Wall clock time and date at job start Wed Apr 1 2020 04:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.50700 * 109.47188 * 180.02562 * 3 2 1 5 5 C 1.38024 * 119.51455 * 125.00197 * 4 3 2 6 6 C 1.39932 * 119.13035 * 179.97438 * 5 4 3 7 7 C 1.48165 * 120.88961 * 179.97438 * 6 5 4 8 8 O 1.21511 * 120.00192 * 189.68512 * 7 6 5 9 9 N 1.34778 * 119.99885 * 9.67928 * 7 6 5 10 10 C 1.47492 * 127.03499 * 6.16025 * 9 7 6 11 11 C 1.54003 * 107.08180 * 154.51308 * 10 9 7 12 12 H 1.09004 * 110.32550 * 242.40971 * 11 10 9 13 13 C 1.53003 * 110.32376 * 120.30434 * 11 10 9 14 14 C 1.54613 * 105.04791 * 1.30773 * 11 10 9 15 15 H 1.09004 * 110.73889 * 263.51358 * 14 11 10 16 16 C 1.52994 * 110.73989 * 140.36495 * 14 11 10 17 17 N 1.46502 * 109.46992 * 174.99898 * 16 14 11 18 18 C 1.36940 * 120.00176 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99575 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99876 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00283 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46726 * 89.99751 * 22 20 18 24 24 H 1.48496 * 109.47119 * 210.00330 * 22 20 18 25 25 H 1.48494 * 109.46820 * 330.00456 * 22 20 18 26 26 C 1.48116 * 127.03488 * 185.83917 * 9 7 6 27 27 C 1.39607 * 118.21934 * 0.02562 * 6 5 4 28 28 C 1.38857 * 118.94679 * 359.97438 * 27 6 5 29 29 O 1.35687 * 119.62025 * 179.97438 * 28 27 6 30 30 N 1.31881 * 119.51325 * 304.72371 * 4 3 2 31 31 H 1.08998 * 109.47061 * 59.99909 * 1 2 3 32 32 H 1.08996 * 109.47141 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46378 * 299.99879 * 1 2 3 34 34 H 1.08997 * 109.47580 * 120.00109 * 2 1 3 35 35 H 1.09000 * 109.47014 * 240.00495 * 2 1 3 36 36 H 1.09008 * 109.47328 * 300.00133 * 3 2 1 37 37 H 1.08994 * 109.47427 * 60.00121 * 3 2 1 38 38 H 1.07994 * 120.43336 * 359.95309 * 5 4 3 39 39 H 1.08996 * 109.91024 * 273.87650 * 10 9 7 40 40 H 1.09006 * 109.90882 * 34.96282 * 10 9 7 41 41 H 1.08999 * 109.47072 * 61.45080 * 13 11 10 42 42 H 1.09002 * 109.47028 * 181.45005 * 13 11 10 43 43 H 1.09001 * 109.46955 * 301.44890 * 13 11 10 44 44 H 1.08996 * 109.47110 * 295.00051 * 16 14 11 45 45 H 1.09003 * 109.47397 * 55.00206 * 16 14 11 46 46 H 0.97001 * 120.00188 * 0.02562 * 17 16 14 47 47 H 0.97000 * 119.99994 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.66332 * 337.77770 * 26 9 7 49 49 H 1.09007 * 110.66029 * 100.88511 * 26 9 7 50 50 H 1.08002 * 120.52435 * 179.97438 * 27 6 5 51 51 H 0.96698 * 114.00084 * 89.99969 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2266 2.1316 -0.9847 6 6 5.6259 2.1267 -0.9773 7 6 6.3946 2.8528 -2.0151 8 8 7.5966 2.6972 -2.1011 9 7 5.7605 3.6859 -2.8639 10 6 4.3416 4.0861 -2.8218 11 6 4.2375 5.4572 -3.5153 12 1 3.8851 6.2116 -2.8117 13 6 3.2966 5.3739 -4.7189 14 6 5.6764 5.7838 -3.9771 15 1 6.1779 6.4257 -3.2528 16 6 5.6664 6.4363 -5.3608 17 7 7.0277 6.8418 -5.7194 18 6 7.2661 7.4522 -6.9218 19 1 6.4503 7.6352 -7.6056 20 6 8.5560 7.8359 -7.2618 21 7 8.7849 8.4231 -8.4174 22 14 9.9668 7.5202 -6.0788 23 1 10.5567 6.1859 -6.3568 24 1 11.0050 8.5671 -6.2559 25 1 9.4602 7.5563 -4.6835 26 6 6.3477 4.3920 -4.0260 27 6 6.2782 1.4184 0.0336 28 6 5.5179 0.7519 0.9853 29 8 6.1377 0.0588 1.9735 30 7 4.1971 0.7886 0.9423 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3632 0.5138 0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 1.6767 1.9564 -0.8900 37 1 1.6768 1.9563 0.8899 38 1 3.6854 2.6673 -1.7505 39 1 3.7335 3.3541 -3.3532 40 1 4.0085 4.1640 -1.7868 41 1 2.2989 5.0932 -4.3815 42 1 3.2532 6.3440 -5.2140 43 1 3.6675 4.6250 -5.4188 44 1 5.2941 5.7231 -6.0962 45 1 5.0187 7.3129 -5.3445 46 1 7.7603 6.6778 -5.1051 47 1 9.6863 8.6916 -8.6548 48 1 7.4282 4.4829 -3.9151 49 1 6.0973 3.8789 -4.9546 50 1 7.3570 1.3894 0.0746 51 1 6.3179 0.5813 2.7670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279162889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:30 Heat of formation + Delta-G solvation = -16.678280 kcal Electronic energy + Delta-G solvation = -30680.218886 eV Core-core repulsion = 26580.648881 eV Total energy + Delta-G solvation = -4099.570004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37452 -40.09838 -38.25842 -37.74723 -35.28123 -35.01710 -33.37233 -32.65707 -31.47617 -31.12025 -29.49517 -27.40896 -27.12126 -25.82920 -24.63828 -23.25636 -22.98087 -21.85458 -21.67997 -20.00602 -19.39692 -18.95684 -17.71676 -17.42873 -16.69662 -16.49788 -16.17153 -15.73176 -15.51904 -15.25343 -15.08767 -14.73957 -14.60609 -14.20588 -14.05698 -13.79979 -13.41892 -13.17875 -12.96644 -12.87986 -12.63513 -12.61119 -12.42654 -12.30982 -12.14033 -12.02181 -11.96812 -11.69897 -11.57461 -11.28279 -11.09621 -10.94136 -10.65187 -10.58560 -10.47849 -10.35040 -10.24036 -10.09155 -9.74558 -9.61106 -9.24708 -8.94422 -8.87764 -7.26468 -5.79046 -3.15182 0.29208 0.52765 2.50738 2.57678 3.09737 3.34424 3.38045 3.41753 3.46374 3.90302 4.02514 4.29004 4.44709 4.49833 4.57397 4.58214 4.64328 4.65248 4.67317 4.81046 4.94541 5.02069 5.10541 5.14401 5.22056 5.23824 5.32567 5.36600 5.37647 5.44895 5.51974 5.55307 5.56350 5.61098 5.65613 5.68885 5.81304 5.82156 5.91787 5.94707 5.97222 6.00459 6.08286 6.14727 6.26595 6.55702 6.66045 7.04007 7.26485 7.44794 7.83958 7.95802 8.39684 9.18200 9.90885 10.09552 11.39091 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.002470 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.445858 B =11335.021200 C =12957.332950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.070 4.070 4 C 0.152 3.848 5 C -0.174 4.174 6 C -0.060 4.060 7 C 0.573 3.427 8 O -0.525 6.525 9 N -0.611 5.611 10 C 0.090 3.910 11 C -0.098 4.098 12 H 0.086 0.914 13 C -0.148 4.148 14 C -0.109 4.109 15 H 0.083 0.917 16 C 0.169 3.831 17 N -0.758 5.758 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.112 3.888 27 C -0.136 4.136 28 C 0.312 3.688 29 O -0.478 6.478 30 N -0.486 5.486 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.166 0.834 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.033 0.967 46 H 0.361 0.639 47 H 0.260 0.740 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.153 0.847 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.723 -14.805 20.815 31.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.107 4.107 4 C 0.014 3.986 5 C -0.194 4.194 6 C -0.071 4.071 7 C 0.361 3.639 8 O -0.401 6.401 9 N -0.344 5.344 10 C -0.033 4.033 11 C -0.117 4.117 12 H 0.104 0.896 13 C -0.205 4.205 14 C -0.128 4.128 15 H 0.101 0.899 16 C 0.042 3.958 17 N -0.403 5.403 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.713 3.287 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.009 4.009 27 C -0.158 4.158 28 C 0.133 3.867 29 O -0.285 6.285 30 N -0.206 5.206 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.182 0.818 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.193 0.807 47 H 0.070 0.930 48 H 0.106 0.894 49 H 0.101 0.899 50 H 0.171 0.829 51 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -17.481 -15.772 20.860 31.456 hybrid contribution 1.764 0.578 0.575 1.944 sum -15.717 -15.194 21.435 30.616 Atomic orbital electron populations 1.21783 0.95389 1.01913 1.01901 1.21451 0.95749 0.95340 1.03021 1.20653 0.87509 0.98901 1.03683 1.21004 0.96703 0.91539 0.89358 1.23145 0.93947 1.01173 1.01121 1.20206 0.93652 0.97750 0.95516 1.17716 0.86525 0.79095 0.80531 1.90823 1.13625 1.64282 1.71411 1.48676 1.11516 1.45058 1.29173 1.22774 0.82433 0.96790 1.01262 1.22073 0.96181 0.95459 0.98019 0.89551 1.21933 0.97837 1.03497 0.97247 1.22524 0.94586 0.95778 0.99942 0.89886 1.20695 0.88047 0.96299 0.90772 1.42770 1.03727 1.73495 1.20341 1.19019 0.94768 1.30652 0.93074 0.89165 1.24670 0.97063 1.00525 0.96761 1.69702 1.20665 1.46010 1.21694 0.86585 0.83285 0.77830 0.81044 1.20941 1.21686 1.20364 1.22613 0.99895 0.91243 0.87139 1.22239 1.02708 0.95959 0.94870 1.18937 0.86608 0.90727 0.90381 1.84811 1.76953 1.39222 1.27511 1.66763 1.09908 1.17964 1.25994 0.92587 0.92567 0.92578 0.90809 0.92075 0.89776 0.89527 0.81753 0.90474 0.89827 0.92730 0.91006 0.91953 0.94764 0.94882 0.80684 0.93029 0.89420 0.89934 0.82908 0.74013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.75 5.79 -26.73 -0.15 -0.90 16 3 C -0.07 -0.41 5.61 -27.88 -0.16 -0.57 16 4 C 0.15 1.32 6.17 -82.65 -0.51 0.81 16 5 C -0.17 -1.53 8.03 -39.03 -0.31 -1.84 16 6 C -0.06 -0.69 5.88 -104.68 -0.62 -1.30 16 7 C 0.57 8.05 7.84 -12.18 -0.10 7.95 16 8 O -0.52 -9.38 16.67 5.36 0.09 -9.29 16 9 N -0.61 -7.60 3.29 -170.96 -0.56 -8.16 16 10 C 0.09 0.77 4.68 -2.98 -0.01 0.76 16 11 C -0.10 -0.93 3.52 -89.25 -0.31 -1.25 16 12 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 13 C -0.15 -1.31 7.79 37.16 0.29 -1.02 16 14 C -0.11 -1.48 2.98 -88.94 -0.27 -1.75 16 15 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 16 C 0.17 2.93 4.45 -4.04 -0.02 2.92 16 17 N -0.76 -17.35 5.33 -59.91 -0.32 -17.67 16 18 C -0.25 -6.81 10.47 -15.06 -0.16 -6.96 16 19 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -29.18 13.97 55.49 0.78 -28.40 16 22 Si 0.88 22.34 27.74 -169.99 -4.71 17.62 16 23 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 26 C 0.11 1.62 6.47 -2.32 -0.01 1.60 16 27 C -0.14 -1.50 9.61 -38.84 -0.37 -1.88 16 28 C 0.31 3.25 7.74 -17.17 -0.13 3.11 16 29 O -0.48 -4.20 13.56 -18.76 -0.25 -4.45 16 30 N -0.49 -5.04 9.88 -9.59 -0.09 -5.14 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.57 7.95 -51.93 -0.41 0.16 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.34 7.86 -51.92 -0.41 -0.07 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.17 1.08 3.54 -52.49 -0.19 0.90 16 39 H 0.08 0.53 6.99 -51.93 -0.36 0.17 16 40 H 0.08 0.57 5.95 -51.93 -0.31 0.27 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.72 6.77 -51.93 -0.35 0.36 16 43 H 0.06 0.59 7.52 -51.93 -0.39 0.20 16 44 H 0.03 0.59 6.82 -51.93 -0.35 0.24 16 45 H 0.03 0.58 7.38 -51.93 -0.38 0.20 16 46 H 0.36 8.25 5.53 -40.82 -0.23 8.02 16 47 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 48 H 0.09 1.48 7.81 -51.93 -0.41 1.07 16 49 H 0.08 1.17 7.95 -51.92 -0.41 0.76 16 50 H 0.15 1.69 7.77 -52.49 -0.41 1.28 16 51 H 0.40 1.46 9.06 45.56 0.41 1.87 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -35.73 404.01 -8.74 -44.47 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.17 Total: 5.55 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.57 Total: -0.63 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.20 Total: -59.37 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.17 Total: -13.74 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.73 -8.74 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279162889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.792 kcal (2) G-P(sol) polarization free energy of solvation -35.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds