Wall clock time and date at job start Wed Apr 1 2020 04:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46722 * 2 1 4 4 C 1.50699 * 109.46813 * 120.00014 * 2 1 3 5 5 C 1.38357 * 119.45801 * 274.99924 * 4 2 1 6 6 C 1.38358 * 119.30236 * 180.02562 * 5 4 2 7 7 C 1.40029 * 118.28635 * 0.02562 * 6 5 4 8 8 C 1.47835 * 120.55621 * 179.97438 * 7 6 5 9 9 O 1.21558 * 119.99707 * 139.35682 * 8 7 6 10 10 N 1.34771 * 120.00327 * 319.35113 * 8 7 6 11 11 C 1.46929 * 120.62995 * 354.18176 * 10 8 7 12 12 C 1.53198 * 108.77367 * 233.58541 * 11 10 8 13 13 C 1.53040 * 109.33737 * 305.34489 * 12 11 10 14 14 C 1.53107 * 109.50405 * 61.34910 * 13 12 11 15 15 C 1.52998 * 109.51349 * 178.68314 * 14 13 12 16 16 O 1.42910 * 109.46935 * 184.87453 * 15 14 13 17 17 N 1.46505 * 109.48524 * 58.61400 * 14 13 12 18 18 C 1.36939 * 119.99458 * 180.14409 * 17 14 13 19 19 H 1.07999 * 120.00323 * 0.02562 * 18 17 14 20 20 C 1.38814 * 119.99533 * 179.97438 * 18 17 14 21 21 N 1.31613 * 120.00282 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46914 * 90.00217 * 22 20 18 24 24 H 1.48502 * 109.46670 * 210.00086 * 22 20 18 25 25 H 1.48494 * 109.47169 * 330.00038 * 22 20 18 26 26 C 1.46929 * 120.63296 * 174.15112 * 10 8 7 27 27 C 1.39520 * 118.88009 * 0.24930 * 7 6 5 28 28 N 1.31697 * 120.57001 * 359.50480 * 27 7 6 29 29 H 1.09010 * 109.46783 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47604 * 299.99839 * 1 2 3 31 31 H 1.09004 * 109.47464 * 60.00393 * 1 2 3 32 32 H 1.08994 * 109.47152 * 240.00421 * 2 1 3 33 33 H 1.09000 * 109.46963 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47662 * 300.00220 * 3 2 1 35 35 H 1.09003 * 109.46915 * 60.00190 * 3 2 1 36 36 H 1.08000 * 120.35210 * 0.02880 * 5 4 2 37 37 H 1.07996 * 120.85648 * 180.02562 * 6 5 4 38 38 H 1.08994 * 109.59073 * 113.79722 * 11 10 8 39 39 H 1.09002 * 109.58411 * 353.36947 * 11 10 8 40 40 H 1.08997 * 109.49660 * 65.31446 * 12 11 10 41 41 H 1.09000 * 109.49579 * 185.38166 * 12 11 10 42 42 H 1.08998 * 109.45852 * 181.40114 * 13 12 11 43 43 H 1.09005 * 109.46118 * 301.36592 * 13 12 11 44 44 H 1.08999 * 109.47544 * 304.86810 * 15 14 13 45 45 H 1.08995 * 109.47331 * 64.87377 * 15 14 13 46 46 H 0.96699 * 113.99810 * 180.02562 * 16 15 14 47 47 H 0.96995 * 119.99967 * 0.14521 * 17 14 13 48 48 H 0.96998 * 120.00507 * 180.02562 * 21 20 18 49 49 H 1.08993 * 109.58771 * 246.19980 * 26 10 8 50 50 H 1.08998 * 109.58693 * 6.48855 * 26 10 8 51 51 H 1.08005 * 119.71265 * 179.74563 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1601 -0.0093 2.4164 6 6 2.6220 -0.6646 3.5440 7 6 2.9445 -2.0230 3.4367 8 6 3.4430 -2.7721 4.6096 9 8 3.0588 -3.9071 4.8141 10 7 4.3236 -2.1968 5.4522 11 6 4.8945 -0.8767 5.1515 12 6 6.4222 -0.9755 5.2093 13 6 6.8422 -1.5471 6.5654 14 6 6.2600 -2.9536 6.7297 15 6 6.7068 -3.5381 8.0712 16 8 6.2582 -4.8911 8.1743 17 7 6.7360 -3.8098 5.6404 18 6 6.3413 -5.1196 5.5767 19 1 5.6790 -5.5212 6.3293 20 6 6.7919 -5.9308 4.5443 21 7 7.5986 -5.4412 3.6269 22 14 6.2530 -7.7173 4.4570 23 1 5.0044 -7.8193 3.6596 24 1 7.3195 -8.5250 3.8124 25 1 6.0068 -8.2276 5.8296 26 6 4.7305 -2.8773 6.6892 27 6 2.7929 -2.6561 2.2027 28 7 2.3448 -1.9901 1.1587 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.9019 1.0384 2.4615 37 1 2.7310 -0.1419 4.4827 38 1 4.5471 -0.1520 5.8878 39 1 4.5860 -0.5638 4.1540 40 1 6.7747 -1.6312 4.4131 41 1 6.8559 0.0164 5.0825 42 1 7.9298 -1.5950 6.6181 43 1 6.4680 -0.9041 7.3621 44 1 7.7945 -3.5102 8.1356 45 1 6.2795 -2.9507 8.8838 46 1 6.5061 -5.3256 9.0019 47 1 7.3306 -3.4490 4.9643 48 1 7.9132 -6.0079 2.9052 49 1 4.3698 -2.3157 7.5508 50 1 4.3117 -3.8835 6.7074 51 1 3.0416 -3.7025 2.1037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570286099.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:17 Heat of formation + Delta-G solvation = -54.530324 kcal Electronic energy + Delta-G solvation = -32457.668425 eV Core-core repulsion = 28356.457032 eV Total energy + Delta-G solvation = -4101.211392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.97104 -40.77095 -39.16900 -37.18491 -36.49524 -35.59858 -34.26059 -33.36884 -32.55101 -31.41004 -30.37781 -28.02293 -27.27433 -26.64515 -25.59235 -25.03509 -24.51120 -22.97576 -21.78659 -21.02987 -19.89338 -19.26027 -18.31051 -17.84628 -17.72991 -17.28317 -17.09115 -16.53205 -16.06776 -15.81191 -15.74605 -15.56910 -15.26480 -15.05815 -14.81928 -14.77972 -14.44128 -14.36675 -14.14890 -13.75240 -13.73423 -13.54469 -13.45222 -13.21195 -12.92730 -12.84702 -12.73432 -12.58214 -12.21425 -12.07290 -12.06567 -11.95529 -11.84763 -11.80560 -11.34962 -11.31064 -11.11521 -10.87961 -10.73164 -10.55106 -10.42239 -10.03886 -9.52479 -8.79945 -7.81327 -5.01350 -0.28125 0.16926 1.36836 1.43328 1.47713 1.70611 2.12947 2.63510 2.71767 3.10055 3.39194 3.53085 3.62159 3.68771 3.77978 3.90450 3.96374 4.01501 4.09153 4.15503 4.18978 4.21775 4.29282 4.33687 4.53571 4.59128 4.60201 4.64459 4.68520 4.77023 4.82504 4.83817 4.88793 4.91623 4.92555 5.01536 5.02575 5.05241 5.07121 5.19195 5.23389 5.38474 5.44778 5.46229 5.51571 5.59095 5.72075 5.92921 6.43721 6.49235 6.87652 7.18150 7.24006 7.52804 8.22515 8.43614 9.43315 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.003658 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.245211 B = 7651.775330 C = 8853.035899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C -0.142 4.142 4 C 0.140 3.860 5 C -0.160 4.160 6 C -0.033 4.033 7 C -0.189 4.189 8 C 0.553 3.447 9 O -0.583 6.583 10 N -0.584 5.584 11 C 0.098 3.902 12 C -0.130 4.130 13 C -0.108 4.108 14 C 0.173 3.827 15 C 0.074 3.926 16 O -0.572 6.572 17 N -0.710 5.710 18 C -0.157 4.157 19 H 0.082 0.918 20 C -0.092 4.092 21 N -0.980 5.980 22 Si 0.942 3.058 23 H -0.312 1.312 24 H -0.298 1.298 25 H -0.274 1.274 26 C 0.114 3.886 27 C 0.132 3.868 28 N -0.510 5.510 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.188 0.812 37 H 0.177 0.823 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.373 0.627 47 H 0.369 0.631 48 H 0.238 0.762 49 H 0.089 0.911 50 H 0.050 0.950 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.849 24.604 3.114 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C -0.200 4.200 4 C 0.002 3.998 5 C -0.179 4.179 6 C -0.058 4.058 7 C -0.194 4.194 8 C 0.341 3.659 9 O -0.464 6.464 10 N -0.314 5.314 11 C -0.024 4.024 12 C -0.168 4.168 13 C -0.146 4.146 14 C 0.082 3.918 15 C -0.006 4.006 16 O -0.378 6.378 17 N -0.349 5.349 18 C -0.290 4.290 19 H 0.099 0.901 20 C -0.282 4.282 21 N -0.635 5.635 22 Si 0.776 3.224 23 H -0.241 1.241 24 H -0.225 1.225 25 H -0.199 1.199 26 C -0.011 4.011 27 C -0.025 4.025 28 N -0.219 5.219 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.205 0.795 37 H 0.194 0.806 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.128 0.872 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.055 0.945 45 H 0.087 0.913 46 H 0.220 0.780 47 H 0.202 0.798 48 H 0.047 0.953 49 H 0.107 0.893 50 H 0.069 0.931 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.445 23.541 1.934 25.827 hybrid contribution 0.719 -2.195 0.550 2.374 sum -9.726 21.346 2.484 23.589 Atomic orbital electron populations 1.21791 0.92394 1.01576 1.03738 1.20218 0.97060 0.96671 0.92981 1.21923 1.01147 0.92735 1.04156 1.22133 0.91838 0.88957 0.96898 1.22342 1.00672 1.03414 0.91468 1.22150 0.92090 0.90485 1.01117 1.20857 1.06720 0.97046 0.94817 1.18521 0.79590 0.85179 0.82577 1.90768 1.60943 1.19787 1.74876 1.47792 1.41536 1.20229 1.21832 1.22345 0.93705 0.83107 1.03195 1.21863 0.95595 1.02151 0.97211 1.21655 1.00876 0.93358 0.98686 1.20494 0.92014 0.91383 0.87935 1.22734 0.97379 0.83177 0.97312 1.86876 1.80501 1.27112 1.43291 1.42557 1.56016 1.07845 1.28494 1.19609 1.18084 0.87181 1.04080 0.90072 1.25154 1.03029 1.00634 0.99339 1.69758 1.41387 1.35509 1.16860 0.85537 0.76013 0.83685 0.77192 1.24128 1.22485 1.19884 1.22030 0.96749 0.97349 0.84935 1.22536 0.92805 0.99208 0.87951 1.67545 1.12679 1.10485 1.31141 0.94441 0.91130 0.89786 0.90624 0.92812 0.90168 0.90017 0.79487 0.80560 0.86718 0.89271 0.95012 0.87186 0.91593 0.87353 0.94518 0.91288 0.77960 0.79793 0.95315 0.89323 0.93112 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.17 71.98 0.66 -1.27 16 2 C -0.05 -0.85 3.23 -11.54 -0.04 -0.88 16 3 C -0.14 -1.44 8.61 71.98 0.62 -0.82 16 4 C 0.14 3.32 5.79 42.57 0.25 3.56 16 5 C -0.16 -2.84 9.16 22.33 0.20 -2.64 16 6 C -0.03 -0.71 7.52 22.73 0.17 -0.54 16 7 C -0.19 -6.40 5.11 -19.99 -0.10 -6.50 16 8 C 0.55 22.88 7.34 86.78 0.64 23.52 16 9 O -0.58 -30.88 16.37 -3.90 -0.06 -30.94 16 10 N -0.58 -19.82 2.89 -822.31 -2.38 -22.19 16 11 C 0.10 2.20 4.94 86.36 0.43 2.63 16 12 C -0.13 -3.23 5.91 30.67 0.18 -3.04 16 13 C -0.11 -2.72 4.77 30.64 0.15 -2.57 16 14 C 0.17 6.16 0.68 3.70 0.00 6.16 16 15 C 0.07 2.36 6.09 71.98 0.44 2.80 16 16 O -0.57 -21.80 10.05 -148.98 -1.50 -23.30 16 17 N -0.71 -35.24 4.75 -302.88 -1.44 -36.68 16 18 C -0.16 -9.19 8.07 84.03 0.68 -8.51 16 19 H 0.08 4.93 5.27 -2.91 -0.02 4.92 16 20 C -0.09 -5.82 5.50 84.86 0.47 -5.36 16 21 N -0.98 -64.46 13.06 21.65 0.28 -64.18 16 22 Si 0.94 53.31 29.55 68.60 2.03 55.34 16 23 H -0.31 -18.36 7.11 99.48 0.71 -17.66 16 24 H -0.30 -16.62 7.11 99.48 0.71 -15.91 16 25 H -0.27 -14.77 7.11 99.48 0.71 -14.06 16 26 C 0.11 4.10 4.92 86.36 0.42 4.53 16 27 C 0.13 5.04 10.82 85.02 0.92 5.96 16 28 N -0.51 -16.95 10.25 -182.82 -1.87 -18.83 16 29 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.49 6.48 -2.39 -0.02 0.47 16 36 H 0.19 1.54 6.29 -2.91 -0.02 1.52 16 37 H 0.18 2.47 6.71 -2.91 -0.02 2.45 16 38 H 0.11 1.51 8.13 -2.39 -0.02 1.49 16 39 H 0.09 1.92 4.77 -2.39 -0.01 1.91 16 40 H 0.03 1.12 6.75 -2.39 -0.02 1.10 16 41 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.37 10.31 9.12 -74.06 -0.68 9.63 16 47 H 0.37 19.98 6.43 -92.71 -0.60 19.38 16 48 H 0.24 15.56 8.31 -92.71 -0.77 14.79 16 49 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.05 2.41 5.82 -2.39 -0.01 2.40 16 51 H 0.13 5.60 8.06 -2.91 -0.02 5.58 16 Total: -1.00 -91.19 395.72 0.84 -90.35 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.31 Total: 33.40 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 6.08 Total: 17.03 kcal Atomic # 7 Polarization: -136.47 SS G_CDS: -5.41 Total: -141.88 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -1.56 Total: -54.24 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 2.03 Total: 55.34 kcal Total: -91.19 0.84 -90.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570286099.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.818 kcal (2) G-P(sol) polarization free energy of solvation -91.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds