Wall clock time and date at job start Wed Apr 1 2020 04:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46989 * 2 1 4 4 C 1.50700 * 109.46775 * 120.00125 * 2 1 3 5 5 O 1.21277 * 120.00541 * 357.89914 * 4 2 1 6 6 N 1.34778 * 119.99501 * 178.18071 * 4 2 1 7 7 C 1.46929 * 120.63303 * 2.12158 * 6 4 2 8 8 C 1.52753 * 109.00978 * 233.58688 * 7 6 4 9 9 C 1.53038 * 109.38551 * 305.58533 * 8 7 6 10 10 C 1.53045 * 109.53568 * 61.24058 * 9 8 7 11 11 C 1.52995 * 109.52407 * 178.66632 * 10 9 8 12 12 O 1.42898 * 109.47481 * 299.85375 * 11 10 9 13 13 N 1.46500 * 109.49466 * 58.58826 * 10 9 8 14 14 C 1.36938 * 120.00618 * 60.16255 * 13 10 9 15 15 H 1.08005 * 119.99538 * 359.97438 * 14 13 10 16 16 C 1.38807 * 120.00629 * 179.97438 * 14 13 10 17 17 N 1.31627 * 119.99800 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00233 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47382 * 60.00158 * 18 16 14 20 20 H 1.48508 * 109.47256 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47285 * 299.99921 * 18 16 14 22 22 C 1.46930 * 120.62945 * 182.40414 * 6 4 2 23 23 C 1.50701 * 109.46843 * 239.99848 * 2 1 3 24 24 C 1.38676 * 120.41787 * 69.72423 * 23 2 1 25 25 C 1.38628 * 118.42073 * 179.78013 * 24 23 2 26 26 C 1.38227 * 119.15643 * 0.47188 * 25 24 23 27 27 N 1.31851 * 120.76912 * 359.76744 * 26 25 24 28 28 C 1.31886 * 121.72281 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46713 * 295.08749 * 1 2 3 30 30 H 1.08994 * 109.46976 * 55.08186 * 1 2 3 31 31 H 1.09000 * 109.47130 * 175.08219 * 1 2 3 32 32 H 1.09007 * 109.47057 * 184.79947 * 3 2 1 33 33 H 1.09002 * 109.47421 * 304.80007 * 3 2 1 34 34 H 1.08998 * 109.47316 * 64.79865 * 3 2 1 35 35 H 1.09002 * 109.58600 * 353.42278 * 7 6 4 36 36 H 1.09004 * 109.58566 * 113.84012 * 7 6 4 37 37 H 1.08999 * 109.56651 * 185.55202 * 8 7 6 38 38 H 1.09002 * 109.39041 * 65.51647 * 8 7 6 39 39 H 1.08997 * 109.46421 * 301.22314 * 9 8 7 40 40 H 1.08993 * 109.45247 * 181.25133 * 9 8 7 41 41 H 1.09000 * 109.47167 * 59.86099 * 11 10 9 42 42 H 1.09007 * 109.47171 * 179.85796 * 11 10 9 43 43 H 0.96697 * 114.00456 * 180.02562 * 12 11 10 44 44 H 0.97009 * 119.99643 * 240.16243 * 13 10 9 45 45 H 0.96996 * 120.00227 * 180.02562 * 17 16 14 46 46 H 1.08998 * 109.58656 * 246.15392 * 22 6 4 47 47 H 1.09000 * 109.58263 * 6.44054 * 22 6 4 48 48 H 1.08003 * 120.78926 * 0.02562 * 24 23 2 49 49 H 1.07998 * 120.42175 * 180.26156 * 25 24 23 50 50 H 1.08010 * 119.61270 * 179.79100 * 26 25 24 51 51 H 1.08001 * 119.61774 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 1.2450 -1.1379 2.0478 6 7 3.3569 -0.8658 1.4254 7 6 4.3246 -0.3076 0.4710 8 6 5.2702 -1.4172 0.0148 9 6 5.9053 -2.0788 1.2399 10 6 4.8112 -2.7016 2.1101 11 6 5.4491 -3.3917 3.3175 12 8 6.3357 -4.4175 2.8664 13 7 4.0621 -3.6852 1.3242 14 6 4.7074 -4.7663 0.7855 15 1 5.7688 -4.8936 0.9398 16 6 3.9975 -5.6984 0.0413 17 7 2.7039 -5.5435 -0.1463 18 14 4.8780 -7.1726 -0.6940 19 1 5.4929 -7.9752 0.3937 20 1 3.9033 -8.0114 -1.4370 21 1 5.9375 -6.7038 -1.6229 22 6 3.8605 -1.6018 2.5931 23 6 2.0324 -0.7105 -1.2305 24 6 1.8757 -0.1391 -2.4843 25 6 2.3573 -0.8265 -3.5875 26 6 2.9646 -2.0545 -3.4034 27 7 3.0920 -2.5698 -2.1965 28 6 2.6494 -1.9422 -1.1242 29 1 -0.3633 0.4357 0.9307 30 1 -0.3633 0.5882 -0.8426 31 1 -0.3633 -1.0239 -0.0881 32 1 3.1267 1.4437 -0.0860 33 1 1.6082 1.9806 -0.8439 34 1 1.7486 1.9309 0.9298 35 1 3.7952 0.0970 -0.3917 36 1 4.8992 0.4831 0.9534 37 1 6.0517 -0.9942 -0.6163 38 1 4.7090 -2.1612 -0.5505 39 1 6.4463 -1.3296 1.8178 40 1 6.5971 -2.8559 0.9150 41 1 6.0072 -2.6598 3.9013 42 1 4.6689 -3.8328 3.9380 43 1 6.7763 -4.8985 3.5803 44 1 3.1089 -3.5706 1.1853 45 1 2.2078 -6.1951 -0.6660 46 1 4.3965 -0.9189 3.2521 47 1 3.0248 -2.0487 3.1315 48 1 1.3934 0.8206 -2.5981 49 1 2.2563 -0.4095 -4.5786 50 1 3.3395 -2.5980 -4.2582 51 1 2.7713 -2.3960 -0.1518 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281142434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:02 Heat of formation + Delta-G solvation = -25.245509 kcal Electronic energy + Delta-G solvation = -34710.934680 eV Core-core repulsion = 30610.993173 eV Total energy + Delta-G solvation = -4099.941507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.51283 -40.44629 -39.47843 -37.18680 -36.67987 -35.39600 -33.63394 -32.97583 -32.51869 -31.11715 -30.45267 -28.30591 -27.05417 -26.63059 -25.57062 -24.78515 -24.18324 -23.13409 -22.33083 -20.22426 -19.71836 -19.11217 -18.37167 -17.87995 -17.78126 -17.24800 -16.79200 -16.57429 -15.94223 -15.79150 -15.73465 -15.53412 -15.00865 -14.96180 -14.82474 -14.71035 -14.43005 -14.10484 -13.84868 -13.67318 -13.52778 -13.43817 -13.28894 -13.12739 -12.99728 -12.82223 -12.76942 -12.64972 -12.57733 -12.28311 -12.09337 -11.91697 -11.69782 -11.57325 -11.45988 -11.23348 -10.74912 -10.61309 -10.51133 -10.42591 -9.94189 -9.66939 -9.50876 -8.73915 -7.64392 -4.87129 0.29217 0.58729 1.47799 1.49810 1.54354 1.57430 2.02519 2.72074 3.05112 3.35296 3.49811 3.52218 3.76440 3.79907 3.91761 3.99072 4.04420 4.11157 4.17137 4.18065 4.23939 4.31136 4.40276 4.41589 4.49200 4.56128 4.61940 4.65610 4.73053 4.76492 4.79376 4.85369 4.87852 4.90417 4.98900 5.02484 5.04884 5.16074 5.20689 5.30149 5.32276 5.36198 5.44177 5.56659 5.62674 5.81119 5.98259 6.02320 6.43182 6.54176 7.14756 7.18240 7.42541 7.62674 8.30946 8.55676 9.57558 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.006012 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.546801 B = 4656.185877 C = 5975.998525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.029 4.029 3 C -0.145 4.145 4 C 0.516 3.484 5 O -0.582 6.582 6 N -0.593 5.593 7 C 0.100 3.900 8 C -0.153 4.153 9 C -0.104 4.104 10 C 0.176 3.824 11 C 0.078 3.922 12 O -0.565 6.565 13 N -0.707 5.707 14 C -0.183 4.183 15 H 0.086 0.914 16 C -0.069 4.069 17 N -0.955 5.955 18 Si 0.947 3.053 19 H -0.290 1.290 20 H -0.311 1.311 21 H -0.292 1.292 22 C 0.115 3.885 23 C -0.149 4.149 24 C -0.062 4.062 25 C -0.166 4.166 26 C 0.066 3.934 27 N -0.493 5.493 28 C 0.102 3.898 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.027 0.973 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.023 0.977 43 H 0.374 0.626 44 H 0.363 0.637 45 H 0.233 0.767 46 H 0.106 0.894 47 H 0.065 0.935 48 H 0.175 0.825 49 H 0.170 0.830 50 H 0.155 0.845 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 21.110 -1.514 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.033 4.033 3 C -0.201 4.201 4 C 0.305 3.695 5 O -0.462 6.462 6 N -0.324 5.324 7 C -0.022 4.022 8 C -0.191 4.191 9 C -0.143 4.143 10 C 0.084 3.916 11 C -0.002 4.002 12 O -0.370 6.370 13 N -0.347 5.347 14 C -0.315 4.315 15 H 0.103 0.897 16 C -0.261 4.261 17 N -0.608 5.608 18 Si 0.781 3.219 19 H -0.217 1.217 20 H -0.238 1.238 21 H -0.219 1.219 22 C -0.009 4.009 23 C -0.152 4.152 24 C -0.088 4.088 25 C -0.186 4.186 26 C -0.091 4.091 27 N -0.201 5.201 28 C -0.055 4.055 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.222 0.778 44 H 0.196 0.804 45 H 0.042 0.958 46 H 0.124 0.876 47 H 0.084 0.916 48 H 0.192 0.808 49 H 0.188 0.812 50 H 0.173 0.827 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.446 20.155 -1.607 20.367 hybrid contribution -0.213 -1.632 0.096 1.649 sum 2.233 18.524 -1.511 18.719 Atomic orbital electron populations 1.21672 0.90927 1.01516 1.03607 1.19698 0.97910 0.97460 0.88204 1.22236 1.02862 0.90288 1.04762 1.21030 0.81897 0.78911 0.87665 1.90657 1.55909 1.51756 1.47839 1.47969 1.05459 1.53703 1.25299 1.22282 0.90815 0.95927 0.93132 1.22065 0.99207 0.98971 0.98864 1.21685 0.97416 0.98715 0.96486 1.20356 0.91525 0.88558 0.91116 1.22599 0.91808 0.89916 0.95902 1.86751 1.61618 1.51776 1.36905 1.42500 1.07005 1.24620 1.60546 1.19487 0.93288 0.97927 1.20799 0.89654 1.25120 0.96073 1.01307 1.03577 1.69792 1.06874 1.37244 1.46845 0.85588 0.76853 0.81457 0.77960 1.21736 1.23827 1.21925 1.21706 0.97560 0.93630 0.87968 1.20687 1.01771 0.96597 0.96106 1.21675 0.96436 1.00751 0.89927 1.22390 0.99378 0.95552 1.01263 1.23288 0.96441 0.94560 0.94816 1.67861 1.17539 1.34987 0.99725 1.23260 0.92501 0.91352 0.98376 0.91463 0.88396 0.95358 0.90157 0.88012 0.91012 0.87865 0.88485 0.91162 0.90567 0.90690 0.93848 0.91624 0.95824 0.77833 0.80399 0.95832 0.87602 0.91624 0.80817 0.81243 0.82736 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 7.70 71.99 0.55 -2.51 16 2 C -0.03 -0.76 0.60 -53.67 -0.03 -0.79 16 3 C -0.14 -2.35 7.76 71.98 0.56 -1.79 16 4 C 0.52 18.00 5.16 87.66 0.45 18.45 16 5 O -0.58 -25.14 15.32 -3.02 -0.05 -25.19 16 6 N -0.59 -18.82 1.95 -819.73 -1.60 -20.42 16 7 C 0.10 2.61 3.97 86.22 0.34 2.96 16 8 C -0.15 -5.06 5.50 30.52 0.17 -4.89 16 9 C -0.10 -3.53 4.39 30.62 0.13 -3.40 16 10 C 0.18 6.61 0.68 3.68 0.00 6.61 16 11 C 0.08 2.65 6.08 71.98 0.44 3.09 16 12 O -0.56 -20.89 9.96 -148.98 -1.48 -22.37 16 13 N -0.71 -35.01 3.50 -302.99 -1.06 -36.07 16 14 C -0.18 -10.19 8.29 84.03 0.70 -9.49 16 15 H 0.09 4.79 5.31 -2.91 -0.02 4.77 16 16 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 17 N -0.96 -60.95 13.06 21.65 0.28 -60.67 16 18 Si 0.95 50.55 29.55 68.60 2.03 52.58 16 19 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 20 H -0.31 -17.05 7.11 99.48 0.71 -16.35 16 21 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 22 C 0.11 3.80 5.14 86.36 0.44 4.24 16 23 C -0.15 -4.35 2.97 -19.77 -0.06 -4.40 16 24 C -0.06 -1.32 9.15 22.47 0.21 -1.12 16 25 C -0.17 -3.69 10.11 22.36 0.23 -3.47 16 26 C 0.07 2.11 11.18 84.69 0.95 3.05 16 27 N -0.49 -20.93 9.77 -195.84 -1.91 -22.84 16 28 C 0.10 4.07 6.54 84.67 0.55 4.63 16 29 H 0.07 1.71 7.93 -2.39 -0.02 1.69 16 30 H 0.10 1.71 8.10 -2.39 -0.02 1.69 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.22 4.95 -2.38 -0.01 1.20 16 33 H 0.10 1.01 7.18 -2.39 -0.02 0.99 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 2.51 2.99 -2.39 -0.01 2.50 16 36 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 3.22 4.10 -2.39 -0.01 3.21 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.04 1.76 6.84 -2.39 -0.02 1.74 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 42 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.37 10.08 9.12 -74.06 -0.68 9.41 16 44 H 0.36 20.50 5.87 -92.70 -0.54 19.95 16 45 H 0.23 15.06 8.31 -92.71 -0.77 14.29 16 46 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 47 H 0.07 2.57 7.02 -2.39 -0.02 2.55 16 48 H 0.17 2.06 7.19 -2.91 -0.02 2.04 16 49 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 50 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 51 H 0.15 6.82 2.71 -2.91 -0.01 6.81 16 Total: -1.00 -82.49 374.05 2.07 -80.42 By element: Atomic # 1 Polarization: 47.34 SS G_CDS: -0.23 Total: 47.10 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.10 Total: 7.47 kcal Atomic # 7 Polarization: -135.72 SS G_CDS: -4.29 Total: -140.01 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -1.53 Total: -47.56 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.03 Total: 52.58 kcal Total: -82.49 2.07 -80.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281142434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.175 kcal (2) G-P(sol) polarization free energy of solvation -82.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds