Wall clock time and date at job start Wed Apr 1 2020 04:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47657 * 2 1 4 4 C 1.50709 * 109.46850 * 119.99802 * 2 1 3 5 5 C 1.38600 * 119.54728 * 274.99930 * 4 2 1 6 6 C 1.38587 * 119.34852 * 179.97438 * 5 4 2 7 7 C 1.38630 * 118.48975 * 359.97438 * 6 5 4 8 8 C 1.39270 * 119.05905 * 359.97438 * 7 6 5 9 9 C 1.48165 * 119.71867 * 179.97438 * 8 7 6 10 10 O 1.21512 * 120.00315 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99664 * 180.27867 * 9 8 7 12 12 C 1.46504 * 119.99876 * 174.36386 * 11 9 8 13 13 C 1.53005 * 109.45921 * 302.53555 * 12 11 9 14 14 O 1.42909 * 109.46864 * 303.05489 * 13 12 11 15 15 C 1.53040 * 109.45991 * 182.56452 * 12 11 9 16 16 C 1.53169 * 109.32251 * 301.35603 * 15 12 11 17 17 N 1.46922 * 108.77001 * 305.35504 * 16 15 12 18 18 C 1.36942 * 120.63166 * 233.63538 * 17 16 15 19 19 H 1.08002 * 119.99652 * 148.77839 * 18 17 16 20 20 C 1.38809 * 119.99838 * 328.77768 * 18 17 16 21 21 N 1.31618 * 119.99751 * 161.64479 * 20 18 17 22 22 Si 1.86801 * 120.00145 * 341.64466 * 20 18 17 23 23 H 1.48491 * 109.47171 * 91.76490 * 22 20 18 24 24 H 1.48499 * 109.47212 * 211.77165 * 22 20 18 25 25 H 1.48504 * 109.46731 * 331.76457 * 22 20 18 26 26 C 1.46927 * 118.73685 * 53.60985 * 17 16 15 27 27 C 1.53040 * 109.46180 * 62.50528 * 12 11 9 28 28 N 1.31495 * 119.54967 * 95.25389 * 4 2 1 29 29 H 1.09005 * 109.47558 * 300.00754 * 1 2 3 30 30 H 1.09004 * 109.47174 * 60.00236 * 1 2 3 31 31 H 1.08998 * 109.47569 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47558 * 239.99246 * 2 1 3 33 33 H 1.09002 * 109.46849 * 59.99376 * 3 2 1 34 34 H 1.08996 * 109.47485 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46636 * 300.00094 * 3 2 1 36 36 H 1.08003 * 120.32777 * 359.97438 * 5 4 2 37 37 H 1.08005 * 120.75355 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.46743 * 180.02562 * 7 6 5 39 39 H 0.96994 * 120.00048 * 354.36191 * 11 9 8 40 40 H 1.08997 * 109.46806 * 63.05176 * 13 12 11 41 41 H 1.08998 * 109.47037 * 183.05662 * 13 12 11 42 42 H 0.96702 * 113.99835 * 179.97438 * 14 13 12 43 43 H 1.08998 * 109.49585 * 61.29047 * 15 12 11 44 44 H 1.09002 * 109.49854 * 181.39482 * 15 12 11 45 45 H 1.09002 * 109.58432 * 185.57252 * 16 15 12 46 46 H 1.08998 * 109.59108 * 65.14570 * 16 15 12 47 47 H 0.97001 * 119.99838 * 179.97438 * 21 20 18 48 48 H 1.09005 * 109.58637 * 186.60618 * 26 17 16 49 49 H 1.09001 * 109.70104 * 66.25535 * 26 17 16 50 50 H 1.08998 * 109.49722 * 178.60688 * 27 12 11 51 51 H 1.09001 * 109.49718 * 298.70894 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 2.1609 -0.0099 2.4195 6 6 2.6227 -0.6673 3.5487 7 6 2.9410 -2.0128 3.4468 8 6 2.7859 -2.6535 2.2200 9 6 3.1223 -4.0910 2.0944 10 8 3.5310 -4.7059 3.0594 11 7 2.9797 -4.7153 0.9084 12 6 3.4274 -6.1014 0.7518 13 6 4.9145 -6.1989 1.0983 14 8 5.6564 -5.3010 0.2703 15 6 3.2112 -6.5464 -0.6964 16 6 1.7269 -6.4148 -1.0508 17 7 0.9371 -7.1650 -0.0649 18 6 0.0352 -8.1129 -0.4690 19 1 -0.1616 -8.9719 0.1554 20 6 -0.6261 -7.9697 -1.6810 21 7 -1.2017 -9.0111 -2.2436 22 14 -0.6991 -6.2991 -2.5135 23 1 0.4463 -6.1614 -3.4484 24 1 -1.9719 -6.1775 -3.2687 25 1 -0.6299 -5.2301 -1.4850 26 6 1.1338 -6.8792 1.3628 27 6 2.6249 -7.0056 1.6902 28 7 2.3471 -1.9852 1.1603 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.9039 1.0381 2.4656 37 1 2.7321 -0.1434 4.4869 38 1 3.3032 -2.5565 4.3067 39 1 2.5806 -4.2468 0.1587 40 1 5.0617 -5.9335 2.1452 41 1 5.2607 -7.2186 0.9298 42 1 6.6091 -5.3095 0.4359 43 1 3.8011 -5.9168 -1.3624 44 1 3.5211 -7.5855 -0.8078 45 1 1.5514 -6.8226 -2.0463 46 1 1.4375 -5.3642 -1.0279 47 1 -1.6641 -8.9110 -3.0904 48 1 0.5668 -7.5935 1.9599 49 1 0.7952 -5.8672 1.5850 50 1 2.9404 -8.0403 1.5562 51 1 2.7976 -6.7028 2.7229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274916938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:02 Heat of formation + Delta-G solvation = -52.713415 kcal Electronic energy + Delta-G solvation = -32470.061499 eV Core-core repulsion = 28368.928894 eV Total energy + Delta-G solvation = -4101.132605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.01344 -41.04646 -39.06534 -37.56793 -36.47111 -35.73409 -34.15071 -33.50276 -32.27149 -32.06538 -31.10223 -28.56182 -28.08157 -25.80768 -25.42927 -24.87254 -24.52470 -23.00783 -22.37329 -21.08978 -20.31702 -19.12710 -18.77000 -18.18807 -17.75470 -17.28211 -16.99987 -16.48329 -16.37907 -16.07386 -15.84200 -15.56002 -15.43319 -15.36689 -15.13709 -14.81985 -14.70703 -14.33756 -14.19978 -14.06648 -13.80243 -13.67546 -13.50761 -13.35050 -13.26625 -12.84519 -12.80514 -12.47970 -12.45253 -12.19961 -12.17703 -12.10257 -11.83306 -11.75332 -11.59514 -11.48348 -11.22822 -10.93010 -10.82233 -10.67713 -10.37053 -10.13018 -9.91678 -8.91458 -8.19667 -5.55702 -0.35392 0.23631 1.26723 1.37717 1.47434 1.72538 2.07125 2.38417 2.83137 2.95544 3.04406 3.16792 3.34554 3.52540 3.71180 3.84868 3.85703 4.01592 4.07113 4.13281 4.14669 4.26488 4.28912 4.30516 4.36435 4.46468 4.48354 4.57268 4.59018 4.72861 4.73212 4.79581 4.82725 4.90824 4.94280 4.96632 4.98935 5.04541 5.05523 5.10438 5.11338 5.22734 5.25243 5.33855 5.40566 5.55238 5.63432 5.86537 6.11139 6.45419 6.81876 6.86941 6.88348 7.15647 7.57334 8.00718 9.00347 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009600 B = 0.004261 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.990440 B = 6569.179031 C = 8287.580173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C -0.140 4.140 4 C 0.120 3.880 5 C -0.139 4.139 6 C -0.072 4.072 7 C -0.126 4.126 8 C 0.057 3.943 9 C 0.572 3.428 10 O -0.558 6.558 11 N -0.684 5.684 12 C 0.188 3.812 13 C 0.075 3.925 14 O -0.578 6.578 15 C -0.122 4.122 16 C 0.125 3.875 17 N -0.614 5.614 18 C -0.251 4.251 19 H 0.052 0.948 20 C -0.026 4.026 21 N -0.955 5.955 22 Si 0.944 3.056 23 H -0.271 1.271 24 H -0.308 1.308 25 H -0.268 1.268 26 C 0.156 3.844 27 C -0.133 4.133 28 N -0.485 5.485 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.149 0.851 39 H 0.406 0.594 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.393 0.607 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.055 0.945 46 H 0.025 0.975 47 H 0.263 0.737 48 H 0.055 0.945 49 H 0.016 0.984 50 H 0.074 0.926 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.675 23.651 9.530 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.021 4.021 5 C -0.159 4.159 6 C -0.097 4.097 7 C -0.147 4.147 8 C -0.080 4.080 9 C 0.358 3.642 10 O -0.437 6.437 11 N -0.334 5.334 12 C 0.102 3.898 13 C -0.003 4.003 14 O -0.385 6.385 15 C -0.161 4.161 16 C 0.000 4.000 17 N -0.339 5.339 18 C -0.380 4.380 19 H 0.070 0.930 20 C -0.221 4.221 21 N -0.600 5.600 22 Si 0.773 3.227 23 H -0.197 1.197 24 H -0.237 1.237 25 H -0.193 1.193 26 C 0.031 3.969 27 C -0.172 4.172 28 N -0.197 5.197 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.194 0.806 37 H 0.198 0.802 38 H 0.167 0.833 39 H 0.242 0.758 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.242 0.758 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.034 0.966 50 H 0.093 0.907 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.234 22.763 9.060 27.385 hybrid contribution -0.120 0.307 -0.102 0.345 sum 12.114 23.070 8.958 27.554 Atomic orbital electron populations 1.21799 0.93253 1.01231 1.03500 1.20147 0.96415 0.96753 0.93522 1.21894 1.01165 0.92815 1.03854 1.21720 0.94734 0.88836 0.96796 1.22593 0.98080 1.03099 0.92087 1.22049 0.94293 0.92807 1.00571 1.22270 0.98440 0.96427 0.97524 1.21100 1.01242 0.94047 0.91583 1.18133 0.77335 0.85895 0.82863 1.90649 1.48329 1.66456 1.38308 1.45829 1.60823 1.13532 1.13180 1.20358 0.92641 0.80859 0.95934 1.22463 0.89957 0.93474 0.94443 1.86438 1.24196 1.64775 1.63124 1.22100 0.96595 1.02532 0.94849 1.21314 0.91263 0.94264 0.93110 1.44412 1.43765 1.44058 1.01622 1.18847 1.15992 0.98942 1.04260 0.93034 1.25927 0.97586 0.99846 0.98768 1.69935 1.40711 1.30553 1.18832 0.85933 0.76066 0.82380 0.78357 1.19706 1.23662 1.19302 1.20867 0.94519 0.97447 0.84084 1.22233 0.95741 0.99369 0.99893 1.67302 1.10379 1.10544 1.31446 0.91081 0.90340 0.94983 0.90802 0.90250 0.92506 0.90649 0.80642 0.80199 0.83310 0.75781 0.92255 0.91469 0.75790 0.89790 0.90186 0.92694 0.95681 0.92830 0.92686 0.96620 0.90729 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.17 71.98 0.66 -1.72 16 2 C -0.05 -0.86 3.23 -11.54 -0.04 -0.89 16 3 C -0.14 -1.46 8.62 71.98 0.62 -0.84 16 4 C 0.12 2.57 5.79 42.70 0.25 2.81 16 5 C -0.14 -2.06 9.18 22.44 0.21 -1.86 16 6 C -0.07 -1.07 10.17 22.45 0.23 -0.84 16 7 C -0.13 -2.81 9.63 22.61 0.22 -2.60 16 8 C 0.06 1.66 6.75 41.89 0.28 1.95 16 9 C 0.57 18.93 7.22 86.88 0.63 19.55 16 10 O -0.56 -19.52 12.60 -3.75 -0.05 -19.57 16 11 N -0.68 -23.09 3.92 -425.32 -1.67 -24.75 16 12 C 0.19 6.23 0.44 3.63 0.00 6.24 16 13 C 0.08 2.09 5.63 71.98 0.41 2.49 16 14 O -0.58 -14.86 12.89 -148.98 -1.92 -16.78 16 15 C -0.12 -4.33 4.86 30.66 0.15 -4.18 16 16 C 0.13 5.50 3.93 86.36 0.34 5.84 16 17 N -0.61 -30.01 2.72 -699.14 -1.90 -31.91 16 18 C -0.25 -14.61 10.01 84.03 0.84 -13.77 16 19 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 20 C -0.03 -1.55 5.24 84.86 0.44 -1.10 16 21 N -0.95 -60.71 13.97 21.65 0.30 -60.41 16 22 Si 0.94 47.82 24.37 68.60 1.67 49.50 16 23 H -0.27 -12.88 6.65 99.48 0.66 -12.21 16 24 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 25 H -0.27 -13.36 6.68 99.48 0.66 -12.69 16 26 C 0.16 6.66 6.26 86.36 0.54 7.20 16 27 C -0.13 -4.74 4.70 30.67 0.14 -4.60 16 28 N -0.48 -13.76 9.46 -173.08 -1.64 -15.40 16 29 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.08 0.51 6.48 -2.39 -0.02 0.50 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.18 1.26 6.30 -2.91 -0.02 1.24 16 37 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.15 3.16 7.64 -2.91 -0.02 3.14 16 39 H 0.41 14.27 6.54 -92.71 -0.61 13.66 16 40 H 0.06 1.74 6.26 -2.39 -0.01 1.72 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.39 6.29 9.12 -74.06 -0.68 5.61 16 43 H 0.08 2.76 7.73 -2.39 -0.02 2.74 16 44 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 45 H 0.05 2.62 4.83 -2.39 -0.01 2.61 16 46 H 0.03 1.10 5.77 -2.39 -0.01 1.09 16 47 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 48 H 0.05 2.40 7.93 -2.38 -0.02 2.38 16 49 H 0.02 0.69 7.74 -2.39 -0.02 0.67 16 50 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 51 H 0.08 2.98 6.21 -2.39 -0.01 2.96 16 Total: -1.00 -75.51 391.46 0.31 -75.20 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.41 Total: 30.45 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 5.92 Total: 13.68 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -4.90 Total: -132.48 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.97 Total: -36.35 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.67 Total: 49.50 kcal Total: -75.51 0.31 -75.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274916938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.483 kcal (2) G-P(sol) polarization free energy of solvation -75.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds