Wall clock time and date at job start Wed Apr 1 2020 04:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46722 * 2 1 4 4 C 1.50699 * 109.46813 * 120.00014 * 2 1 3 5 5 C 1.38357 * 119.45801 * 274.99924 * 4 2 1 6 6 C 1.38358 * 119.30236 * 180.02562 * 5 4 2 7 7 C 1.40029 * 118.28635 * 0.02562 * 6 5 4 8 8 C 1.47835 * 120.55621 * 179.97438 * 7 6 5 9 9 O 1.21558 * 119.99707 * 139.35682 * 8 7 6 10 10 N 1.34771 * 120.00327 * 319.35113 * 8 7 6 11 11 C 1.46929 * 120.62995 * 354.18176 * 10 8 7 12 12 C 1.53198 * 108.77367 * 233.58541 * 11 10 8 13 13 C 1.53040 * 109.33737 * 305.34489 * 12 11 10 14 14 C 1.53107 * 109.50405 * 61.34910 * 13 12 11 15 15 C 1.52998 * 109.51349 * 178.68314 * 14 13 12 16 16 O 1.42910 * 109.46935 * 184.87453 * 15 14 13 17 17 N 1.46505 * 109.48524 * 58.61400 * 14 13 12 18 18 C 1.36939 * 119.99458 * 180.14409 * 17 14 13 19 19 H 1.07999 * 120.00323 * 0.02562 * 18 17 14 20 20 C 1.38814 * 119.99533 * 179.97438 * 18 17 14 21 21 N 1.31613 * 120.00282 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46914 * 90.00217 * 22 20 18 24 24 H 1.48502 * 109.46670 * 210.00086 * 22 20 18 25 25 H 1.48494 * 109.47169 * 330.00038 * 22 20 18 26 26 C 1.46929 * 120.63296 * 174.15112 * 10 8 7 27 27 C 1.39520 * 118.88009 * 0.24930 * 7 6 5 28 28 N 1.31697 * 120.57001 * 359.50480 * 27 7 6 29 29 H 1.09010 * 109.46783 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47604 * 299.99839 * 1 2 3 31 31 H 1.09004 * 109.47464 * 60.00393 * 1 2 3 32 32 H 1.08994 * 109.47152 * 240.00421 * 2 1 3 33 33 H 1.09000 * 109.46963 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47662 * 300.00220 * 3 2 1 35 35 H 1.09003 * 109.46915 * 60.00190 * 3 2 1 36 36 H 1.08000 * 120.35210 * 0.02880 * 5 4 2 37 37 H 1.07996 * 120.85648 * 180.02562 * 6 5 4 38 38 H 1.08994 * 109.59073 * 113.79722 * 11 10 8 39 39 H 1.09002 * 109.58411 * 353.36947 * 11 10 8 40 40 H 1.08997 * 109.49660 * 65.31446 * 12 11 10 41 41 H 1.09000 * 109.49579 * 185.38166 * 12 11 10 42 42 H 1.08998 * 109.45852 * 181.40114 * 13 12 11 43 43 H 1.09005 * 109.46118 * 301.36592 * 13 12 11 44 44 H 1.08999 * 109.47544 * 304.86810 * 15 14 13 45 45 H 1.08995 * 109.47331 * 64.87377 * 15 14 13 46 46 H 0.96699 * 113.99810 * 180.02562 * 16 15 14 47 47 H 0.96995 * 119.99967 * 0.14521 * 17 14 13 48 48 H 0.96998 * 120.00507 * 180.02562 * 21 20 18 49 49 H 1.08993 * 109.58771 * 246.19980 * 26 10 8 50 50 H 1.08998 * 109.58693 * 6.48855 * 26 10 8 51 51 H 1.08005 * 119.71265 * 179.74563 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1601 -0.0093 2.4164 6 6 2.6220 -0.6646 3.5440 7 6 2.9445 -2.0230 3.4367 8 6 3.4430 -2.7721 4.6096 9 8 3.0588 -3.9071 4.8141 10 7 4.3236 -2.1968 5.4522 11 6 4.8945 -0.8767 5.1515 12 6 6.4222 -0.9755 5.2093 13 6 6.8422 -1.5471 6.5654 14 6 6.2600 -2.9536 6.7297 15 6 6.7068 -3.5381 8.0712 16 8 6.2582 -4.8911 8.1743 17 7 6.7360 -3.8098 5.6404 18 6 6.3413 -5.1196 5.5767 19 1 5.6790 -5.5212 6.3293 20 6 6.7919 -5.9308 4.5443 21 7 7.5986 -5.4412 3.6269 22 14 6.2530 -7.7173 4.4570 23 1 5.0044 -7.8193 3.6596 24 1 7.3195 -8.5250 3.8124 25 1 6.0068 -8.2276 5.8296 26 6 4.7305 -2.8773 6.6892 27 6 2.7929 -2.6561 2.2027 28 7 2.3448 -1.9901 1.1587 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.9019 1.0384 2.4615 37 1 2.7310 -0.1419 4.4827 38 1 4.5471 -0.1520 5.8878 39 1 4.5860 -0.5638 4.1540 40 1 6.7747 -1.6312 4.4131 41 1 6.8559 0.0164 5.0825 42 1 7.9298 -1.5950 6.6181 43 1 6.4680 -0.9041 7.3621 44 1 7.7945 -3.5102 8.1356 45 1 6.2795 -2.9507 8.8838 46 1 6.5061 -5.3256 9.0019 47 1 7.3306 -3.4490 4.9643 48 1 7.9132 -6.0079 2.9052 49 1 4.3698 -2.3157 7.5508 50 1 4.3117 -3.8835 6.7074 51 1 3.0416 -3.7025 2.1037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570286099.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:18 Heat of formation + Delta-G solvation = -26.341149 kcal Electronic energy + Delta-G solvation = -32456.446050 eV Core-core repulsion = 28356.457032 eV Total energy + Delta-G solvation = -4099.989018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.76307 -39.48134 -37.67685 -35.75832 -35.61913 -33.91508 -32.71332 -32.02106 -31.06183 -30.29498 -28.54947 -27.43580 -25.93498 -25.40817 -23.97271 -23.48337 -23.37779 -21.72948 -20.82654 -19.75585 -18.43592 -17.41504 -16.95496 -16.68083 -16.18752 -16.15516 -15.66267 -15.04435 -14.71753 -14.59155 -14.39160 -14.18808 -13.96811 -13.82243 -13.46902 -13.39530 -13.30561 -12.97915 -12.92010 -12.81878 -12.55016 -12.28729 -12.18869 -12.02800 -11.62847 -11.42577 -11.36628 -11.18638 -11.13938 -10.81814 -10.68191 -10.59682 -10.48441 -10.15591 -9.78830 -9.70870 -9.64206 -9.47126 -9.19753 -8.95422 -8.87380 -8.76377 -8.05720 -6.76891 -5.51837 -2.77256 0.85710 1.22943 3.13349 3.41592 3.62956 3.68940 3.71105 3.89996 4.09450 4.50194 4.71344 4.77090 4.81994 4.85060 4.90328 4.93118 5.02640 5.08420 5.10792 5.21953 5.34843 5.38820 5.44033 5.49778 5.55488 5.58380 5.63865 5.68165 5.72378 5.76945 5.78777 5.87170 5.91787 5.92609 6.01170 6.01710 6.03199 6.08520 6.18395 6.19739 6.25949 6.36862 6.60228 6.64029 6.78960 6.87942 7.08810 7.86977 8.00323 8.21645 8.40024 8.65719 8.69387 9.79545 10.26331 10.62017 11.71838 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.003658 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.245211 B = 7651.775330 C = 8853.035899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C -0.147 4.147 4 C 0.146 3.854 5 C -0.181 4.181 6 C -0.048 4.048 7 C -0.172 4.172 8 C 0.565 3.435 9 O -0.516 6.516 10 N -0.586 5.586 11 C 0.103 3.897 12 C -0.132 4.132 13 C -0.115 4.115 14 C 0.188 3.812 15 C 0.075 3.925 16 O -0.535 6.535 17 N -0.702 5.702 18 C -0.193 4.193 19 H 0.092 0.908 20 C -0.023 4.023 21 N -0.947 5.947 22 Si 0.901 3.099 23 H -0.293 1.293 24 H -0.298 1.298 25 H -0.283 1.283 26 C 0.110 3.890 27 C 0.161 3.839 28 N -0.484 5.484 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.038 0.962 45 H 0.023 0.977 46 H 0.351 0.649 47 H 0.381 0.619 48 H 0.248 0.752 49 H 0.046 0.954 50 H 0.104 0.896 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 18.834 1.108 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.205 4.205 4 C 0.008 3.992 5 C -0.201 4.201 6 C -0.074 4.074 7 C -0.177 4.177 8 C 0.351 3.649 9 O -0.391 6.391 10 N -0.319 5.319 11 C -0.020 4.020 12 C -0.170 4.170 13 C -0.153 4.153 14 C 0.095 3.905 15 C -0.006 4.006 16 O -0.338 6.338 17 N -0.342 5.342 18 C -0.324 4.324 19 H 0.109 0.891 20 C -0.216 4.216 21 N -0.598 5.598 22 Si 0.734 3.266 23 H -0.221 1.221 24 H -0.225 1.225 25 H -0.209 1.209 26 C -0.014 4.014 27 C 0.004 3.996 28 N -0.193 5.193 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.041 0.959 46 H 0.196 0.804 47 H 0.216 0.784 48 H 0.058 0.942 49 H 0.064 0.936 50 H 0.122 0.878 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.572 17.720 -0.153 20.141 hybrid contribution 0.530 -0.558 1.109 1.350 sum -9.042 17.162 0.956 19.422 Atomic orbital electron populations 1.21797 0.93585 1.02464 1.01992 1.20079 0.96196 0.95398 0.95141 1.21925 1.01540 0.94787 1.02217 1.21394 0.93141 0.90036 0.94622 1.21854 1.03368 1.01598 0.93251 1.21807 0.93754 0.92757 0.99082 1.21097 1.04725 0.95073 0.96799 1.17894 0.79573 0.85644 0.81785 1.90817 1.58313 1.16793 1.73179 1.47615 1.42595 1.18878 1.22763 1.21933 0.94388 0.84638 1.01026 1.21870 0.94954 1.01079 0.99145 1.21636 1.00977 0.95751 0.96931 1.19953 0.91951 0.89547 0.89083 1.22748 0.97249 0.83555 0.97089 1.86980 1.80016 1.25515 1.41243 1.42412 1.56271 1.08489 1.27020 1.19496 1.21356 0.85550 1.06040 0.89079 1.24636 1.00912 0.97909 0.98187 1.69652 1.38994 1.35192 1.15999 0.86239 0.77280 0.85841 0.77255 1.22098 1.22548 1.20930 1.22167 0.97283 0.99013 0.82920 1.22987 0.90227 1.00173 0.86259 1.67595 1.11726 1.08394 1.31543 0.92193 0.92520 0.91896 0.89083 0.92196 0.91849 0.92144 0.84381 0.84246 0.92014 0.89971 0.90018 0.91456 0.91467 0.92021 0.94384 0.95906 0.80436 0.78410 0.94203 0.93585 0.87778 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.17 37.16 0.34 -0.82 16 2 C -0.05 -0.47 3.23 -91.77 -0.30 -0.76 16 3 C -0.15 -1.06 8.61 37.16 0.32 -0.74 16 4 C 0.15 1.84 5.79 -82.51 -0.48 1.36 16 5 C -0.18 -1.98 9.16 -39.49 -0.36 -2.34 16 6 C -0.05 -0.59 7.52 -38.87 -0.29 -0.89 16 7 C -0.17 -2.84 5.11 -104.82 -0.54 -3.38 16 8 C 0.56 11.23 7.34 -12.34 -0.09 11.14 16 9 O -0.52 -12.57 16.37 5.31 0.09 -12.48 16 10 N -0.59 -10.29 2.89 -173.88 -0.50 -10.79 16 11 C 0.10 1.38 4.94 -3.71 -0.02 1.36 16 12 C -0.13 -1.87 5.91 -26.61 -0.16 -2.02 16 13 C -0.11 -1.68 4.77 -26.66 -0.13 -1.81 16 14 C 0.19 3.51 0.68 -131.66 -0.09 3.42 16 15 C 0.07 1.29 6.09 37.16 0.23 1.51 16 16 O -0.53 -10.34 10.05 -35.23 -0.35 -10.70 16 17 N -0.70 -16.99 4.75 -47.08 -0.22 -17.22 16 18 C -0.19 -5.43 8.07 -15.06 -0.12 -5.56 16 19 H 0.09 2.65 5.27 -52.49 -0.28 2.37 16 20 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 21 N -0.95 -29.49 13.06 55.49 0.72 -28.76 16 22 Si 0.90 24.52 29.55 -169.99 -5.02 19.50 16 23 H -0.29 -8.17 7.11 56.52 0.40 -7.77 16 24 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 25 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 26 C 0.11 2.06 4.92 -3.71 -0.02 2.05 16 27 C 0.16 2.81 10.82 -17.13 -0.19 2.63 16 28 N -0.48 -7.67 10.25 -9.14 -0.09 -7.76 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.37 6.48 -51.93 -0.34 0.03 16 36 H 0.14 1.06 6.29 -52.49 -0.33 0.73 16 37 H 0.14 1.39 6.71 -52.49 -0.35 1.04 16 38 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 39 H 0.08 1.04 4.77 -51.93 -0.25 0.80 16 40 H 0.08 1.47 6.75 -51.93 -0.35 1.11 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.35 5.02 9.12 45.56 0.42 5.44 16 47 H 0.38 9.94 6.43 -40.82 -0.26 9.68 16 48 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.10 2.40 5.82 -51.93 -0.30 2.10 16 51 H 0.17 3.13 8.06 -52.48 -0.42 2.71 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -36.19 395.72 -8.50 -44.69 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -7.10 Total: 13.20 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.98 Total: 4.36 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -0.10 Total: -64.53 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.27 Total: -23.18 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.02 Total: 19.50 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.19 -8.50 -44.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570286099.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.350 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds