Wall clock time and date at job start Wed Apr 1 2020 04:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46505 * 120.00064 * 2 1 4 4 C 1.53000 * 109.47021 * 269.99971 * 3 2 1 5 5 N 1.46902 * 109.46999 * 179.97438 * 4 3 2 6 6 C 1.46899 * 110.99822 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47153 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99573 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00091 * 180.02562 * 7 6 5 10 10 C 1.37093 * 119.99868 * 180.02562 * 9 7 6 11 11 H 1.08007 * 120.00090 * 359.97438 * 10 9 7 12 12 C 1.38949 * 119.99898 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99776 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00001 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47084 * 90.00356 * 14 12 10 16 16 H 1.48501 * 109.47163 * 210.00034 * 14 12 10 17 17 H 1.48499 * 109.46941 * 329.99863 * 14 12 10 18 18 C 1.34781 * 120.00162 * 180.02562 * 2 1 3 19 19 O 1.21279 * 119.99918 * 174.78508 * 18 2 1 20 20 C 1.50699 * 119.99786 * 354.78808 * 18 2 1 21 21 C 1.53005 * 109.46739 * 306.27731 * 20 18 2 22 22 C 1.52997 * 109.47090 * 186.27814 * 20 18 2 23 23 C 1.50702 * 109.47461 * 66.27578 * 20 18 2 24 24 C 1.38234 * 120.00224 * 187.48166 * 23 20 18 25 25 C 1.38234 * 120.00203 * 179.97438 * 24 23 20 26 26 C 1.38230 * 119.99597 * 359.97438 * 25 24 23 27 27 C 1.38241 * 120.00557 * 0.27224 * 26 25 24 28 28 C 1.38232 * 119.99370 * 359.51964 * 27 26 25 29 29 H 1.09000 * 109.47206 * 272.92588 * 1 2 3 30 30 H 1.09002 * 109.47588 * 32.92250 * 1 2 3 31 31 H 1.08996 * 109.47275 * 152.92510 * 1 2 3 32 32 H 1.08992 * 109.47004 * 30.00377 * 3 2 1 33 33 H 1.08994 * 109.47086 * 150.00500 * 3 2 1 34 34 H 1.09001 * 109.47362 * 299.99905 * 4 3 2 35 35 H 1.09000 * 109.47155 * 60.00124 * 4 3 2 36 36 H 1.00905 * 110.99798 * 56.05279 * 5 4 3 37 37 H 1.09001 * 109.47187 * 299.99835 * 6 5 4 38 38 H 1.08999 * 109.47588 * 60.00218 * 6 5 4 39 39 H 0.96999 * 119.99882 * 359.97438 * 9 7 6 40 40 H 0.97002 * 119.99920 * 180.02562 * 13 12 10 41 41 H 1.09002 * 109.47026 * 188.74491 * 21 20 18 42 42 H 1.08997 * 109.46989 * 308.74275 * 21 20 18 43 43 H 1.08995 * 109.47137 * 68.74738 * 21 20 18 44 44 H 1.08994 * 109.47370 * 299.99689 * 22 20 18 45 45 H 1.08997 * 109.47161 * 59.99879 * 22 20 18 46 46 H 1.09005 * 109.47041 * 179.97438 * 22 20 18 47 47 H 1.07999 * 119.99579 * 359.97398 * 24 23 20 48 48 H 1.07991 * 120.00044 * 179.97438 * 25 24 23 49 49 H 1.08003 * 120.00223 * 180.02562 * 26 25 24 50 50 H 1.08000 * 120.00259 * 179.72279 * 27 26 25 51 51 H 1.08006 * 120.00003 * 180.27343 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1864 2.9829 -1.4425 6 6 3.4491 3.4391 -2.8139 7 6 4.2024 4.7438 -2.7738 8 8 4.4915 5.2445 -1.7075 9 7 4.5539 5.3546 -3.9226 10 6 5.2396 6.5412 -3.8860 11 1 5.4978 6.9867 -2.9366 12 6 5.6015 7.1712 -5.0704 13 7 6.2583 8.3089 -5.0353 14 14 5.1543 6.4011 -6.7125 15 1 3.8234 6.8971 -7.1458 16 1 6.1743 6.7705 -7.7266 17 1 5.1099 4.9236 -6.5705 18 6 2.1389 -1.1672 -0.0005 19 8 3.3479 -1.1693 -0.0960 20 6 1.3900 -2.4697 0.1175 21 6 0.4905 -2.4304 1.3545 22 6 2.3882 -3.6217 0.2490 23 6 0.5440 -2.6760 -1.1125 24 6 -0.3524 -3.7269 -1.1666 25 6 -1.1288 -3.9158 -2.2946 26 6 -1.0091 -3.0535 -3.3682 27 6 -0.1091 -2.0055 -3.3163 28 6 0.6642 -1.8141 -2.1866 29 1 -0.3633 0.0525 1.0263 30 1 -0.3634 0.8626 -0.5585 31 1 -0.3633 -0.9150 -0.4677 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5137 34 1 3.0415 0.9508 -1.9564 35 1 1.5000 1.8408 -1.9563 36 1 4.0440 2.9057 -0.9163 37 1 4.0453 2.6918 -3.3375 38 1 2.5035 3.5812 -3.3371 39 1 4.3223 4.9543 -4.7753 40 1 6.5107 8.7489 -5.8621 41 1 0.0687 -3.4203 1.5286 42 1 1.0779 -2.1281 2.2214 43 1 -0.3161 -1.7149 1.1947 44 1 3.0290 -3.6497 -0.6322 45 1 3.0000 -3.4725 1.1386 46 1 1.8465 -4.5637 0.3348 47 1 -0.4461 -4.4003 -0.3275 48 1 -1.8287 -4.7371 -2.3369 49 1 -1.6160 -3.2008 -4.2494 50 1 -0.0124 -1.3345 -4.1570 51 1 1.3643 -0.9928 -2.1442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567603077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:56 Heat of formation + Delta-G solvation = -50.535549 kcal Electronic energy + Delta-G solvation = -30630.412379 eV Core-core repulsion = 26529.374213 eV Total energy + Delta-G solvation = -4101.038166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.16868 -40.35965 -39.73763 -37.65676 -36.53235 -36.13942 -35.63352 -33.77917 -31.93130 -31.07824 -30.71834 -28.62323 -27.78132 -27.53995 -25.86618 -24.60223 -23.61741 -23.05227 -21.92910 -21.33138 -20.35312 -19.84125 -18.57826 -17.88133 -17.61069 -17.16385 -17.15495 -16.70382 -16.27333 -16.00730 -15.88418 -15.58456 -15.27737 -15.18713 -15.00782 -14.72901 -14.62411 -14.49828 -14.20638 -14.13274 -13.90995 -13.76472 -13.54836 -13.28380 -13.18288 -13.09087 -12.93192 -12.88136 -12.81048 -12.71696 -12.43874 -12.12729 -12.02968 -12.00083 -11.96958 -11.62451 -11.54261 -10.76766 -10.51859 -10.27882 -9.81833 -9.75707 -9.56775 -9.47915 -8.43538 -6.04757 0.39463 0.49422 1.28583 1.33650 1.42726 1.49458 1.85364 1.90780 2.21003 2.72217 2.85032 3.11990 3.28816 3.44625 3.54680 3.89147 3.97531 4.02112 4.06280 4.11485 4.13410 4.18988 4.28274 4.32997 4.36808 4.43629 4.50173 4.59067 4.60451 4.64899 4.69497 4.74183 4.80988 4.83070 4.88820 4.92322 4.95156 5.08373 5.15787 5.19997 5.28391 5.40080 5.50357 5.59180 5.62042 5.65347 5.82678 5.95630 6.08836 6.21153 6.30947 6.56355 6.84550 7.06825 7.35729 7.91630 8.74031 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.002109 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.665800 B =13274.838992 C =14346.984564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.604 5.604 3 C 0.121 3.879 4 C 0.057 3.943 5 N -0.678 5.678 6 C 0.063 3.937 7 C 0.449 3.551 8 O -0.613 6.613 9 N -0.589 5.589 10 C -0.330 4.330 11 H 0.056 0.944 12 C -0.015 4.015 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.254 1.254 16 H -0.274 1.274 17 H -0.234 1.234 18 C 0.518 3.482 19 O -0.581 6.581 20 C -0.036 4.036 21 C -0.150 4.150 22 C -0.122 4.122 23 C -0.078 4.078 24 C -0.108 4.108 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.134 4.134 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.089 0.911 36 H 0.343 0.657 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.390 0.610 40 H 0.280 0.720 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.056 0.944 46 H 0.091 0.909 47 H 0.147 0.853 48 H 0.148 0.852 49 H 0.140 0.860 50 H 0.127 0.873 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.755 -32.215 5.305 39.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.336 5.336 3 C -0.003 4.003 4 C -0.073 4.073 5 N -0.310 5.310 6 C -0.069 4.069 7 C 0.236 3.764 8 O -0.497 6.497 9 N -0.231 5.231 10 C -0.459 4.459 11 H 0.074 0.926 12 C -0.214 4.214 13 N -0.573 5.573 14 Si 0.785 3.215 15 H -0.179 1.179 16 H -0.199 1.199 17 H -0.158 1.158 18 C 0.308 3.692 19 O -0.460 6.460 20 C -0.039 4.039 21 C -0.207 4.207 22 C -0.180 4.180 23 C -0.079 4.079 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.143 4.143 28 C -0.153 4.153 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.107 0.893 36 H 0.161 0.839 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.225 0.775 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.109 0.891 47 H 0.165 0.835 48 H 0.166 0.834 49 H 0.158 0.842 50 H 0.145 0.855 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.414 -31.307 5.958 38.962 hybrid contribution 1.458 0.131 -1.241 1.919 sum -20.956 -31.176 4.717 37.860 Atomic orbital electron populations 1.22565 0.77364 1.05035 1.03491 1.47827 1.08277 1.04875 1.72653 1.21287 0.97809 0.85078 0.96108 1.22241 0.98855 0.88426 0.97776 1.60044 1.28279 1.29956 1.12736 1.21622 1.00977 0.92561 0.91772 1.20882 0.83471 0.88419 0.83588 1.90543 1.59533 1.68486 1.31175 1.42019 1.52198 1.21289 1.07608 1.19014 1.33291 0.98537 0.95077 0.92614 1.26131 0.96063 0.96184 1.03012 1.69803 1.39392 1.17895 1.30214 0.85356 0.79374 0.80118 0.76617 1.17855 1.19909 1.15762 1.21060 0.87326 0.86348 0.74512 1.90700 1.16369 1.87862 1.51075 1.19782 0.95802 0.92007 0.96321 1.22244 0.99210 1.05336 0.93896 1.21678 0.97805 0.96694 1.01805 1.19449 0.97568 0.96856 0.93999 1.21170 0.95136 0.96806 0.99414 1.21479 0.99364 0.99644 0.92923 1.21478 0.98294 0.94704 0.99659 1.21300 0.96470 0.98860 0.97672 1.21203 1.00069 0.99632 0.94360 0.90322 0.90112 0.88733 0.87995 0.91993 0.96209 0.89271 0.83872 0.91331 0.86310 0.77457 0.91068 0.88848 0.92375 0.89527 0.94020 0.92510 0.89062 0.83518 0.83405 0.84235 0.85474 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 7.90 127.77 1.01 1.66 16 2 N -0.60 -11.25 2.22 -846.78 -1.88 -13.14 16 3 C 0.12 2.69 5.64 86.38 0.49 3.18 16 4 C 0.06 1.39 6.01 86.30 0.52 1.91 16 5 N -0.68 -21.47 6.13 -517.92 -3.17 -24.64 16 6 C 0.06 2.07 6.17 85.56 0.53 2.59 16 7 C 0.45 21.05 7.82 87.66 0.69 21.73 16 8 O -0.61 -35.07 15.78 -3.06 -0.05 -35.12 16 9 N -0.59 -28.64 5.09 -306.98 -1.56 -30.20 16 10 C -0.33 -19.75 10.16 84.04 0.85 -18.90 16 11 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 12 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 13 N -0.93 -56.92 13.96 21.66 0.30 -56.62 16 14 Si 0.97 39.43 27.74 68.60 1.90 41.33 16 15 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.23 -8.15 6.52 99.48 0.65 -7.50 16 18 C 0.52 11.65 4.88 87.66 0.43 12.08 16 19 O -0.58 -18.52 15.62 -3.03 -0.05 -18.56 16 20 C -0.04 -0.55 0.59 -53.67 -0.03 -0.58 16 21 C -0.15 -1.38 7.61 71.98 0.55 -0.83 16 22 C -0.12 -1.96 7.66 71.98 0.55 -1.40 16 23 C -0.08 -1.07 3.11 -19.87 -0.06 -1.13 16 24 C -0.11 -0.99 8.84 22.27 0.20 -0.79 16 25 C -0.12 -0.97 10.05 22.27 0.22 -0.75 16 26 C -0.12 -1.27 10.05 22.27 0.22 -1.04 16 27 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 28 C -0.13 -2.22 7.21 22.27 0.16 -2.06 16 29 H 0.08 0.64 7.11 -2.39 -0.02 0.62 16 30 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 31 H 0.09 1.01 3.40 -2.39 -0.01 1.00 16 32 H 0.10 2.02 8.07 -2.39 -0.02 2.00 16 33 H 0.06 1.67 7.50 -2.39 -0.02 1.65 16 34 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.34 12.00 8.43 -89.69 -0.76 11.25 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.39 15.69 5.76 -92.71 -0.53 15.16 16 40 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.09 0.44 7.35 -2.39 -0.02 0.42 16 42 H 0.06 0.64 8.12 -2.39 -0.02 0.62 16 43 H 0.09 0.62 4.51 -2.39 -0.01 0.61 16 44 H 0.04 0.86 8.03 -2.39 -0.02 0.84 16 45 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 46 H 0.09 0.90 7.88 -2.38 -0.02 0.88 16 47 H 0.15 0.65 7.27 -2.91 -0.02 0.63 16 48 H 0.15 0.49 8.06 -2.92 -0.02 0.47 16 49 H 0.14 0.89 8.06 -2.91 -0.02 0.86 16 50 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 51 H 0.10 2.10 5.98 -2.91 -0.02 2.08 16 Total: -1.00 -83.60 404.59 2.11 -81.49 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -0.39 Total: 41.67 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 7.01 Total: 13.79 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -6.32 Total: -124.60 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.10 Total: -53.69 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.90 Total: 41.33 kcal Total: -83.60 2.11 -81.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567603077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.955 kcal (2) G-P(sol) polarization free energy of solvation -83.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds