Wall clock time and date at job start Wed Apr 1 2020 04:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47672 * 2 1 4 4 C 1.50697 * 109.47280 * 180.02562 * 3 2 1 5 5 C 1.38361 * 119.85814 * 89.99908 * 4 3 2 6 6 C 1.37952 * 120.14783 * 179.97438 * 5 4 3 7 7 C 1.39575 * 119.85252 * 0.02592 * 6 5 4 8 8 C 1.47848 * 120.14648 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99779 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00406 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00091 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47109 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.46831 * 64.99646 * 12 11 10 14 14 C 1.52998 * 109.47211 * 185.00004 * 12 11 10 15 15 N 1.46906 * 109.47010 * 305.00036 * 12 11 10 16 16 C 1.46898 * 110.99888 * 155.00014 * 15 12 11 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 12 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00123 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46979 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47480 * 120.00092 * 24 22 20 27 27 H 1.48497 * 109.47080 * 240.00247 * 24 22 20 28 28 C 1.39580 * 119.71389 * 0.25285 * 7 6 5 29 29 C 1.37960 * 119.84964 * 359.46345 * 28 7 6 30 30 H 1.08994 * 109.47576 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47069 * 300.00445 * 1 2 3 32 32 H 1.09001 * 109.47167 * 59.99829 * 1 2 3 33 33 H 1.09006 * 109.47069 * 239.99555 * 2 1 3 34 34 H 1.09001 * 109.47167 * 120.00171 * 2 1 3 35 35 H 1.08997 * 109.47074 * 59.99819 * 3 2 1 36 36 H 1.09001 * 109.46965 * 300.00295 * 3 2 1 37 37 H 1.08004 * 119.92136 * 0.02562 * 5 4 3 38 38 H 1.07994 * 120.07483 * 179.97438 * 6 5 4 39 39 H 0.97004 * 119.99971 * 0.02562 * 10 8 7 40 40 H 1.08993 * 109.47197 * 60.00229 * 11 10 8 41 41 H 1.08997 * 109.47140 * 299.99817 * 11 10 8 42 42 H 1.09001 * 109.47093 * 179.97438 * 14 12 11 43 43 H 1.09002 * 109.47121 * 299.99744 * 14 12 11 44 44 H 1.09002 * 109.46901 * 59.99641 * 14 12 11 45 45 H 1.00902 * 110.99923 * 278.95955 * 15 12 11 46 46 H 1.08995 * 109.47296 * 299.99911 * 16 15 12 47 47 H 1.08997 * 109.47334 * 60.00212 * 16 15 12 48 48 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 49 49 H 0.97010 * 119.99812 * 180.02562 * 23 22 20 50 50 H 1.07992 * 120.07520 * 179.72942 * 28 7 6 51 51 H 1.07994 * 119.92952 * 180.27536 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4423 -0.0006 5 6 4.2354 1.4424 -1.2009 6 6 5.6149 1.4429 -1.2084 7 6 6.3162 1.4427 -0.0017 8 6 7.7947 1.4426 -0.0022 9 8 8.4021 1.4431 -1.0551 10 7 8.4691 1.4429 1.1647 11 6 9.9340 1.4433 1.1641 12 6 10.4446 1.4430 2.6064 13 1 10.1567 0.5113 3.0935 14 6 11.9694 1.5692 2.6077 15 7 9.8588 2.5771 3.3335 16 6 9.8166 2.3113 4.7777 17 6 9.2103 3.4938 5.4885 18 8 8.8494 4.4628 4.8545 19 7 9.0692 3.4746 6.8287 20 6 8.5181 4.5505 7.4755 21 1 8.1967 5.4133 6.9109 22 6 8.3721 4.5305 8.8571 23 7 8.7627 3.4804 9.5439 24 14 7.6206 5.9962 9.7383 25 1 7.2667 7.0424 8.7455 26 1 6.3973 5.5652 10.4614 27 1 8.6010 6.5465 10.7084 28 6 5.6158 1.4366 1.2056 29 6 4.2363 1.4422 1.1992 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.6913 1.4430 -2.1339 38 1 6.1509 1.4425 -2.1459 39 1 7.9844 1.4428 2.0049 40 1 10.2969 2.3333 0.6501 41 1 10.2974 0.5534 0.6502 42 1 12.3331 1.5694 3.6353 43 1 12.4041 0.7277 2.0682 44 1 12.2572 2.5008 2.1205 45 1 10.3603 3.4304 3.1373 46 1 9.2111 1.4248 4.9664 47 1 10.8288 2.1452 5.1463 48 1 9.3581 2.6998 7.3358 49 1 8.6604 3.4663 10.5085 50 1 6.1526 1.4320 2.1427 51 1 3.6931 1.4420 2.1325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317269241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:14 Heat of formation + Delta-G solvation = -69.584995 kcal Electronic energy + Delta-G solvation = -29419.476956 eV Core-core repulsion = 25317.612745 eV Total energy + Delta-G solvation = -4101.864212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.27342 -38.88082 -38.36772 -36.91402 -35.29449 -34.19804 -33.78765 -31.64620 -31.28042 -31.10240 -30.53848 -27.50228 -26.44530 -25.83119 -23.97830 -23.03193 -22.67974 -21.46340 -21.03687 -20.13956 -19.35165 -18.06297 -17.86324 -16.50339 -16.07577 -15.82954 -15.64234 -15.40621 -15.14280 -14.93538 -14.57204 -14.54710 -14.44214 -14.02729 -13.88158 -13.76229 -13.60833 -13.30533 -13.09732 -12.89899 -12.68645 -12.54206 -12.34358 -12.23561 -12.21925 -11.73478 -11.61772 -11.50462 -11.44008 -11.29118 -11.24141 -11.09882 -11.00739 -10.91223 -10.37587 -10.26440 -9.91527 -9.56216 -9.12458 -9.06966 -8.77000 -8.54453 -8.15508 -8.00618 -6.46066 -3.86954 0.74187 1.24955 2.84407 3.13192 3.22313 3.24341 3.31422 3.77871 3.85535 4.02404 4.26190 4.41527 4.53926 4.72907 4.74686 4.76567 4.79453 4.87266 4.97866 5.08929 5.11772 5.14424 5.17986 5.22741 5.23876 5.43292 5.45815 5.47728 5.51191 5.58931 5.63885 5.67008 5.72083 5.78774 5.81743 5.85406 5.88054 5.96378 5.97024 6.02077 6.18285 6.21363 6.25170 6.39790 6.49128 6.75307 7.10177 7.51449 7.55105 7.62114 8.02036 8.27438 8.56388 9.13815 9.49630 10.00724 10.71601 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007315 B = 0.002476 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3826.623277 B =11306.095312 C =14523.435677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.085 4.085 4 C -0.060 4.060 5 C -0.130 4.130 6 C -0.059 4.059 7 C -0.137 4.137 8 C 0.556 3.444 9 O -0.551 6.551 10 N -0.706 5.706 11 C 0.134 3.866 12 C 0.067 3.933 13 H 0.084 0.916 14 C -0.181 4.181 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.439 3.561 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C -0.077 4.077 29 C -0.124 4.124 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.409 0.591 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.354 0.646 46 H 0.085 0.915 47 H 0.045 0.955 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.130 0.870 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 -10.549 -16.764 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.122 4.122 4 C -0.060 4.060 5 C -0.148 4.148 6 C -0.078 4.078 7 C -0.140 4.140 8 C 0.344 3.656 9 O -0.431 6.431 10 N -0.358 5.358 11 C 0.010 3.990 12 C -0.044 4.044 13 H 0.102 0.898 14 C -0.240 4.240 15 N -0.297 5.297 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.095 4.095 29 C -0.142 4.142 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.246 0.754 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.174 0.826 46 H 0.103 0.897 47 H 0.063 0.937 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.148 0.852 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.690 -10.115 -17.805 21.873 hybrid contribution 0.650 0.335 1.678 1.831 sum -7.040 -9.780 -16.126 20.131 Atomic orbital electron populations 1.21790 0.95599 1.01756 1.01925 1.21509 0.95742 0.95872 1.02537 1.20714 0.90609 0.97627 1.03290 1.20116 0.95880 0.96815 0.93178 1.20985 0.93784 1.02272 0.97721 1.21226 0.93776 0.95126 0.97680 1.19952 0.92921 1.06695 0.94451 1.18273 0.87146 0.76357 0.83841 1.90737 1.70007 1.50967 1.31344 1.45726 1.07389 1.73905 1.08753 1.21345 0.79774 1.01995 0.95919 1.21864 0.92765 0.95725 0.94000 0.89769 1.22430 0.96216 1.02707 1.02641 1.60185 1.58161 1.04707 1.06644 1.21723 0.99693 0.98713 0.88208 1.19804 0.85594 0.89122 0.83019 1.90540 1.54508 1.35730 1.65821 1.41877 1.54619 1.18506 1.05016 1.19745 1.36353 0.96877 0.89828 0.87880 1.25260 0.97763 0.98339 0.96576 1.69621 1.47557 1.29064 1.08041 0.85812 0.78512 0.80917 0.79199 1.19201 1.20711 1.20763 1.21404 0.94590 0.96240 0.97295 1.21023 0.93898 1.01362 0.97925 0.92651 0.92566 0.92716 0.91824 0.91672 0.90607 0.90809 0.85616 0.84837 0.75381 0.91408 0.91283 0.91909 0.91822 0.91944 0.82581 0.89672 0.93664 0.77492 0.91907 0.85195 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.52 16 2 C -0.12 -0.80 5.92 -26.74 -0.16 -0.96 16 3 C -0.09 -0.62 5.34 -27.89 -0.15 -0.77 16 4 C -0.06 -0.57 5.14 -104.53 -0.54 -1.10 16 5 C -0.13 -1.26 9.68 -39.64 -0.38 -1.65 16 6 C -0.06 -0.69 9.60 -39.19 -0.38 -1.07 16 7 C -0.14 -1.76 5.87 -104.97 -0.62 -2.38 16 8 C 0.56 8.05 7.77 -12.33 -0.10 7.95 16 9 O -0.55 -9.47 16.35 5.32 0.09 -9.39 16 10 N -0.71 -9.04 5.34 -61.25 -0.33 -9.37 16 11 C 0.13 1.58 5.37 -4.04 -0.02 1.55 16 12 C 0.07 0.73 2.75 -67.71 -0.19 0.55 16 13 H 0.08 0.85 7.80 -51.93 -0.40 0.45 16 14 C -0.18 -1.72 9.16 37.16 0.34 -1.38 16 15 N -0.66 -9.53 5.31 -107.99 -0.57 -10.10 16 16 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 17 C 0.44 9.82 7.82 -10.98 -0.09 9.74 16 18 O -0.58 -15.20 15.78 5.55 0.09 -15.11 16 19 N -0.56 -13.75 5.29 -10.96 -0.06 -13.80 16 20 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 21 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 24 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 C -0.08 -0.89 9.54 -39.18 -0.37 -1.26 16 29 C -0.12 -1.29 9.68 -39.64 -0.38 -1.67 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.13 1.53 7.65 -52.49 -0.40 1.13 16 39 H 0.41 5.03 6.17 -40.82 -0.25 4.77 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 45 H 0.35 5.52 8.17 -39.29 -0.32 5.20 16 46 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 47 H 0.05 0.66 7.44 -51.93 -0.39 0.27 16 48 H 0.39 9.14 7.90 -40.82 -0.32 8.81 16 49 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 50 H 0.13 1.41 6.41 -52.49 -0.34 1.07 16 51 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 424.74 15.07 6.40 6.40 Total: -1.00 -32.31 424.74 -9.84 -42.15 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -8.23 Total: 16.84 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.93 Total: 0.01 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.23 Total: -56.59 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: 0.17 Total: -24.50 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -32.31 -9.84 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317269241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.430 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds