Wall clock time and date at job start Wed Apr 1 2020 04:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47672 * 2 1 4 4 C 1.50697 * 109.47280 * 180.02562 * 3 2 1 5 5 C 1.38361 * 119.85814 * 89.99908 * 4 3 2 6 6 C 1.37952 * 120.14783 * 179.97438 * 5 4 3 7 7 C 1.39575 * 119.85252 * 0.02592 * 6 5 4 8 8 C 1.47848 * 120.14648 * 179.97438 * 7 6 5 9 9 O 1.21554 * 119.99779 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00406 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00091 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47109 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.46831 * 64.99646 * 12 11 10 14 14 C 1.52998 * 109.47211 * 185.00004 * 12 11 10 15 15 N 1.46906 * 109.47010 * 305.00036 * 12 11 10 16 16 C 1.46898 * 110.99888 * 155.00014 * 15 12 11 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 12 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00123 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46979 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47480 * 120.00092 * 24 22 20 27 27 H 1.48497 * 109.47080 * 240.00247 * 24 22 20 28 28 C 1.39580 * 119.71389 * 0.25285 * 7 6 5 29 29 C 1.37960 * 119.84964 * 359.46345 * 28 7 6 30 30 H 1.08994 * 109.47576 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47069 * 300.00445 * 1 2 3 32 32 H 1.09001 * 109.47167 * 59.99829 * 1 2 3 33 33 H 1.09006 * 109.47069 * 239.99555 * 2 1 3 34 34 H 1.09001 * 109.47167 * 120.00171 * 2 1 3 35 35 H 1.08997 * 109.47074 * 59.99819 * 3 2 1 36 36 H 1.09001 * 109.46965 * 300.00295 * 3 2 1 37 37 H 1.08004 * 119.92136 * 0.02562 * 5 4 3 38 38 H 1.07994 * 120.07483 * 179.97438 * 6 5 4 39 39 H 0.97004 * 119.99971 * 0.02562 * 10 8 7 40 40 H 1.08993 * 109.47197 * 60.00229 * 11 10 8 41 41 H 1.08997 * 109.47140 * 299.99817 * 11 10 8 42 42 H 1.09001 * 109.47093 * 179.97438 * 14 12 11 43 43 H 1.09002 * 109.47121 * 299.99744 * 14 12 11 44 44 H 1.09002 * 109.46901 * 59.99641 * 14 12 11 45 45 H 1.00902 * 110.99923 * 278.95955 * 15 12 11 46 46 H 1.08995 * 109.47296 * 299.99911 * 16 15 12 47 47 H 1.08997 * 109.47334 * 60.00212 * 16 15 12 48 48 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 49 49 H 0.97010 * 119.99812 * 180.02562 * 23 22 20 50 50 H 1.07992 * 120.07520 * 179.72942 * 28 7 6 51 51 H 1.07994 * 119.92952 * 180.27536 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4423 -0.0006 5 6 4.2354 1.4424 -1.2009 6 6 5.6149 1.4429 -1.2084 7 6 6.3162 1.4427 -0.0017 8 6 7.7947 1.4426 -0.0022 9 8 8.4021 1.4431 -1.0551 10 7 8.4691 1.4429 1.1647 11 6 9.9340 1.4433 1.1641 12 6 10.4446 1.4430 2.6064 13 1 10.1567 0.5113 3.0935 14 6 11.9694 1.5692 2.6077 15 7 9.8588 2.5771 3.3335 16 6 9.8166 2.3113 4.7777 17 6 9.2103 3.4938 5.4885 18 8 8.8494 4.4628 4.8545 19 7 9.0692 3.4746 6.8287 20 6 8.5181 4.5505 7.4755 21 1 8.1967 5.4133 6.9109 22 6 8.3721 4.5305 8.8571 23 7 8.7627 3.4804 9.5439 24 14 7.6206 5.9962 9.7383 25 1 7.2667 7.0424 8.7455 26 1 6.3973 5.5652 10.4614 27 1 8.6010 6.5465 10.7084 28 6 5.6158 1.4366 1.2056 29 6 4.2363 1.4422 1.1992 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.6913 1.4430 -2.1339 38 1 6.1509 1.4425 -2.1459 39 1 7.9844 1.4428 2.0049 40 1 10.2969 2.3333 0.6501 41 1 10.2974 0.5534 0.6502 42 1 12.3331 1.5694 3.6353 43 1 12.4041 0.7277 2.0682 44 1 12.2572 2.5008 2.1205 45 1 10.3603 3.4304 3.1373 46 1 9.2111 1.4248 4.9664 47 1 10.8288 2.1452 5.1463 48 1 9.3581 2.6998 7.3358 49 1 8.6604 3.4663 10.5085 50 1 6.1526 1.4320 2.1427 51 1 3.6931 1.4420 2.1325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317269241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:13 Heat of formation + Delta-G solvation = -90.863901 kcal Electronic energy + Delta-G solvation = -29420.399679 eV Core-core repulsion = 25317.612745 eV Total energy + Delta-G solvation = -4102.786934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.25845 -40.21688 -39.65176 -38.11972 -35.97024 -35.95203 -35.09676 -33.27137 -32.47198 -31.94992 -31.55957 -28.26264 -27.95880 -26.75108 -25.62975 -23.82942 -23.50489 -22.12542 -22.00600 -21.11191 -21.05677 -19.91170 -18.98240 -17.78067 -17.36870 -16.92862 -16.59892 -16.44786 -16.32466 -16.17038 -15.92424 -15.84924 -15.46576 -15.18541 -15.03054 -14.68099 -14.46942 -14.43567 -14.26004 -13.79126 -13.65471 -13.63094 -13.43934 -13.39036 -13.07574 -13.03611 -12.88360 -12.77825 -12.53774 -12.38559 -12.11722 -12.05504 -12.02839 -11.93253 -11.89596 -11.50110 -11.47609 -11.03472 -10.32941 -10.12729 -9.99615 -9.96355 -9.63969 -9.35034 -8.46012 -5.94011 -0.15637 0.40736 1.36673 1.42473 1.55932 1.83906 2.07873 2.22052 2.29645 2.86382 2.90449 3.21935 3.52377 3.67850 3.78636 3.85663 3.90285 4.00947 4.10240 4.18401 4.25755 4.31649 4.35371 4.42454 4.47436 4.49742 4.54356 4.61578 4.64748 4.74550 4.78318 4.86381 4.88736 4.95825 4.99155 5.03198 5.05479 5.24893 5.25843 5.28090 5.33288 5.39580 5.42440 5.47457 5.48693 5.63213 5.89468 5.93847 6.10453 6.35476 6.56113 6.61779 7.14680 7.19558 7.58851 8.14360 8.71451 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007315 B = 0.002476 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3826.623277 B =11306.095312 C =14523.435677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.083 4.083 4 C -0.055 4.055 5 C -0.127 4.127 6 C -0.070 4.070 7 C -0.159 4.159 8 C 0.552 3.448 9 O -0.587 6.587 10 N -0.701 5.701 11 C 0.134 3.866 12 C 0.077 3.923 13 H 0.101 0.899 14 C -0.176 4.176 15 N -0.675 5.675 16 C 0.066 3.934 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.330 4.330 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.989 3.011 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.083 4.083 29 C -0.132 4.132 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.412 0.588 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.345 0.655 46 H 0.109 0.891 47 H 0.068 0.932 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.132 0.868 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 -11.516 -16.514 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.120 4.120 4 C -0.055 4.055 5 C -0.145 4.145 6 C -0.089 4.089 7 C -0.162 4.162 8 C 0.340 3.660 9 O -0.469 6.469 10 N -0.351 5.351 11 C 0.010 3.990 12 C -0.033 4.033 13 H 0.119 0.881 14 C -0.235 4.235 15 N -0.307 5.307 16 C -0.066 4.066 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.459 4.459 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.813 3.187 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.102 4.102 29 C -0.150 4.150 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.169 0.831 38 H 0.147 0.853 39 H 0.249 0.751 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.164 0.836 46 H 0.127 0.873 47 H 0.086 0.914 48 H 0.230 0.770 49 H 0.086 0.914 50 H 0.150 0.850 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.536 -11.118 -17.530 22.445 hybrid contribution 0.888 0.618 1.536 1.879 sum -7.648 -10.500 -15.994 20.604 Atomic orbital electron populations 1.21779 0.94783 1.02107 1.02269 1.21483 0.96406 0.95272 1.02275 1.20762 0.88812 0.98249 1.04165 1.20424 0.97212 0.95187 0.92712 1.21255 0.93030 1.01177 0.99003 1.21338 0.94773 0.95638 0.97199 1.19959 0.92114 1.08678 0.95467 1.18601 0.87961 0.75754 0.83665 1.90703 1.70823 1.52948 1.32453 1.45756 1.07898 1.73027 1.08464 1.21419 0.79184 1.01871 0.96549 1.21870 0.93662 0.94932 0.92869 0.88063 1.22378 0.94814 1.03372 1.02941 1.60151 1.59152 1.05547 1.05890 1.21579 1.00611 0.96027 0.88423 1.20924 0.83907 0.90204 0.82375 1.90513 1.55886 1.37978 1.66559 1.41936 1.55182 1.18113 1.05892 1.19654 1.38295 0.97422 0.90577 0.90503 1.25979 0.97731 1.00808 0.96692 1.69672 1.47745 1.30169 1.08517 0.84924 0.78157 0.77717 0.77884 1.19920 1.19584 1.19758 1.21477 0.95268 0.96526 0.96932 1.21273 0.93533 1.01115 0.99059 0.92341 0.92509 0.92099 0.91809 0.92274 0.90170 0.89546 0.83128 0.85284 0.75052 0.92795 0.90143 0.91823 0.89914 0.92379 0.83556 0.87279 0.91393 0.76956 0.91364 0.84984 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 3 C -0.08 -1.04 5.34 29.85 0.16 -0.88 16 4 C -0.06 -0.97 5.14 -19.81 -0.10 -1.07 16 5 C -0.13 -2.32 9.68 22.23 0.22 -2.11 16 6 C -0.07 -1.65 9.60 22.52 0.22 -1.44 16 7 C -0.16 -4.15 5.87 -20.09 -0.12 -4.27 16 8 C 0.55 16.34 7.77 86.79 0.67 17.01 16 9 O -0.59 -20.82 16.35 -3.89 -0.06 -20.88 16 10 N -0.70 -17.92 5.34 -465.98 -2.49 -20.41 16 11 C 0.13 3.06 5.37 86.38 0.46 3.52 16 12 C 0.08 1.53 2.75 44.92 0.12 1.66 16 13 H 0.10 1.74 7.80 -2.39 -0.02 1.72 16 14 C -0.18 -2.97 9.16 71.98 0.66 -2.31 16 15 N -0.68 -18.67 5.31 -495.56 -2.63 -21.31 16 16 C 0.07 1.99 5.97 85.56 0.51 2.50 16 17 C 0.44 19.64 7.82 87.66 0.69 20.32 16 18 O -0.62 -33.22 15.78 -3.05 -0.05 -33.27 16 19 N -0.57 -28.20 5.29 -306.99 -1.62 -29.82 16 20 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 21 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 22 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 23 N -0.92 -48.53 13.05 21.66 0.28 -48.24 16 24 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 C -0.08 -1.92 9.54 22.53 0.21 -1.71 16 29 C -0.13 -2.62 9.68 22.23 0.22 -2.41 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 36 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.13 3.06 7.65 -2.91 -0.02 3.04 16 39 H 0.41 10.00 6.17 -92.70 -0.57 9.42 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.09 7.45 -2.39 -0.02 1.07 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 44 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 45 H 0.35 10.68 8.17 -89.69 -0.73 9.95 16 46 H 0.11 2.84 8.05 -2.39 -0.02 2.82 16 47 H 0.07 1.80 7.44 -2.39 -0.02 1.78 16 48 H 0.40 18.43 7.90 -92.71 -0.73 17.70 16 49 H 0.28 13.67 8.31 -92.70 -0.77 12.90 16 50 H 0.13 2.87 6.41 -2.91 -0.02 2.85 16 51 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -70.86 424.74 0.46 -70.40 By element: Atomic # 1 Polarization: 51.06 SS G_CDS: -1.08 Total: 49.98 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 6.09 Total: 9.26 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -6.46 Total: -119.78 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -0.11 Total: -54.15 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -70.86 0.46 -70.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317269241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.468 kcal (2) G-P(sol) polarization free energy of solvation -70.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds