Wall clock time and date at job start Wed Apr 1 2020 04:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 C 1.50701 * 109.47008 * 240.00237 * 2 1 3 5 5 C 1.38355 * 119.46020 * 84.99730 * 4 2 1 6 6 C 1.38363 * 119.29737 * 179.97438 * 5 4 2 7 7 C 1.40023 * 118.29293 * 0.02562 * 6 5 4 8 8 C 1.47838 * 120.55846 * 180.02562 * 7 6 5 9 9 O 1.21550 * 119.99968 * 310.20928 * 8 7 6 10 10 N 1.34773 * 119.99814 * 130.21081 * 8 7 6 11 11 C 1.46923 * 120.63200 * 3.50653 * 10 8 7 12 12 C 1.52769 * 109.00616 * 233.57983 * 11 10 8 13 13 C 1.53039 * 109.38404 * 305.58685 * 12 11 10 14 14 O 1.42897 * 109.44876 * 301.22610 * 13 12 11 15 15 C 1.53003 * 109.46058 * 181.25747 * 13 12 11 16 16 N 1.46501 * 109.46750 * 59.93125 * 15 13 12 17 17 C 1.36936 * 119.99678 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00539 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00071 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99630 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00184 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47176 * 59.99669 * 21 19 17 23 23 H 1.48504 * 109.47131 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46938 * 299.99571 * 21 19 17 25 25 C 1.53047 * 109.53744 * 61.24082 * 13 12 11 26 26 C 1.46931 * 120.62961 * 183.77865 * 10 8 7 27 27 C 1.39525 * 118.87836 * 359.97438 * 7 6 5 28 28 N 1.31695 * 120.56780 * 359.74697 * 27 7 6 29 29 H 1.09002 * 109.47248 * 60.00074 * 1 2 3 30 30 H 1.09000 * 109.47079 * 300.00413 * 1 2 3 31 31 H 1.09002 * 109.47021 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46959 * 120.00153 * 2 1 3 33 33 H 1.09001 * 109.46967 * 59.99972 * 3 2 1 34 34 H 1.08996 * 109.47343 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46992 * 300.00082 * 3 2 1 36 36 H 1.07991 * 120.34923 * 359.96077 * 5 4 2 37 37 H 1.08002 * 120.84570 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.58715 * 353.41387 * 11 10 8 39 39 H 1.08997 * 109.58798 * 113.84571 * 11 10 8 40 40 H 1.09004 * 109.56515 * 185.54979 * 12 11 10 41 41 H 1.09000 * 109.35676 * 65.49990 * 12 11 10 42 42 H 0.96703 * 114.00036 * 300.05949 * 14 13 12 43 43 H 1.08997 * 109.46968 * 179.97438 * 15 13 12 44 44 H 1.08999 * 109.47120 * 299.93478 * 15 13 12 45 45 H 0.96999 * 120.00216 * 0.02562 * 16 15 13 46 46 H 0.96996 * 119.99541 * 180.02562 * 20 19 17 47 47 H 1.08994 * 109.49645 * 178.68255 * 25 13 12 48 48 H 1.08996 * 109.49565 * 58.58010 * 25 13 12 49 49 H 1.08997 * 109.58821 * 246.15760 * 26 10 8 50 50 H 1.09000 * 109.58382 * 6.58765 * 26 10 8 51 51 H 1.07995 * 119.71273 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.1601 -0.0093 -2.4164 6 6 2.6221 -0.6647 -3.5440 7 6 2.9437 -2.0233 -3.4369 8 6 3.4422 -2.7724 -4.6099 9 8 2.8464 -2.7121 -5.6677 10 7 4.5573 -3.5222 -4.5064 11 6 5.2453 -3.6666 -3.2163 12 6 6.7148 -3.2871 -3.3908 13 6 7.3225 -4.1170 -4.5239 14 8 7.1971 -5.5068 -4.2159 15 6 8.8024 -3.7609 -4.6794 16 7 9.5080 -4.0490 -3.4283 17 6 10.8526 -3.8089 -3.3297 18 1 11.3929 -3.4076 -4.1743 19 6 11.5214 -4.0824 -2.1444 20 7 10.8632 -4.5730 -1.1155 21 14 13.3553 -3.7542 -2.0096 22 1 13.6188 -2.3120 -2.2457 23 1 13.8264 -4.1272 -0.6516 24 1 14.0786 -4.5622 -3.0242 25 6 6.5856 -3.8159 -5.8310 26 6 5.1116 -4.2059 -5.6829 27 6 2.7866 -2.6578 -2.2043 28 7 2.3482 -1.9892 -1.1578 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.9018 1.0383 -2.4616 37 1 2.7311 -0.1419 -4.4827 38 1 4.7841 -3.0077 -2.4805 39 1 5.1755 -4.7006 -2.8786 40 1 7.2552 -3.4845 -2.4649 41 1 6.7876 -2.2276 -3.6363 42 1 7.6411 -5.7701 -3.3982 43 1 9.2355 -4.3522 -5.4861 44 1 8.8982 -2.7010 -4.9148 45 1 9.0230 -4.4105 -2.6700 46 1 11.3304 -4.7637 -0.2872 47 1 7.0341 -4.3896 -6.6420 48 1 6.6597 -2.7514 -6.0534 49 1 5.0306 -5.2848 -5.5505 50 1 4.5621 -3.9028 -6.5742 51 1 3.0310 -3.7052 -2.1064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502872890.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:03 Heat of formation + Delta-G solvation = -62.135781 kcal Electronic energy + Delta-G solvation = -31153.668759 eV Core-core repulsion = 27052.127569 eV Total energy + Delta-G solvation = -4101.541190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.11034 -40.92883 -39.66508 -36.92864 -36.54755 -35.77298 -33.72687 -33.51583 -32.84289 -31.90509 -31.12989 -28.35933 -28.05251 -26.27556 -25.21523 -24.95475 -24.18605 -23.38807 -21.91381 -21.37528 -20.43964 -19.47221 -18.79515 -17.83282 -17.48504 -17.26939 -16.94176 -16.73739 -16.28562 -15.88592 -15.84575 -15.61018 -15.36066 -15.07961 -14.95625 -14.83726 -14.58742 -14.39251 -14.28906 -14.15512 -13.75891 -13.69539 -13.50949 -13.20004 -13.00741 -12.89717 -12.79647 -12.72908 -12.34712 -12.27305 -12.20561 -12.14444 -12.07694 -11.98157 -11.88484 -11.36518 -11.28930 -10.99568 -10.97032 -10.78922 -10.47844 -10.00780 -9.74151 -9.03015 -7.97273 -5.25574 -0.32947 0.14694 1.46080 1.47836 1.49281 1.55499 1.83099 2.54348 2.62626 3.04037 3.23201 3.34612 3.40230 3.58410 3.61697 3.69507 3.74775 3.85930 3.94747 4.00097 4.13138 4.16051 4.21454 4.25963 4.27412 4.37484 4.52185 4.53468 4.65134 4.67902 4.72085 4.79040 4.82045 4.84850 4.88764 4.89134 4.95831 4.99333 5.03256 5.05234 5.10890 5.21913 5.28853 5.36682 5.41343 5.41915 5.48542 5.53976 6.20848 6.24432 6.72325 6.81155 6.92127 7.32646 8.03311 8.28526 9.25110 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.002685 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.627857 B =10424.453417 C =12249.502845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C -0.146 4.146 4 C 0.145 3.855 5 C -0.166 4.166 6 C -0.030 4.030 7 C -0.198 4.198 8 C 0.567 3.433 9 O -0.571 6.571 10 N -0.594 5.594 11 C 0.112 3.888 12 C -0.149 4.149 13 C 0.138 3.862 14 O -0.560 6.560 15 C 0.129 3.871 16 N -0.736 5.736 17 C -0.249 4.249 18 H 0.071 0.929 19 C -0.067 4.067 20 N -0.963 5.963 21 Si 0.969 3.031 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.280 1.280 25 C -0.111 4.111 26 C 0.122 3.878 27 C 0.131 3.869 28 N -0.502 5.502 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.172 0.828 37 H 0.151 0.849 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.382 0.618 43 H 0.022 0.978 44 H 0.026 0.974 45 H 0.377 0.623 46 H 0.252 0.748 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.477 10.008 -1.015 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C -0.204 4.204 4 C 0.008 3.992 5 C -0.185 4.185 6 C -0.057 4.057 7 C -0.203 4.203 8 C 0.356 3.644 9 O -0.452 6.452 10 N -0.325 5.325 11 C -0.011 4.011 12 C -0.187 4.187 13 C 0.097 3.903 14 O -0.368 6.368 15 C 0.002 3.998 16 N -0.380 5.380 17 C -0.380 4.380 18 H 0.089 0.911 19 C -0.260 4.260 20 N -0.613 5.613 21 Si 0.798 3.202 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.207 1.207 25 C -0.150 4.150 26 C 0.001 3.999 27 C -0.027 4.027 28 N -0.211 5.211 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.190 0.810 37 H 0.169 0.831 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.231 0.769 43 H 0.040 0.960 44 H 0.044 0.956 45 H 0.211 0.789 46 H 0.061 0.939 47 H 0.111 0.889 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.109 0.891 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.038 9.639 -1.395 24.094 hybrid contribution 1.786 0.085 0.137 1.793 sum -20.253 9.724 -1.258 22.501 Atomic orbital electron populations 1.21786 0.92377 1.01926 1.03416 1.20200 0.97041 0.96234 0.93453 1.21942 1.01068 0.93555 1.03806 1.21952 0.91740 0.89430 0.96092 1.22233 1.01206 1.03108 0.91970 1.21822 0.91797 0.92039 0.99993 1.20856 1.07339 0.96844 0.95248 1.18343 0.80210 0.78339 0.87522 1.90752 1.58246 1.65451 1.30723 1.48089 1.25318 1.47893 1.11184 1.21909 0.91598 1.03200 0.84357 1.22342 0.95757 1.00659 0.99986 1.21226 0.92576 0.81537 0.94937 1.86373 1.78287 1.24201 1.47895 1.21436 0.91851 0.97616 0.88936 1.42373 1.06082 1.77873 1.11722 1.19500 0.86241 1.34875 0.97417 0.91136 1.25460 1.02040 1.02399 0.96082 1.69753 1.36512 1.51527 1.03473 0.85286 0.80628 0.77910 0.76358 1.20621 1.22044 1.20665 1.21836 0.94485 1.02639 0.95995 1.21549 0.92921 0.97348 0.88115 1.23127 0.92550 1.00571 0.86424 1.67584 1.12416 1.09660 1.31422 0.91744 0.90031 0.93598 0.89797 0.90258 0.92996 0.90763 0.81024 0.83149 0.88726 0.89392 0.90775 0.91236 0.76900 0.95986 0.95645 0.78946 0.93869 0.88937 0.89855 0.90140 0.89100 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.18 71.98 0.66 -0.86 16 2 C -0.05 -0.68 3.23 -11.54 -0.04 -0.72 16 3 C -0.15 -1.41 8.62 71.98 0.62 -0.79 16 4 C 0.15 2.70 5.79 42.57 0.25 2.94 16 5 C -0.17 -2.67 9.16 22.33 0.20 -2.46 16 6 C -0.03 -0.60 9.89 22.73 0.22 -0.37 16 7 C -0.20 -4.60 5.04 -19.99 -0.10 -4.70 16 8 C 0.57 15.28 7.27 86.78 0.63 15.92 16 9 O -0.57 -18.70 16.47 -3.87 -0.06 -18.76 16 10 N -0.59 -14.81 2.98 -823.15 -2.45 -17.26 16 11 C 0.11 2.66 5.09 86.22 0.44 3.10 16 12 C -0.15 -4.25 4.91 30.53 0.15 -4.10 16 13 C 0.14 4.16 0.71 -10.76 -0.01 4.15 16 14 O -0.56 -17.48 11.70 -148.98 -1.74 -19.22 16 15 C 0.13 4.89 5.40 86.38 0.47 5.36 16 16 N -0.74 -34.75 5.07 -343.45 -1.74 -36.49 16 17 C -0.25 -13.38 9.99 84.03 0.84 -12.54 16 18 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 19 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 20 N -0.96 -55.96 13.06 21.65 0.28 -55.68 16 21 Si 0.97 44.92 29.55 68.60 2.03 46.95 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 C -0.11 -2.81 5.11 30.67 0.16 -2.66 16 26 C 0.12 3.02 6.19 86.36 0.53 3.55 16 27 C 0.13 2.93 8.54 85.02 0.73 3.65 16 28 N -0.50 -11.43 10.25 -182.82 -1.87 -13.30 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.51 6.48 -2.39 -0.02 0.49 16 36 H 0.17 1.65 6.29 -2.92 -0.02 1.63 16 37 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.09 2.12 4.52 -2.39 -0.01 2.11 16 39 H 0.09 2.00 7.81 -2.39 -0.02 1.98 16 40 H 0.07 2.43 6.82 -2.39 -0.02 2.42 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.38 12.24 7.85 -74.06 -0.58 11.66 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.38 18.20 5.58 -92.71 -0.52 17.69 16 46 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 47 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 48 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.08 1.99 7.81 -2.39 -0.02 1.97 16 50 H 0.09 2.27 7.02 -2.39 -0.02 2.25 16 51 H 0.17 3.34 7.00 -2.91 -0.02 3.32 16 Total: -1.00 -67.22 400.96 0.51 -66.71 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -0.14 Total: 40.81 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.22 Total: 6.24 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -5.78 Total: -122.73 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.81 Total: -37.98 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.22 0.51 -66.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502872890.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.575 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds