Wall clock time and date at job start Wed Apr 1 2020 04:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47325 * 2 1 4 4 C 1.50699 * 109.47272 * 239.99938 * 2 1 3 5 5 C 1.38354 * 119.40729 * 84.99770 * 4 2 1 6 6 C 1.38336 * 119.46075 * 179.97438 * 5 4 2 7 7 C 1.39985 * 118.34658 * 0.02562 * 6 5 4 8 8 C 1.47528 * 120.59681 * 180.02562 * 7 6 5 9 9 O 1.21584 * 120.00370 * 217.66663 * 8 7 6 10 10 N 1.34773 * 119.99945 * 37.67332 * 8 7 6 11 11 C 1.46928 * 120.62961 * 5.73240 * 10 8 7 12 12 C 1.53195 * 108.77933 * 126.37223 * 11 10 8 13 13 C 1.53035 * 109.31118 * 54.63024 * 12 11 10 14 14 C 1.53039 * 109.54347 * 298.63884 * 13 12 11 15 15 C 1.46921 * 120.63343 * 185.45099 * 10 8 7 16 16 H 1.08998 * 109.58922 * 113.84249 * 15 10 8 17 17 C 1.53002 * 109.58543 * 353.41751 * 15 10 8 18 18 N 1.46496 * 109.47011 * 69.77479 * 17 15 10 19 19 C 1.36940 * 120.00200 * 175.29930 * 18 17 15 20 20 H 1.07998 * 119.99728 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00391 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99883 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00196 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47208 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47047 * 120.00003 * 23 21 19 26 26 H 1.48503 * 109.46981 * 239.99861 * 23 21 19 27 27 C 1.40283 * 118.81049 * 359.97438 * 7 6 5 28 28 O 1.35425 * 119.80113 * 179.97438 * 27 7 6 29 29 N 1.31879 * 119.40639 * 264.72786 * 4 2 1 30 30 H 1.08996 * 109.47039 * 60.00538 * 1 2 3 31 31 H 1.09009 * 109.46676 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46823 * 299.99834 * 1 2 3 33 33 H 1.09006 * 109.47069 * 120.00239 * 2 1 3 34 34 H 1.08999 * 109.47500 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46957 * 300.00396 * 3 2 1 36 36 H 1.09005 * 109.46521 * 59.99863 * 3 2 1 37 37 H 1.07999 * 120.27132 * 359.96353 * 5 4 2 38 38 H 1.07998 * 120.82999 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.58606 * 246.15683 * 11 10 8 40 40 H 1.09003 * 109.58805 * 6.43537 * 11 10 8 41 41 H 1.08993 * 109.50010 * 174.58776 * 12 11 10 42 42 H 1.09000 * 109.49479 * 294.68525 * 12 11 10 43 43 H 1.08999 * 109.46327 * 58.66527 * 13 12 11 44 44 H 1.09000 * 109.46139 * 178.63312 * 13 12 11 45 45 H 1.08993 * 109.50230 * 181.31962 * 14 13 12 46 46 H 1.09004 * 109.49532 * 301.38657 * 14 13 12 47 47 H 1.09002 * 109.47175 * 189.77172 * 17 15 10 48 48 H 1.08995 * 109.47407 * 309.77161 * 17 15 10 49 49 H 0.96999 * 120.00510 * 355.29090 * 18 17 15 50 50 H 0.97000 * 120.00411 * 180.02562 * 22 21 19 51 51 H 0.96695 * 114.00075 * 90.00730 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.1597 -0.0084 -2.4158 6 6 2.6213 -0.6593 -3.5458 7 6 2.9445 -2.0176 -3.4451 8 6 3.4416 -2.7602 -4.6189 9 8 3.0998 -3.9131 -4.7984 10 7 4.2748 -2.1607 -5.4922 11 6 4.7963 -0.8133 -5.2250 12 6 6.3249 -0.8482 -5.3205 13 6 6.7341 -1.4227 -6.6786 14 6 6.2092 -2.8544 -6.8080 15 6 4.6838 -2.8444 -6.7267 16 1 4.2782 -2.3154 -7.5890 17 6 4.1635 -4.2832 -6.7126 18 7 2.7058 -4.2767 -6.8585 19 6 2.0236 -5.4588 -6.9702 20 1 2.5602 -6.3958 -6.9510 21 6 0.6424 -5.4527 -7.1079 22 7 -0.0117 -4.3108 -7.1307 23 14 -0.2881 -7.0652 -7.2610 24 1 0.6713 -8.1974 -7.2079 25 1 -1.2582 -7.1849 -6.1429 26 1 -1.0173 -7.0951 -8.5543 27 6 2.7881 -2.6597 -2.2077 28 8 3.0943 -3.9734 -2.0878 29 7 2.3478 -1.9888 -1.1566 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.9008 1.0393 -2.4586 38 1 2.7289 -0.1328 -4.4827 39 1 4.4000 -0.1152 -5.9624 40 1 4.4976 -0.4975 -4.2254 41 1 6.7189 0.1630 -5.2195 42 1 6.7248 -1.4762 -4.5245 43 1 6.3133 -0.8083 -7.4746 44 1 7.8211 -1.4260 -6.7589 45 1 6.5210 -3.2710 -7.7657 46 1 6.6107 -3.4636 -5.9982 47 1 4.6088 -4.8387 -7.5379 48 1 4.4320 -4.7575 -5.7687 49 1 2.2238 -3.4352 -6.8760 50 1 -0.9769 -4.3065 -7.2266 51 1 4.0129 -4.1419 -1.8374 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570515175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:05 Heat of formation + Delta-G solvation = 13.644996 kcal Electronic energy + Delta-G solvation = -32584.276209 eV Core-core repulsion = 28486.021120 eV Total energy + Delta-G solvation = -4098.255089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.95966 -39.65551 -37.54091 -36.66559 -35.32091 -34.39547 -33.07512 -32.13257 -31.63068 -29.80555 -29.49617 -27.36960 -26.26941 -24.79089 -24.21598 -23.44869 -22.55541 -21.65000 -20.91938 -20.40684 -19.25904 -18.14083 -17.21561 -16.86751 -16.45947 -15.94881 -15.50997 -15.03385 -14.81063 -14.50413 -14.47953 -14.32993 -14.22883 -13.67623 -13.63182 -13.42876 -13.38387 -12.93725 -12.84741 -12.73357 -12.29701 -12.20415 -12.17834 -12.10264 -11.70485 -11.65452 -11.47345 -11.31820 -11.05727 -11.02892 -10.93277 -10.72891 -10.68514 -10.63307 -10.29211 -9.83381 -9.64310 -9.49685 -9.44366 -8.76160 -8.69665 -8.23952 -8.05865 -6.49908 -5.53479 -2.71866 0.83340 1.19112 3.26660 3.30943 3.57445 3.61981 3.63079 3.65182 3.86590 4.39947 4.59248 4.71267 4.76124 4.81015 4.87360 4.92171 4.94263 5.02104 5.06311 5.08126 5.17734 5.37162 5.39514 5.45909 5.51137 5.52102 5.59545 5.62277 5.69363 5.74570 5.76885 5.80870 5.84158 5.90297 5.95052 5.99965 6.06097 6.07035 6.08958 6.13054 6.17524 6.34522 6.48411 6.54781 6.68560 6.95051 7.29842 7.67001 7.90694 7.91571 7.99971 8.64666 8.94458 9.76128 10.35106 10.68943 11.70571 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008495 B = 0.004435 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.159766 B = 6311.962329 C = 8684.970051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C -0.146 4.146 4 C 0.167 3.833 5 C -0.190 4.190 6 C -0.037 4.037 7 C -0.178 4.178 8 C 0.514 3.486 9 O -0.415 6.415 10 N -0.612 5.612 11 C 0.101 3.899 12 C -0.133 4.133 13 C -0.117 4.117 14 C -0.127 4.127 15 C 0.145 3.855 16 H 0.068 0.932 17 C 0.158 3.842 18 N -0.695 5.695 19 C -0.205 4.205 20 H 0.066 0.934 21 C -0.021 4.021 22 N -0.937 5.937 23 Si 0.902 3.098 24 H -0.282 1.282 25 H -0.295 1.295 26 H -0.295 1.295 27 C 0.359 3.641 28 O -0.457 6.457 29 N -0.506 5.506 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.015 0.985 48 H 0.043 0.957 49 H 0.379 0.621 50 H 0.249 0.751 51 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.922 16.460 11.059 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.204 4.204 4 C 0.028 3.972 5 C -0.210 4.210 6 C -0.063 4.063 7 C -0.185 4.185 8 C 0.298 3.702 9 O -0.281 6.281 10 N -0.351 5.351 11 C -0.023 4.023 12 C -0.172 4.172 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.042 3.958 16 H 0.086 0.914 17 C 0.031 3.969 18 N -0.337 5.337 19 C -0.337 4.337 20 H 0.084 0.916 21 C -0.216 4.216 22 N -0.588 5.588 23 Si 0.734 3.266 24 H -0.208 1.208 25 H -0.222 1.222 26 H -0.223 1.223 27 C 0.179 3.821 28 O -0.262 6.262 29 N -0.225 5.225 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.033 0.967 48 H 0.061 0.939 49 H 0.212 0.788 50 H 0.059 0.941 51 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 12.034 14.942 11.540 22.389 hybrid contribution -0.306 -0.040 -0.754 0.815 sum 11.728 14.902 10.786 21.817 Atomic orbital electron populations 1.21815 0.93392 1.02723 1.02144 1.20092 0.96403 0.95287 0.94884 1.21926 1.01288 0.94785 1.02400 1.21015 0.93017 0.88347 0.94851 1.21850 1.04034 1.02005 0.93128 1.21840 0.92813 0.92680 0.98983 1.21307 1.06140 0.94670 0.96431 1.17822 0.81390 0.87881 0.83069 1.91242 1.52828 1.14552 1.69491 1.47702 1.48761 1.16707 1.21941 1.21959 0.93761 0.84868 1.01687 1.21915 0.95916 1.01084 0.98250 1.21496 1.00291 0.96623 0.97091 1.21836 0.95573 0.96688 1.02512 1.21395 0.93265 0.95514 0.85668 0.91384 1.20952 0.86831 0.90839 0.98297 1.42283 1.00066 1.06175 1.85205 1.19200 0.89523 0.86268 1.38726 0.91580 1.24611 0.96342 0.96388 1.04210 1.69660 1.06758 1.23584 1.58759 0.86158 0.80011 0.83502 0.76896 1.20751 1.22222 1.22320 1.19059 0.92004 0.84032 0.86957 1.84890 1.33428 1.17162 1.90743 1.67003 1.14101 1.08822 1.32600 0.92275 0.92080 0.91845 0.89200 0.92334 0.91962 0.91827 0.84147 0.83790 0.91861 0.89681 0.91255 0.91761 0.91853 0.92051 0.90827 0.91605 0.96734 0.93910 0.78791 0.94099 0.74785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.18 37.16 0.34 -1.02 16 2 C -0.05 -0.46 3.23 -91.77 -0.30 -0.76 16 3 C -0.15 -1.01 8.61 37.16 0.32 -0.69 16 4 C 0.17 2.16 5.79 -82.53 -0.48 1.68 16 5 C -0.19 -2.22 9.15 -39.50 -0.36 -2.59 16 6 C -0.04 -0.50 7.48 -38.89 -0.29 -0.80 16 7 C -0.18 -3.04 5.23 -104.69 -0.55 -3.59 16 8 C 0.51 9.95 6.63 -12.47 -0.08 9.87 16 9 O -0.41 -10.18 9.86 -11.29 -0.11 -10.29 16 10 N -0.61 -9.66 2.98 -166.70 -0.50 -10.16 16 11 C 0.10 1.13 4.87 -3.71 -0.02 1.12 16 12 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 13 C -0.12 -1.16 5.88 -26.69 -0.16 -1.31 16 14 C -0.13 -1.60 5.33 -26.83 -0.14 -1.74 16 15 C 0.14 2.40 2.91 -67.82 -0.20 2.20 16 16 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 17 C 0.16 3.42 4.86 -4.04 -0.02 3.40 16 18 N -0.69 -18.81 3.24 -59.91 -0.19 -19.01 16 19 C -0.21 -6.20 9.70 -15.06 -0.15 -6.35 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 22 N -0.94 -30.37 13.06 55.49 0.72 -29.65 16 23 Si 0.90 24.38 29.55 -169.99 -5.02 19.36 16 24 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.29 -8.10 7.11 56.52 0.40 -7.70 16 26 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 27 C 0.36 6.29 7.74 -16.61 -0.13 6.16 16 28 O -0.46 -8.19 12.29 -34.55 -0.42 -8.62 16 29 N -0.51 -8.12 10.28 -9.21 -0.09 -8.22 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.39 6.47 -51.93 -0.34 0.05 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.14 1.19 6.28 -52.49 -0.33 0.86 16 38 H 0.14 1.68 6.39 -52.49 -0.34 1.35 16 39 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.09 0.89 4.58 -51.93 -0.24 0.66 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 48 H 0.04 1.00 6.29 -51.93 -0.33 0.68 16 49 H 0.38 10.93 7.11 -40.82 -0.29 10.64 16 50 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 51 H 0.39 4.89 9.06 45.56 0.41 5.30 16 LS Contribution 395.12 15.07 5.95 5.95 Total: -1.00 -38.16 395.12 -9.46 -47.61 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.33 Total: 9.58 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -2.46 Total: 3.43 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.06 Total: -67.03 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.54 Total: -18.91 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.02 Total: 19.36 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.16 -9.46 -47.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570515175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.260 kcal (2) G-P(sol) polarization free energy of solvation -38.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds