Wall clock time and date at job start Wed Apr 1 2020 04:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46989 * 2 1 4 4 C 1.50700 * 109.46775 * 120.00125 * 2 1 3 5 5 O 1.21277 * 120.00541 * 357.89914 * 4 2 1 6 6 N 1.34778 * 119.99501 * 178.18071 * 4 2 1 7 7 C 1.46929 * 120.63303 * 2.12158 * 6 4 2 8 8 C 1.52753 * 109.00978 * 233.58688 * 7 6 4 9 9 C 1.53038 * 109.38551 * 305.58533 * 8 7 6 10 10 C 1.53045 * 109.53568 * 61.24058 * 9 8 7 11 11 C 1.52995 * 109.52407 * 178.66632 * 10 9 8 12 12 O 1.42898 * 109.47481 * 299.85375 * 11 10 9 13 13 N 1.46500 * 109.49466 * 58.58826 * 10 9 8 14 14 C 1.36938 * 120.00618 * 60.16255 * 13 10 9 15 15 H 1.08005 * 119.99538 * 359.97438 * 14 13 10 16 16 C 1.38807 * 120.00629 * 179.97438 * 14 13 10 17 17 N 1.31627 * 119.99800 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00233 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47382 * 60.00158 * 18 16 14 20 20 H 1.48508 * 109.47256 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47285 * 299.99921 * 18 16 14 22 22 C 1.46930 * 120.62945 * 182.40414 * 6 4 2 23 23 C 1.50701 * 109.46843 * 239.99848 * 2 1 3 24 24 C 1.38676 * 120.41787 * 69.72423 * 23 2 1 25 25 C 1.38628 * 118.42073 * 179.78013 * 24 23 2 26 26 C 1.38227 * 119.15643 * 0.47188 * 25 24 23 27 27 N 1.31851 * 120.76912 * 359.76744 * 26 25 24 28 28 C 1.31886 * 121.72281 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46713 * 295.08749 * 1 2 3 30 30 H 1.08994 * 109.46976 * 55.08186 * 1 2 3 31 31 H 1.09000 * 109.47130 * 175.08219 * 1 2 3 32 32 H 1.09007 * 109.47057 * 184.79947 * 3 2 1 33 33 H 1.09002 * 109.47421 * 304.80007 * 3 2 1 34 34 H 1.08998 * 109.47316 * 64.79865 * 3 2 1 35 35 H 1.09002 * 109.58600 * 353.42278 * 7 6 4 36 36 H 1.09004 * 109.58566 * 113.84012 * 7 6 4 37 37 H 1.08999 * 109.56651 * 185.55202 * 8 7 6 38 38 H 1.09002 * 109.39041 * 65.51647 * 8 7 6 39 39 H 1.08997 * 109.46421 * 301.22314 * 9 8 7 40 40 H 1.08993 * 109.45247 * 181.25133 * 9 8 7 41 41 H 1.09000 * 109.47167 * 59.86099 * 11 10 9 42 42 H 1.09007 * 109.47171 * 179.85796 * 11 10 9 43 43 H 0.96697 * 114.00456 * 180.02562 * 12 11 10 44 44 H 0.97009 * 119.99643 * 240.16243 * 13 10 9 45 45 H 0.96996 * 120.00227 * 180.02562 * 17 16 14 46 46 H 1.08998 * 109.58656 * 246.15392 * 22 6 4 47 47 H 1.09000 * 109.58263 * 6.44054 * 22 6 4 48 48 H 1.08003 * 120.78926 * 0.02562 * 24 23 2 49 49 H 1.07998 * 120.42175 * 180.26156 * 25 24 23 50 50 H 1.08010 * 119.61270 * 179.79100 * 26 25 24 51 51 H 1.08001 * 119.61774 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 1.2450 -1.1379 2.0478 6 7 3.3569 -0.8658 1.4254 7 6 4.3246 -0.3076 0.4710 8 6 5.2702 -1.4172 0.0148 9 6 5.9053 -2.0788 1.2399 10 6 4.8112 -2.7016 2.1101 11 6 5.4491 -3.3917 3.3175 12 8 6.3357 -4.4175 2.8664 13 7 4.0621 -3.6852 1.3242 14 6 4.7074 -4.7663 0.7855 15 1 5.7688 -4.8936 0.9398 16 6 3.9975 -5.6984 0.0413 17 7 2.7039 -5.5435 -0.1463 18 14 4.8780 -7.1726 -0.6940 19 1 5.4929 -7.9752 0.3937 20 1 3.9033 -8.0114 -1.4370 21 1 5.9375 -6.7038 -1.6229 22 6 3.8605 -1.6018 2.5931 23 6 2.0324 -0.7105 -1.2305 24 6 1.8757 -0.1391 -2.4843 25 6 2.3573 -0.8265 -3.5875 26 6 2.9646 -2.0545 -3.4034 27 7 3.0920 -2.5698 -2.1965 28 6 2.6494 -1.9422 -1.1242 29 1 -0.3633 0.4357 0.9307 30 1 -0.3633 0.5882 -0.8426 31 1 -0.3633 -1.0239 -0.0881 32 1 3.1267 1.4437 -0.0860 33 1 1.6082 1.9806 -0.8439 34 1 1.7486 1.9309 0.9298 35 1 3.7952 0.0970 -0.3917 36 1 4.8992 0.4831 0.9534 37 1 6.0517 -0.9942 -0.6163 38 1 4.7090 -2.1612 -0.5505 39 1 6.4463 -1.3296 1.8178 40 1 6.5971 -2.8559 0.9150 41 1 6.0072 -2.6598 3.9013 42 1 4.6689 -3.8328 3.9380 43 1 6.7763 -4.8985 3.5803 44 1 3.1089 -3.5706 1.1853 45 1 2.2078 -6.1951 -0.6660 46 1 4.3965 -0.9189 3.2521 47 1 3.0248 -2.0487 3.1315 48 1 1.3934 0.8206 -2.5981 49 1 2.2563 -0.4095 -4.5786 50 1 3.3395 -2.5980 -4.2582 51 1 2.7713 -2.3960 -0.1518 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281142434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:03 Heat of formation + Delta-G solvation = -0.282658 kcal Electronic energy + Delta-G solvation = -34709.852210 eV Core-core repulsion = 30610.993173 eV Total energy + Delta-G solvation = -4098.859037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.29070 -39.18389 -38.04908 -35.78712 -35.47720 -33.68097 -31.95540 -31.75509 -31.12860 -29.97324 -28.64319 -27.32586 -25.77604 -25.32047 -23.83471 -23.35457 -22.94624 -21.82101 -21.09823 -18.86445 -18.34215 -17.34706 -17.16189 -16.53678 -16.26821 -15.96971 -15.55115 -14.98410 -14.63694 -14.43147 -14.36047 -13.87137 -13.72640 -13.58613 -13.42963 -13.26682 -13.06865 -12.86072 -12.68108 -12.48155 -12.22437 -12.14314 -12.08662 -11.90826 -11.71837 -11.65331 -11.25439 -11.04637 -11.01484 -10.65562 -10.61420 -10.26715 -10.23462 -10.03768 -9.82984 -9.47026 -9.43700 -9.27454 -8.88348 -8.73383 -8.61380 -8.50193 -8.20870 -6.73868 -5.45910 -2.72685 1.44991 1.67580 2.86712 3.23665 3.62520 3.66354 3.67360 4.24119 4.48375 4.58068 4.80925 4.90886 4.96793 5.06322 5.10673 5.14156 5.23168 5.26736 5.39813 5.46776 5.48020 5.54725 5.57879 5.67868 5.71390 5.78885 5.81017 5.81260 5.86018 5.91708 5.96492 6.02293 6.07261 6.12451 6.17547 6.17766 6.25939 6.34816 6.39525 6.43056 6.52657 6.64116 6.80782 6.87438 7.08210 7.16683 7.20584 7.69202 8.22426 8.40408 8.45642 8.61550 8.69169 9.82238 10.30029 10.66386 11.76227 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.006012 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.546801 B = 4656.185877 C = 5975.998525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C -0.150 4.150 4 C 0.526 3.474 5 O -0.534 6.534 6 N -0.596 5.596 7 C 0.094 3.906 8 C -0.150 4.150 9 C -0.113 4.113 10 C 0.188 3.812 11 C 0.077 3.923 12 O -0.537 6.537 13 N -0.702 5.702 14 C -0.216 4.216 15 H 0.089 0.911 16 C -0.007 4.007 17 N -0.926 5.926 18 Si 0.901 3.099 19 H -0.293 1.293 20 H -0.299 1.299 21 H -0.291 1.291 22 C 0.111 3.889 23 C -0.153 4.153 24 C -0.074 4.074 25 C -0.188 4.188 26 C 0.091 3.909 27 N -0.438 5.438 28 C 0.132 3.868 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.112 0.888 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.022 0.978 42 H 0.038 0.962 43 H 0.352 0.648 44 H 0.379 0.621 45 H 0.249 0.751 46 H 0.066 0.934 47 H 0.094 0.906 48 H 0.127 0.873 49 H 0.127 0.873 50 H 0.148 0.852 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 16.642 -0.813 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.036 4.036 3 C -0.207 4.207 4 C 0.314 3.686 5 O -0.410 6.410 6 N -0.329 5.329 7 C -0.028 4.028 8 C -0.187 4.187 9 C -0.153 4.153 10 C 0.094 3.906 11 C -0.004 4.004 12 O -0.340 6.340 13 N -0.344 5.344 14 C -0.347 4.347 15 H 0.106 0.894 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.734 3.266 19 H -0.221 1.221 20 H -0.225 1.225 21 H -0.218 1.218 22 C -0.011 4.011 23 C -0.156 4.156 24 C -0.100 4.100 25 C -0.208 4.208 26 C -0.067 4.067 27 N -0.144 5.144 28 C -0.025 4.025 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.197 0.803 44 H 0.215 0.785 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.112 0.888 48 H 0.145 0.855 49 H 0.145 0.855 50 H 0.165 0.835 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.310 15.660 -0.940 15.743 hybrid contribution 0.029 -0.270 -0.157 0.314 sum 1.339 15.390 -1.097 15.488 Atomic orbital electron populations 1.21666 0.91123 1.03218 1.02010 1.19615 0.97826 0.95581 0.90619 1.22211 1.02392 0.93265 1.02860 1.20284 0.81926 0.79357 0.87083 1.90689 1.54766 1.49659 1.45909 1.47905 1.05235 1.54359 1.25374 1.22160 0.91481 0.96439 0.92764 1.22100 0.98642 0.98691 0.99308 1.21819 0.98558 0.98845 0.96051 1.19962 0.90957 0.88728 0.90936 1.22685 0.91725 0.89308 0.96729 1.86856 1.61274 1.50946 1.34884 1.42433 1.07631 1.24247 1.60040 1.19344 0.93705 0.98178 1.23433 0.89352 1.24605 0.95477 0.98770 1.01408 1.69618 1.05856 1.36931 1.45075 0.86376 0.78138 0.83436 0.78678 1.22059 1.22506 1.21831 1.21763 0.98713 0.93418 0.87249 1.20643 1.02645 0.97944 0.94322 1.21197 0.97672 0.99457 0.91630 1.22011 1.02154 0.97458 0.99157 1.22979 0.95150 0.92652 0.95877 1.68068 1.15537 1.32767 0.98067 1.23695 0.89685 0.89425 0.99695 0.91417 0.92132 0.91598 0.90794 0.91333 0.91672 0.88941 0.92135 0.92635 0.87035 0.94283 0.90579 0.95987 0.94407 0.80320 0.78508 0.94146 0.91577 0.88777 0.85514 0.85524 0.83513 0.80242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 7.70 37.16 0.29 -1.38 16 2 C -0.03 -0.46 0.60 -156.81 -0.09 -0.55 16 3 C -0.15 -1.57 7.76 37.16 0.29 -1.29 16 4 C 0.53 9.20 5.16 -10.98 -0.06 9.14 16 5 O -0.53 -11.06 15.32 5.56 0.09 -10.98 16 6 N -0.60 -9.76 1.95 -173.03 -0.34 -10.09 16 7 C 0.09 1.36 3.97 -3.93 -0.02 1.34 16 8 C -0.15 -2.56 5.50 -26.84 -0.15 -2.71 16 9 C -0.11 -2.00 4.39 -26.69 -0.12 -2.12 16 10 C 0.19 3.55 0.68 -131.70 -0.09 3.46 16 11 C 0.08 1.34 6.08 37.15 0.23 1.57 16 12 O -0.54 -10.08 9.96 -35.23 -0.35 -10.43 16 13 N -0.70 -16.70 3.50 -47.12 -0.16 -16.86 16 14 C -0.22 -5.79 8.29 -15.06 -0.12 -5.91 16 15 H 0.09 2.41 5.31 -52.48 -0.28 2.13 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 18 Si 0.90 23.47 29.55 -169.99 -5.02 18.44 16 19 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 20 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 21 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 22 C 0.11 1.89 5.14 -3.71 -0.02 1.87 16 23 C -0.15 -2.36 2.97 -104.48 -0.31 -2.67 16 24 C -0.07 -0.94 9.15 -39.28 -0.36 -1.30 16 25 C -0.19 -2.42 10.11 -39.44 -0.40 -2.81 16 26 C 0.09 1.47 11.18 -17.55 -0.20 1.27 16 27 N -0.44 -8.96 9.77 -13.25 -0.13 -9.09 16 28 C 0.13 2.58 6.54 -17.55 -0.11 2.47 16 29 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.75 4.95 -51.93 -0.26 0.49 16 33 H 0.07 0.57 7.18 -51.93 -0.37 0.20 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.27 2.99 -51.93 -0.16 1.11 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.11 2.31 4.10 -51.93 -0.21 2.10 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.56 6.84 -51.93 -0.36 1.20 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.35 4.93 9.12 45.56 0.42 5.34 16 44 H 0.38 10.06 5.87 -40.82 -0.24 9.82 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.09 1.78 7.02 -51.93 -0.36 1.41 16 48 H 0.13 1.21 7.19 -52.48 -0.38 0.84 16 49 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 50 H 0.15 2.04 8.06 -52.48 -0.42 1.62 16 51 H 0.18 4.02 2.71 -52.49 -0.14 3.88 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -33.56 374.05 -7.44 -41.00 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -6.54 Total: 19.33 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.34 Total: 0.08 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.09 Total: -63.08 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.27 Total: -21.41 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.56 -7.44 -41.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281142434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.718 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds