Wall clock time and date at job start Wed Apr 1 2020 04:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47657 * 2 1 4 4 C 1.50709 * 109.46850 * 119.99802 * 2 1 3 5 5 C 1.38600 * 119.54728 * 274.99930 * 4 2 1 6 6 C 1.38587 * 119.34852 * 179.97438 * 5 4 2 7 7 C 1.38630 * 118.48975 * 359.97438 * 6 5 4 8 8 C 1.39270 * 119.05905 * 359.97438 * 7 6 5 9 9 C 1.48165 * 119.71867 * 179.97438 * 8 7 6 10 10 O 1.21512 * 120.00315 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99664 * 180.27867 * 9 8 7 12 12 C 1.46504 * 119.99876 * 174.36386 * 11 9 8 13 13 C 1.53005 * 109.45921 * 302.53555 * 12 11 9 14 14 O 1.42909 * 109.46864 * 303.05489 * 13 12 11 15 15 C 1.53040 * 109.45991 * 182.56452 * 12 11 9 16 16 C 1.53169 * 109.32251 * 301.35603 * 15 12 11 17 17 N 1.46922 * 108.77001 * 305.35504 * 16 15 12 18 18 C 1.36942 * 120.63166 * 233.63538 * 17 16 15 19 19 H 1.08002 * 119.99652 * 148.77839 * 18 17 16 20 20 C 1.38809 * 119.99838 * 328.77768 * 18 17 16 21 21 N 1.31618 * 119.99751 * 161.64479 * 20 18 17 22 22 Si 1.86801 * 120.00145 * 341.64466 * 20 18 17 23 23 H 1.48491 * 109.47171 * 91.76490 * 22 20 18 24 24 H 1.48499 * 109.47212 * 211.77165 * 22 20 18 25 25 H 1.48504 * 109.46731 * 331.76457 * 22 20 18 26 26 C 1.46927 * 118.73685 * 53.60985 * 17 16 15 27 27 C 1.53040 * 109.46180 * 62.50528 * 12 11 9 28 28 N 1.31495 * 119.54967 * 95.25389 * 4 2 1 29 29 H 1.09005 * 109.47558 * 300.00754 * 1 2 3 30 30 H 1.09004 * 109.47174 * 60.00236 * 1 2 3 31 31 H 1.08998 * 109.47569 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47558 * 239.99246 * 2 1 3 33 33 H 1.09002 * 109.46849 * 59.99376 * 3 2 1 34 34 H 1.08996 * 109.47485 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46636 * 300.00094 * 3 2 1 36 36 H 1.08003 * 120.32777 * 359.97438 * 5 4 2 37 37 H 1.08005 * 120.75355 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.46743 * 180.02562 * 7 6 5 39 39 H 0.96994 * 120.00048 * 354.36191 * 11 9 8 40 40 H 1.08997 * 109.46806 * 63.05176 * 13 12 11 41 41 H 1.08998 * 109.47037 * 183.05662 * 13 12 11 42 42 H 0.96702 * 113.99835 * 179.97438 * 14 13 12 43 43 H 1.08998 * 109.49585 * 61.29047 * 15 12 11 44 44 H 1.09002 * 109.49854 * 181.39482 * 15 12 11 45 45 H 1.09002 * 109.58432 * 185.57252 * 16 15 12 46 46 H 1.08998 * 109.59108 * 65.14570 * 16 15 12 47 47 H 0.97001 * 119.99838 * 179.97438 * 21 20 18 48 48 H 1.09005 * 109.58637 * 186.60618 * 26 17 16 49 49 H 1.09001 * 109.70104 * 66.25535 * 26 17 16 50 50 H 1.08998 * 109.49722 * 178.60688 * 27 12 11 51 51 H 1.09001 * 109.49718 * 298.70894 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 2.1609 -0.0099 2.4195 6 6 2.6227 -0.6673 3.5487 7 6 2.9410 -2.0128 3.4468 8 6 2.7859 -2.6535 2.2200 9 6 3.1223 -4.0910 2.0944 10 8 3.5310 -4.7059 3.0594 11 7 2.9797 -4.7153 0.9084 12 6 3.4274 -6.1014 0.7518 13 6 4.9145 -6.1989 1.0983 14 8 5.6564 -5.3010 0.2703 15 6 3.2112 -6.5464 -0.6964 16 6 1.7269 -6.4148 -1.0508 17 7 0.9371 -7.1650 -0.0649 18 6 0.0352 -8.1129 -0.4690 19 1 -0.1616 -8.9719 0.1554 20 6 -0.6261 -7.9697 -1.6810 21 7 -1.2017 -9.0111 -2.2436 22 14 -0.6991 -6.2991 -2.5135 23 1 0.4463 -6.1614 -3.4484 24 1 -1.9719 -6.1775 -3.2687 25 1 -0.6299 -5.2301 -1.4850 26 6 1.1338 -6.8792 1.3628 27 6 2.6249 -7.0056 1.6902 28 7 2.3471 -1.9852 1.1603 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.9039 1.0381 2.4656 37 1 2.7321 -0.1434 4.4869 38 1 3.3032 -2.5565 4.3067 39 1 2.5806 -4.2468 0.1587 40 1 5.0617 -5.9335 2.1452 41 1 5.2607 -7.2186 0.9298 42 1 6.6091 -5.3095 0.4359 43 1 3.8011 -5.9168 -1.3624 44 1 3.5211 -7.5855 -0.8078 45 1 1.5514 -6.8226 -2.0463 46 1 1.4375 -5.3642 -1.0279 47 1 -1.6641 -8.9110 -3.0904 48 1 0.5668 -7.5935 1.9599 49 1 0.7952 -5.8672 1.5850 50 1 2.9404 -8.0403 1.5562 51 1 2.7976 -6.7028 2.7229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274916938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:03 Heat of formation + Delta-G solvation = -27.812415 kcal Electronic energy + Delta-G solvation = -32468.981711 eV Core-core repulsion = 28368.928894 eV Total energy + Delta-G solvation = -4100.052817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.94109 -39.90037 -37.66879 -36.25434 -35.70477 -34.18701 -32.96783 -31.86755 -30.84772 -30.42267 -30.07220 -27.47398 -26.91654 -24.83724 -24.07654 -23.61997 -22.88221 -21.81592 -20.86794 -20.11787 -18.85512 -17.94242 -17.15317 -16.95562 -16.77495 -16.05654 -15.45727 -15.23618 -15.10159 -14.94498 -14.54546 -14.43246 -14.12952 -13.88986 -13.80769 -13.66409 -13.45251 -13.26593 -12.97487 -12.72938 -12.51446 -12.29132 -12.23902 -12.15027 -11.80056 -11.67116 -11.64246 -11.42948 -11.20967 -11.15806 -10.74008 -10.57454 -10.29809 -10.11803 -10.06800 -10.02747 -9.78981 -9.71161 -9.50858 -9.22953 -9.16697 -8.68887 -8.56055 -6.87993 -5.92646 -3.31816 0.55635 1.03935 2.80698 3.25721 3.34227 3.49856 3.54323 3.79490 3.85838 4.35492 4.36573 4.55624 4.61939 4.74469 4.79239 4.87704 4.94188 5.02745 5.03191 5.15088 5.22447 5.30502 5.37788 5.41929 5.46977 5.50260 5.54526 5.63267 5.64141 5.72727 5.80094 5.82211 5.91643 5.93287 6.03218 6.05330 6.05683 6.12990 6.27925 6.40338 6.40970 6.52214 6.64526 6.68877 6.70565 6.81746 6.98695 7.58588 7.72399 7.88847 8.03076 8.37354 8.39781 8.97882 9.74706 10.14855 11.23552 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009600 B = 0.004261 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.990440 B = 6569.179031 C = 8287.580173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C -0.146 4.146 4 C 0.136 3.864 5 C -0.153 4.153 6 C -0.081 4.081 7 C -0.121 4.121 8 C 0.091 3.909 9 C 0.575 3.425 10 O -0.541 6.541 11 N -0.680 5.680 12 C 0.190 3.810 13 C 0.063 3.937 14 O -0.567 6.567 15 C -0.134 4.134 16 C 0.127 3.873 17 N -0.604 5.604 18 C -0.259 4.259 19 H 0.084 0.916 20 C 0.026 3.974 21 N -0.910 5.910 22 Si 0.883 3.117 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.155 3.845 27 C -0.145 4.145 28 N -0.455 5.455 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.410 0.590 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.371 0.629 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.022 0.978 47 H 0.262 0.738 48 H 0.063 0.937 49 H 0.020 0.980 50 H 0.071 0.929 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.144 19.951 8.620 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.204 4.204 4 C -0.004 4.004 5 C -0.173 4.173 6 C -0.107 4.107 7 C -0.142 4.142 8 C -0.047 4.047 9 C 0.359 3.641 10 O -0.419 6.419 11 N -0.330 5.330 12 C 0.104 3.896 13 C -0.015 4.015 14 O -0.371 6.371 15 C -0.173 4.173 16 C 0.001 3.999 17 N -0.328 5.328 18 C -0.387 4.387 19 H 0.102 0.898 20 C -0.173 4.173 21 N -0.553 5.553 22 Si 0.713 3.287 23 H -0.215 1.215 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.029 3.971 27 C -0.185 4.185 28 N -0.166 5.166 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.247 0.753 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.217 0.783 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.038 0.962 50 H 0.090 0.910 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.647 19.043 8.128 23.282 hybrid contribution 0.358 1.410 0.103 1.458 sum 11.004 20.453 8.231 24.641 Atomic orbital electron populations 1.21816 0.93342 1.02846 1.02075 1.20089 0.96417 0.95298 0.94970 1.21923 1.01302 0.94825 1.02336 1.21247 0.94711 0.89413 0.95039 1.22176 1.00217 1.01624 0.93293 1.21594 0.96094 0.94061 0.98943 1.22103 0.98506 0.95006 0.98537 1.21270 0.98482 0.94851 0.90138 1.17765 0.78010 0.84867 0.83432 1.90682 1.47478 1.65693 1.38019 1.45823 1.60470 1.13718 1.12964 1.20381 0.90941 0.80885 0.97362 1.22702 0.91578 0.92467 0.94771 1.86497 1.22296 1.64948 1.63347 1.22260 0.99467 1.02091 0.93532 1.21320 0.89059 0.94895 0.94626 1.44346 1.43954 1.44507 1.00022 1.18917 1.15646 0.99207 1.04972 0.89840 1.25362 0.97306 0.96914 0.97740 1.69818 1.38872 1.28636 1.17994 0.86924 0.75944 0.86712 0.79125 1.21507 1.23173 1.19473 1.20828 0.92265 0.98123 0.85867 1.22404 0.98028 0.98760 0.99310 1.67395 1.09308 1.08954 1.30975 0.92560 0.91698 0.91919 0.88894 0.92222 0.92354 0.91674 0.84308 0.84203 0.83514 0.75287 0.91720 0.93088 0.78312 0.91311 0.90178 0.90709 0.95975 0.92803 0.91823 0.96211 0.91018 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.17 37.15 0.34 -0.99 16 2 C -0.05 -0.47 3.23 -91.77 -0.30 -0.76 16 3 C -0.15 -1.00 8.62 37.16 0.32 -0.68 16 4 C 0.14 1.58 5.79 -82.60 -0.48 1.10 16 5 C -0.15 -1.42 9.18 -39.32 -0.36 -1.78 16 6 C -0.08 -0.75 10.17 -39.31 -0.40 -1.15 16 7 C -0.12 -1.45 9.63 -39.05 -0.38 -1.83 16 8 C 0.09 1.34 6.75 -83.01 -0.56 0.78 16 9 C 0.57 9.57 7.22 -12.18 -0.09 9.48 16 10 O -0.54 -9.54 12.60 5.36 0.07 -9.47 16 11 N -0.68 -11.57 3.92 -48.40 -0.19 -11.76 16 12 C 0.19 3.23 0.44 -131.77 -0.06 3.17 16 13 C 0.06 0.93 5.63 37.16 0.21 1.14 16 14 O -0.57 -7.88 12.89 -35.23 -0.45 -8.34 16 15 C -0.13 -2.45 4.86 -26.62 -0.13 -2.58 16 16 C 0.13 2.79 3.93 -3.72 -0.01 2.78 16 17 N -0.60 -14.55 2.72 -172.33 -0.47 -15.02 16 18 C -0.26 -7.32 10.01 -15.06 -0.15 -7.47 16 19 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 20 C 0.03 0.75 5.24 -17.43 -0.09 0.66 16 21 N -0.91 -28.12 13.97 55.49 0.78 -27.34 16 22 Si 0.88 22.67 24.37 -169.99 -4.14 18.53 16 23 H -0.29 -7.11 6.65 56.52 0.38 -6.73 16 24 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 25 H -0.27 -6.86 6.68 56.52 0.38 -6.48 16 26 C 0.16 3.26 6.26 -3.71 -0.02 3.23 16 27 C -0.15 -2.61 4.70 -26.61 -0.13 -2.74 16 28 N -0.45 -6.56 9.46 -6.06 -0.06 -6.62 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.33 6.48 -51.93 -0.34 0.00 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.14 0.88 6.30 -52.48 -0.33 0.55 16 37 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.15 1.65 7.64 -52.49 -0.40 1.25 16 39 H 0.41 7.20 6.54 -40.82 -0.27 6.93 16 40 H 0.06 1.00 6.26 -51.93 -0.33 0.67 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.37 3.43 9.12 45.56 0.42 3.85 16 43 H 0.07 1.19 7.73 -51.93 -0.40 0.79 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 45 H 0.07 1.80 4.83 -51.93 -0.25 1.55 16 46 H 0.02 0.49 5.77 -51.93 -0.30 0.19 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 49 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 50 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 51 H 0.08 1.42 6.21 -51.93 -0.32 1.10 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -33.67 391.46 -8.02 -41.69 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.17 Total: 10.06 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.28 Total: 2.38 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.06 Total: -60.74 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.39 Total: -17.81 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.14 Total: 18.53 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.67 -8.02 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274916938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.882 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds