Wall clock time and date at job start Wed Apr 1 2020 04:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46781 * 2 1 4 4 C 1.50698 * 109.46727 * 179.97438 * 3 2 1 5 5 C 1.38024 * 119.51450 * 125.28307 * 4 3 2 6 6 C 1.39928 * 119.13281 * 180.23130 * 5 4 3 7 7 C 1.48162 * 120.89046 * 179.77522 * 6 5 4 8 8 O 1.21516 * 120.00073 * 6.72146 * 7 6 5 9 9 N 1.34780 * 119.99830 * 186.72597 * 7 6 5 10 10 C 1.47017 * 125.64970 * 354.26421 * 9 7 6 11 11 C 1.54316 * 107.27050 * 181.02526 * 10 9 7 12 12 C 1.55150 * 103.10590 * 22.10728 * 11 10 9 13 13 H 1.09003 * 111.00976 * 82.65659 * 12 11 10 14 14 C 1.52999 * 111.00955 * 206.51121 * 12 11 10 15 15 N 1.46501 * 109.47409 * 184.99791 * 14 12 11 16 16 C 1.46494 * 120.00085 * 90.00309 * 15 14 12 17 17 C 1.36940 * 119.99702 * 269.99906 * 15 14 12 18 18 H 1.08004 * 120.00033 * 33.88503 * 17 15 14 19 19 C 1.38810 * 119.99874 * 213.87968 * 17 15 14 20 20 N 1.31618 * 120.00058 * 355.35155 * 19 17 15 21 21 Si 1.86796 * 119.99994 * 175.34768 * 19 17 15 22 22 H 1.48508 * 109.47002 * 60.00368 * 21 19 17 23 23 H 1.48500 * 109.47352 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47452 * 300.00248 * 21 19 17 25 25 C 1.47425 * 125.64701 * 174.22572 * 9 7 6 26 26 C 1.39609 * 118.21611 * 359.49440 * 6 5 4 27 27 C 1.38847 * 118.94930 * 0.25558 * 26 6 5 28 28 O 1.35694 * 119.62384 * 180.02562 * 27 26 6 29 29 N 1.31883 * 119.51306 * 304.99884 * 4 3 2 30 30 H 1.09003 * 109.46884 * 60.00397 * 1 2 3 31 31 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47392 * 300.00020 * 1 2 3 33 33 H 1.08996 * 109.47392 * 239.99980 * 2 1 3 34 34 H 1.09003 * 109.46884 * 119.99603 * 2 1 3 35 35 H 1.08996 * 109.47175 * 59.99846 * 3 2 1 36 36 H 1.08997 * 109.46801 * 299.99764 * 3 2 1 37 37 H 1.07998 * 120.42960 * 359.97438 * 5 4 3 38 38 H 1.09002 * 109.87967 * 61.60733 * 10 9 7 39 39 H 1.09005 * 110.01043 * 300.51645 * 10 9 7 40 40 H 1.09006 * 110.72001 * 140.55681 * 11 10 9 41 41 H 1.09003 * 110.72476 * 263.65169 * 11 10 9 42 42 H 1.09000 * 109.47263 * 305.00176 * 14 12 11 43 43 H 1.09007 * 109.46770 * 64.99363 * 14 12 11 44 44 H 1.08999 * 109.47529 * 94.88480 * 16 15 14 45 45 H 1.09003 * 109.46736 * 214.88864 * 16 15 14 46 46 H 1.09003 * 109.46589 * 334.88209 * 16 15 14 47 47 H 0.96996 * 119.99921 * 180.02562 * 20 19 17 48 48 H 1.08995 * 110.36645 * 274.74893 * 25 9 7 49 49 H 1.09005 * 110.36322 * 36.95525 * 25 9 7 50 50 H 1.07998 * 120.52457 * 180.27705 * 26 6 5 51 51 H 0.96702 * 114.00013 * 89.99605 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2273 2.1362 -0.9797 6 6 5.6266 2.1268 -0.9743 7 6 6.3961 2.8538 -2.0108 8 8 5.8190 3.5677 -2.8070 9 7 7.7362 2.7234 -2.0707 10 6 8.5700 1.9931 -1.1047 11 6 10.0361 2.1369 -1.5643 12 6 10.0041 3.4108 -2.4494 13 1 10.0668 4.3121 -1.8395 14 6 11.1204 3.3803 -3.4952 15 7 11.1345 4.6468 -4.2315 16 6 11.9503 5.7645 -3.7507 17 6 10.3852 4.7856 -5.3693 18 1 9.4340 4.2812 -5.4544 19 6 10.8482 5.5747 -6.4132 20 7 11.9620 6.2622 -6.2746 21 14 9.8905 5.6610 -8.0147 22 1 8.5261 6.1832 -7.7480 23 1 10.5900 6.5661 -8.9616 24 1 9.7937 4.3028 -8.6073 25 6 8.6087 3.2886 -3.1160 26 6 6.2780 1.4188 0.0373 27 6 5.5170 0.7523 0.9884 28 8 6.1361 0.0604 1.9780 29 7 4.1962 0.7844 0.9412 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.6868 2.6757 -1.7433 38 1 8.2870 0.9405 -1.0920 39 1 8.4497 2.4212 -0.1095 40 1 10.6964 2.2784 -0.7086 41 1 10.3443 1.2694 -2.1479 42 1 12.0801 3.2382 -2.9983 43 1 10.9455 2.5582 -4.1894 44 1 12.9143 5.7560 -4.2592 45 1 11.4380 6.7039 -3.9587 46 1 12.1052 5.6653 -2.6763 47 1 12.2853 6.8139 -7.0040 48 1 8.6582 2.6168 -3.9729 49 1 8.2453 4.2690 -3.4241 50 1 7.3568 1.3904 0.0797 51 1 6.3147 0.5836 2.7714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494164178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:32 Heat of formation + Delta-G solvation = -4.143065 kcal Electronic energy + Delta-G solvation = -30555.378035 eV Core-core repulsion = 26456.351599 eV Total energy + Delta-G solvation = -4099.026437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.22302 -39.73815 -37.89010 -37.42410 -35.48859 -35.14165 -33.16753 -32.05605 -30.98097 -30.66158 -29.08203 -27.23396 -26.30238 -25.82727 -24.48516 -23.40130 -22.73520 -21.60069 -21.27597 -20.01986 -19.69690 -18.70391 -17.42698 -16.95056 -16.57635 -16.22077 -16.02329 -15.71761 -15.24556 -14.98938 -14.92981 -14.58454 -14.28320 -13.98330 -13.72998 -13.47929 -13.14398 -13.10188 -12.99914 -12.66774 -12.56569 -12.39739 -12.29790 -12.08112 -11.79419 -11.56578 -11.48732 -11.35765 -11.17516 -11.00610 -10.79560 -10.68077 -10.48561 -10.43246 -10.30932 -10.15208 -10.10390 -9.93710 -9.82002 -9.56769 -9.13939 -8.60097 -8.47190 -6.60740 -5.75160 -3.29918 0.43551 0.64266 2.67229 2.86494 3.16860 3.40624 3.44873 3.47278 3.49669 4.06708 4.16116 4.48700 4.53166 4.61141 4.70334 4.73706 4.74608 4.82334 4.88250 4.99697 5.07529 5.19865 5.27842 5.31246 5.40142 5.42123 5.44242 5.46475 5.55161 5.64792 5.73048 5.75449 5.86696 5.90478 5.92106 6.01266 6.01833 6.09270 6.14658 6.30416 6.41828 6.46407 6.60021 6.77800 6.88880 7.10920 7.39622 7.47933 7.55860 7.78118 7.83417 8.06019 8.46645 9.26544 9.85376 10.39656 11.29275 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.002352 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.067295 B =11899.713779 C =13416.742002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.069 4.069 4 C 0.150 3.850 5 C -0.125 4.125 6 C -0.059 4.059 7 C 0.566 3.434 8 O -0.525 6.525 9 N -0.607 5.607 10 C 0.089 3.911 11 C -0.131 4.131 12 C -0.116 4.116 13 H 0.078 0.922 14 C 0.163 3.837 15 N -0.602 5.602 16 C 0.162 3.838 17 C -0.262 4.262 18 H 0.065 0.935 19 C 0.014 3.986 20 N -0.903 5.903 21 Si 0.898 3.102 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.120 3.880 26 C -0.196 4.196 27 C 0.310 3.690 28 O -0.479 6.479 29 N -0.488 5.488 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.151 0.849 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.031 0.969 45 H 0.039 0.961 46 H -0.007 1.007 47 H 0.254 0.746 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.176 0.824 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.564 -12.099 17.974 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.107 4.107 4 C 0.012 3.988 5 C -0.146 4.146 6 C -0.070 4.070 7 C 0.354 3.646 8 O -0.401 6.401 9 N -0.340 5.340 10 C -0.034 4.034 11 C -0.170 4.170 12 C -0.139 4.139 13 H 0.096 0.904 14 C 0.034 3.966 15 N -0.324 5.324 16 C 0.018 3.982 17 C -0.392 4.392 18 H 0.083 0.917 19 C -0.185 4.185 20 N -0.547 5.547 21 Si 0.727 3.273 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.208 1.208 25 C -0.001 4.001 26 C -0.216 4.216 27 C 0.131 3.869 28 O -0.286 6.286 29 N -0.208 5.208 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.169 0.831 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.012 0.988 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.106 0.894 50 H 0.193 0.807 51 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -14.257 -12.465 17.655 25.891 hybrid contribution 0.093 0.853 -1.047 1.354 sum -14.164 -11.612 16.608 24.724 Atomic orbital electron populations 1.21783 0.95487 1.01824 1.01872 1.21449 0.95670 0.95416 1.02968 1.20643 0.87578 0.98787 1.03709 1.20958 0.96674 0.91765 0.89376 1.22155 0.93231 0.99546 0.99676 1.20301 0.94222 0.97206 0.95278 1.17754 0.80877 0.81780 0.84212 1.90817 1.68750 1.38685 1.41885 1.48556 1.05157 1.52626 1.27700 1.22518 0.92038 0.96249 0.92556 1.22758 0.93736 0.99936 1.00532 1.23279 0.96158 0.96449 0.97982 0.90407 1.20676 0.93682 0.90090 0.92126 1.43791 1.53477 1.07817 1.27321 1.20843 0.95695 0.90537 0.91146 1.19053 0.99263 1.29171 0.91685 0.91691 1.25346 0.96044 0.99491 0.97649 1.70009 1.22216 1.30751 1.31682 0.86446 0.79348 0.77603 0.83860 1.20788 1.21616 1.20798 1.22492 0.88528 0.99919 0.89116 1.23643 1.04547 0.97402 0.96046 1.18995 0.86680 0.90907 0.90361 1.84806 1.77017 1.39377 1.27416 1.66739 1.10122 1.18134 1.25832 0.92632 0.92600 0.92610 0.92087 0.90818 0.89617 0.89717 0.83121 0.90714 0.90858 0.90095 0.90265 0.93961 0.93102 0.95091 0.94217 0.98842 0.93619 0.91035 0.89361 0.80700 0.74178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.91 5.79 -26.73 -0.15 -1.06 16 3 C -0.07 -0.55 5.61 -27.88 -0.16 -0.70 16 4 C 0.15 1.59 6.17 -82.65 -0.51 1.08 16 5 C -0.13 -1.47 9.27 -39.03 -0.36 -1.84 16 6 C -0.06 -0.76 5.90 -104.68 -0.62 -1.38 16 7 C 0.57 8.99 7.83 -12.18 -0.10 8.90 16 8 O -0.52 -10.28 16.69 5.35 0.09 -10.19 16 9 N -0.61 -8.94 3.33 -171.70 -0.57 -9.51 16 10 C 0.09 0.94 4.88 -3.07 -0.01 0.93 16 11 C -0.13 -1.44 6.41 -24.90 -0.16 -1.60 16 12 C -0.12 -1.81 3.27 -88.36 -0.29 -2.10 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.16 3.05 5.17 -4.04 -0.02 3.03 16 15 N -0.60 -14.46 2.90 -181.12 -0.52 -14.98 16 16 C 0.16 3.89 8.97 59.84 0.54 4.43 16 17 C -0.26 -7.00 9.15 -15.06 -0.14 -7.14 16 18 H 0.07 1.71 6.86 -52.48 -0.36 1.35 16 19 C 0.01 0.39 5.39 -17.43 -0.09 0.30 16 20 N -0.90 -26.06 10.63 55.49 0.59 -25.47 16 21 Si 0.90 21.93 29.56 -169.99 -5.02 16.91 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.12 2.07 5.17 -2.41 -0.01 2.06 16 26 C -0.20 -2.08 8.63 -38.84 -0.34 -2.42 16 27 C 0.31 3.30 7.74 -17.17 -0.13 3.17 16 28 O -0.48 -4.13 13.56 -18.78 -0.25 -4.38 16 29 N -0.49 -5.57 9.87 -9.59 -0.09 -5.67 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 37 H 0.15 1.70 7.64 -52.49 -0.40 1.30 16 38 H 0.07 0.69 6.75 -51.93 -0.35 0.34 16 39 H 0.07 0.65 6.77 -51.93 -0.35 0.30 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 42 H 0.04 0.73 8.07 -51.93 -0.42 0.32 16 43 H 0.05 0.96 7.87 -51.92 -0.41 0.56 16 44 H 0.03 0.80 7.25 -51.93 -0.38 0.43 16 45 H 0.04 1.03 7.59 -51.93 -0.39 0.64 16 46 H -0.01 -0.15 8.03 -51.93 -0.42 -0.56 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.07 1.29 7.85 -51.93 -0.41 0.88 16 49 H 0.09 1.83 7.91 -51.93 -0.41 1.41 16 50 H 0.18 1.55 2.94 -52.91 -0.16 1.39 16 51 H 0.40 1.43 9.06 45.56 0.41 1.84 16 LS Contribution 406.84 15.07 6.13 6.13 Total: -1.00 -33.55 406.84 -9.22 -42.77 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.37 Total: -0.68 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.19 Total: 5.08 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.60 Total: -55.64 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.17 Total: -14.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.55 -9.22 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494164178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.629 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds