 28 8 6.1361 0.0593 1.9770 29 7 4.1962 0.7845 0.9411 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6765 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.6867 2.6757 -1.7434 38 1 7.1164 3.2697 0.3760 39 1 8.8307 3.1231 -0.0847 40 1 7.1617 5.6813 -0.0470 41 1 8.4946 5.2665 1.0583 42 1 9.2860 6.7929 -0.7174 43 1 10.0599 5.1979 -0.8751 44 1 7.6123 6.1366 -2.4393 45 1 9.2728 6.0537 -3.0757 46 1 6.6786 4.3968 -4.0170 47 1 8.2617 4.5496 -4.8163 48 1 7.9261 1.8988 -3.8288 49 1 7.4735 -0.9776 -5.4562 50 1 7.3568 1.3895 0.0790 51 1 6.3153 0.5821 2.7706 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273004592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:00 Heat of formation + Delta-G solvation = -20.559329 kcal Electronic energy + Delta-G solvation = -32140.295358 eV Core-core repulsion = 28040.557059 eV Total energy + Delta-G solvation = -4099.738299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.15153 -40.99961 -38.49668 -38.09716 -36.61050 -35.75214 -34.34440 -33.67342 -32.82432 -31.72599 -31.44261 -28.06792 -27.72815 -26.23982 -25.16365 -24.42552 -23.84929 -23.01124 -22.24324 -21.47454 -20.47441 -19.53403 -18.92679 -18.02504 -17.56322 -17.14335 -16.88274 -16.66217 -16.50912 -15.98185 -15.77901 -15.50473 -15.37331 -15.24556 -15.03200 -14.78319 -14.64835 -14.46510 -14.12946 -13.79600 -13.68401 -13.53110 -13.34976 -13.13664 -12.98324 -12.78507 -12.73090 -12.68945 -12.38355 -12.20326 -12.13012 -12.04330 -11.88332 -11.73642 -11.61547 -11.51953 -11.39947 -10.93800 -10.85836 -10.70752 -9.96052 -9.84435 -9.54024 -8.64452 -7.87304 -5.06047 -0.25859 -0.11558 1.41166 1.45646 1.51138 1.84936 1.97878 2.53692 2.56329 2.59738 3.34967 3.45204 3.47465 3.79617 3.81462 3.87752 3.90763 3.97356 4.10038 4.11944 4.15167 4.22740 4.32294 4.36883 4.42115 4.46473 4.56497 4.58347 4.68942 4.71278 4.82065 4.84882 4.87227 4.97091 4.97159 4.99588 5.03776 5.12404 5.14452 5.19513 5.23664 5.31155 5.31649 5.42964 5.46472 5.48749 5.51853 5.77976 6.33286 6.50980 6.59153 6.83217 7.35651 7.40992 8.18779 8.41052 9.37039 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007010 B = 0.004616 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3993.400062 B = 6064.707163 C = 8778.192259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.065 4.065 4 C 0.154 3.846 5 C -0.148 4.148 6 C -0.058 4.058 7 C 0.510 3.490 8 O -0.487 6.487 9 N -0.604 5.604 10 C 0.094 3.906 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.119 4.119 14 C 0.147 3.853 15 H 0.067 0.933 16 C 0.161 3.839 17 N -0.703 5.703 18 C -0.214 4.214 19 H 0.064 0.936 20 C -0.082 4.082 21 N -0.974 5.974 22 Si 0.966 3.034 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.287 1.287 26 C -0.165 4.165 27 C 0.313 3.687 28 O -0.483 6.483 29 N -0.503 5.503 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.084 0.916 46 H 0.022 0.978 47 H 0.019 0.981 48 H 0.366 0.634 49 H 0.244 0.756 50 H 0.157 0.843 51 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 11.194 20.739 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.103 4.103 4 C 0.016 3.984 5 C -0.169 4.169 6 C -0.069 4.069 7 C 0.296 3.704 8 O -0.359 6.359 9 N -0.340 5.340 10 C -0.027 4.027 11 C -0.165 4.165 12 C -0.150 4.150 13 C -0.157 4.157 14 C 0.044 3.956 15 H 0.085 0.915 16 C 0.035 3.965 17 N -0.344 5.344 18 C -0.347 4.347 19 H 0.082 0.918 20 C -0.273 4.273 21 N -0.627 5.627 22 Si 0.796 3.204 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.213 1.213 26 C -0.187 4.187 27 C 0.134 3.866 28 O -0.293 6.293 29 N -0.224 5.224 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.157 0.843 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.040 0.960 47 H 0.037 0.963 48 H 0.198 0.802 49 H 0.053 0.947 50 H 0.174 0.826 51 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -4.429 10.338 20.189 23.110 hybrid contribution 0.413 -0.371 -1.399 1.505 sum -4.017 9.967 18.790 21.645 Atomic orbital electron populations 1.21741 0.93702 1.02258 1.02645 1.21410 0.97161 0.95296 1.01537 1.20714 0.85843 0.98870 1.04849 1.21269 0.97816 0.90588 0.88687 1.22129 0.93157 1.01704 0.99866 1.20462 0.94705 0.97502 0.94203 1.18595 0.82976 0.81168 0.87663 1.91205 1.66682 1.59249 1.18721 1.47819 1.23512 1.54486 1.08178 1.22266 1.01649 0.98655 0.80156 1.21908 1.00003 0.93829 1.00748 1.21507 0.98564 1.02349 0.92619 1.21938 1.02007 0.92737 0.99068 1.21538 0.92606 0.95027 0.86445 0.91535 1.20948 0.96802 0.86016 0.92757 1.42374 1.75138 1.02250 1.14592 1.19457 1.31860 0.91386 0.91955 0.91805 1.25370 1.04466 0.95824 1.01676 1.69813 1.56686 0.99291 1.36870 0.85301 0.78188 0.76289 0.80612 1.20157 1.22294 1.21347 1.22425 1.02484 0.98190 0.95553 1.19018 0.86710 0.90086 0.90746 1.84792 1.76745 1.39673 1.28102 1.66829 1.10189 1.18607 1.26752 0.91229 0.92252 0.92412 0.94158 0.91782 0.87698 0.88949 0.84271 0.88970 0.90261 0.92227 0.87893 0.89593 0.91051 0.92084 0.89765 0.96036 0.96338 0.80199 0.94710 0.82555 0.71622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.12 -2.54 5.79 30.60 0.18 -2.36 16 3 C -0.07 -1.36 5.61 29.85 0.17 -1.20 16 4 C 0.15 4.26 6.18 42.50 0.26 4.52 16 5 C -0.15 -4.69 9.35 22.63 0.21 -4.48 16 6 C -0.06 -1.95 5.14 -19.90 -0.10 -2.05 16 7 C 0.51 20.05 6.63 86.88 0.58 20.62 16 8 O -0.49 -24.53 10.66 -3.74 -0.04 -24.57 16 9 N -0.60 -18.84 2.97 -797.22 -2.36 -21.20 16 10 C 0.09 1.94 4.92 86.36 0.43 2.36 16 11 C -0.13 -1.93 6.08 30.67 0.19 -1.75 16 12 C -0.11 -1.80 5.88 30.62 0.18 -1.62 16 13 C -0.12 -2.73 5.40 30.82 0.17 -2.56 16 14 C 0.15 4.79 2.97 45.12 0.13 4.92 16 15 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 16 C 0.16 7.07 4.87 86.38 0.42 7.49 16 17 N -0.70 -38.88 3.17 -343.47 -1.09 -39.97 16 18 C -0.21 -13.08 9.68 84.03 0.81 -12.27 16 19 H 0.06 3.82 7.83 -2.91 -0.02 3.79 16 20 C -0.08 -5.15 5.50 84.86 0.47 -4.68 16 21 N -0.97 -64.38 13.06 21.65 0.28 -64.10 16 22 Si 0.97 50.31 29.55 68.60 2.03 52.34 16 23 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 25 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 26 C -0.17 -4.72 7.44 22.75 0.17 -4.55 16 27 C 0.31 8.49 7.74 84.78 0.66 9.15 16 28 O -0.48 -10.50 13.56 -90.01 -1.22 -11.72 16 29 N -0.50 -14.31 9.87 -297.15 -2.93 -17.25 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.50 7.94 -2.38 -0.02 1.48 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 1.76 7.86 -2.39 -0.02 1.74 16 37 H 0.14 4.43 7.94 -2.91 -0.02 4.41 16 38 H 0.09 1.78 4.77 -2.39 -0.01 1.77 16 39 H 0.08 1.44 8.12 -2.38 -0.02 1.43 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.02 1.04 6.46 -2.39 -0.02 1.03 16 47 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.37 21.74 6.85 -92.71 -0.64 21.10 16 49 H 0.24 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.16 4.00 6.65 -2.91 -0.02 3.98 16 51 H 0.42 3.93 9.06 -74.06 -0.67 3.26 16 Total: -1.00 -83.37 400.90 -0.07 -83.44 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -0.36 Total: 33.15 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.62 Total: 9.87 kcal Atomic # 7 Polarization: -136.41 SS G_CDS: -6.10 Total: -142.51 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -1.26 Total: -36.29 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.03 Total: 52.34 kcal Total: -83.37 -0.07 -83.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273004592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.882 kcal (2) G-P(sol) polarization free energy of solvation -83.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds