Wall clock time and date at job start Wed Apr 1 2020 04:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47325 * 2 1 4 4 C 1.50699 * 109.47272 * 239.99938 * 2 1 3 5 5 C 1.38354 * 119.40729 * 84.99770 * 4 2 1 6 6 C 1.38336 * 119.46075 * 179.97438 * 5 4 2 7 7 C 1.39985 * 118.34658 * 0.02562 * 6 5 4 8 8 C 1.47528 * 120.59681 * 180.02562 * 7 6 5 9 9 O 1.21584 * 120.00370 * 217.66663 * 8 7 6 10 10 N 1.34773 * 119.99945 * 37.67332 * 8 7 6 11 11 C 1.46928 * 120.62961 * 5.73240 * 10 8 7 12 12 C 1.53195 * 108.77933 * 126.37223 * 11 10 8 13 13 C 1.53035 * 109.31118 * 54.63024 * 12 11 10 14 14 C 1.53039 * 109.54347 * 298.63884 * 13 12 11 15 15 C 1.46921 * 120.63343 * 185.45099 * 10 8 7 16 16 H 1.08998 * 109.58922 * 113.84249 * 15 10 8 17 17 C 1.53002 * 109.58543 * 353.41751 * 15 10 8 18 18 N 1.46496 * 109.47011 * 69.77479 * 17 15 10 19 19 C 1.36940 * 120.00200 * 175.29930 * 18 17 15 20 20 H 1.07998 * 119.99728 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00391 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99883 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00196 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47208 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47047 * 120.00003 * 23 21 19 26 26 H 1.48503 * 109.46981 * 239.99861 * 23 21 19 27 27 C 1.40283 * 118.81049 * 359.97438 * 7 6 5 28 28 O 1.35425 * 119.80113 * 179.97438 * 27 7 6 29 29 N 1.31879 * 119.40639 * 264.72786 * 4 2 1 30 30 H 1.08996 * 109.47039 * 60.00538 * 1 2 3 31 31 H 1.09009 * 109.46676 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46823 * 299.99834 * 1 2 3 33 33 H 1.09006 * 109.47069 * 120.00239 * 2 1 3 34 34 H 1.08999 * 109.47500 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46957 * 300.00396 * 3 2 1 36 36 H 1.09005 * 109.46521 * 59.99863 * 3 2 1 37 37 H 1.07999 * 120.27132 * 359.96353 * 5 4 2 38 38 H 1.07998 * 120.82999 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.58606 * 246.15683 * 11 10 8 40 40 H 1.09003 * 109.58805 * 6.43537 * 11 10 8 41 41 H 1.08993 * 109.50010 * 174.58776 * 12 11 10 42 42 H 1.09000 * 109.49479 * 294.68525 * 12 11 10 43 43 H 1.08999 * 109.46327 * 58.66527 * 13 12 11 44 44 H 1.09000 * 109.46139 * 178.63312 * 13 12 11 45 45 H 1.08993 * 109.50230 * 181.31962 * 14 13 12 46 46 H 1.09004 * 109.49532 * 301.38657 * 14 13 12 47 47 H 1.09002 * 109.47175 * 189.77172 * 17 15 10 48 48 H 1.08995 * 109.47407 * 309.77161 * 17 15 10 49 49 H 0.96999 * 120.00510 * 355.29090 * 18 17 15 50 50 H 0.97000 * 120.00411 * 180.02562 * 22 21 19 51 51 H 0.96695 * 114.00075 * 90.00730 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.1597 -0.0084 -2.4158 6 6 2.6213 -0.6593 -3.5458 7 6 2.9445 -2.0176 -3.4451 8 6 3.4416 -2.7602 -4.6189 9 8 3.0998 -3.9131 -4.7984 10 7 4.2748 -2.1607 -5.4922 11 6 4.7963 -0.8133 -5.2250 12 6 6.3249 -0.8482 -5.3205 13 6 6.7341 -1.4227 -6.6786 14 6 6.2092 -2.8544 -6.8080 15 6 4.6838 -2.8444 -6.7267 16 1 4.2782 -2.3154 -7.5890 17 6 4.1635 -4.2832 -6.7126 18 7 2.7058 -4.2767 -6.8585 19 6 2.0236 -5.4588 -6.9702 20 1 2.5602 -6.3958 -6.9510 21 6 0.6424 -5.4527 -7.1079 22 7 -0.0117 -4.3108 -7.1307 23 14 -0.2881 -7.0652 -7.2610 24 1 0.6713 -8.1974 -7.2079 25 1 -1.2582 -7.1849 -6.1429 26 1 -1.0173 -7.0951 -8.5543 27 6 2.7881 -2.6597 -2.2077 28 8 3.0943 -3.9734 -2.0878 29 7 2.3478 -1.9888 -1.1566 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.9008 1.0393 -2.4586 38 1 2.7289 -0.1328 -4.4827 39 1 4.4000 -0.1152 -5.9624 40 1 4.4976 -0.4975 -4.2254 41 1 6.7189 0.1630 -5.2195 42 1 6.7248 -1.4762 -4.5245 43 1 6.3133 -0.8083 -7.4746 44 1 7.8211 -1.4260 -6.7589 45 1 6.5210 -3.2710 -7.7657 46 1 6.6107 -3.4636 -5.9982 47 1 4.6088 -4.8387 -7.5379 48 1 4.4320 -4.7575 -5.7687 49 1 2.2238 -3.4352 -6.8760 50 1 -0.9769 -4.3065 -7.2266 51 1 4.0129 -4.1419 -1.8374 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570515175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:03 Heat of formation + Delta-G solvation = -15.141856 kcal Electronic energy + Delta-G solvation = -32585.524500 eV Core-core repulsion = 28486.021120 eV Total energy + Delta-G solvation = -4099.503380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.18531 -40.90587 -38.73066 -37.95299 -36.63093 -35.89948 -34.39495 -33.62061 -32.94278 -31.51567 -30.61823 -28.00874 -27.76329 -26.23979 -25.35125 -24.71181 -24.14121 -22.98377 -22.00157 -21.43101 -20.54282 -19.38631 -19.12004 -18.06239 -17.86967 -17.08939 -16.74980 -16.66658 -16.12702 -15.89888 -15.60769 -15.49377 -15.22804 -15.07847 -15.05753 -14.58563 -14.45625 -14.40381 -14.08970 -13.79803 -13.65380 -13.52125 -13.35841 -13.11869 -12.86128 -12.85472 -12.82046 -12.68574 -12.36459 -12.13374 -12.10628 -12.02282 -11.87794 -11.79622 -11.72746 -11.54743 -11.36290 -10.92432 -10.76776 -10.61605 -9.97421 -9.72028 -9.43932 -8.65008 -7.87383 -5.05430 -0.32725 0.08058 1.38964 1.42781 1.51223 1.97778 2.04862 2.47624 2.58722 2.65288 3.39032 3.47107 3.60304 3.65985 3.83259 3.91498 3.97095 4.00919 4.11087 4.15800 4.18942 4.26512 4.34670 4.39571 4.45198 4.48628 4.59895 4.64230 4.72668 4.82670 4.84811 4.87804 4.91225 4.95845 4.99350 5.05557 5.06716 5.12659 5.15238 5.21658 5.25314 5.33667 5.36492 5.45557 5.49261 5.49961 5.53260 5.84340 6.34650 6.50040 6.62280 6.85032 7.40404 7.52861 8.20884 8.42892 9.37825 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008495 B = 0.004435 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.159766 B = 6311.962329 C = 8684.970051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C -0.141 4.141 4 C 0.164 3.836 5 C -0.175 4.175 6 C -0.031 4.031 7 C -0.206 4.206 8 C 0.519 3.481 9 O -0.486 6.486 10 N -0.606 5.606 11 C 0.092 3.908 12 C -0.127 4.127 13 C -0.112 4.112 14 C -0.120 4.120 15 C 0.150 3.850 16 H 0.065 0.935 17 C 0.161 3.839 18 N -0.704 5.704 19 C -0.207 4.207 20 H 0.061 0.939 21 C -0.085 4.085 22 N -0.974 5.974 23 Si 0.964 3.036 24 H -0.270 1.270 25 H -0.303 1.303 26 H -0.288 1.288 27 C 0.338 3.662 28 O -0.485 6.485 29 N -0.529 5.529 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.185 0.815 38 H 0.166 0.834 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.014 0.986 48 H 0.023 0.977 49 H 0.366 0.634 50 H 0.244 0.756 51 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.402 20.187 11.624 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.198 4.198 4 C 0.026 3.974 5 C -0.194 4.194 6 C -0.057 4.057 7 C -0.213 4.213 8 C 0.305 3.695 9 O -0.358 6.358 10 N -0.343 5.343 11 C -0.029 4.029 12 C -0.165 4.165 13 C -0.150 4.150 14 C -0.158 4.158 15 C 0.046 3.954 16 H 0.083 0.917 17 C 0.035 3.965 18 N -0.344 5.344 19 C -0.340 4.340 20 H 0.079 0.921 21 C -0.276 4.276 22 N -0.627 5.627 23 Si 0.795 3.205 24 H -0.195 1.195 25 H -0.231 1.231 26 H -0.215 1.215 27 C 0.159 3.841 28 O -0.293 6.293 29 N -0.249 5.249 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.202 0.798 38 H 0.184 0.816 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.032 0.968 48 H 0.040 0.960 49 H 0.197 0.803 50 H 0.052 0.948 51 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 13.611 18.711 12.110 26.115 hybrid contribution -0.665 -1.065 -0.744 1.459 sum 12.946 17.646 11.366 24.661 Atomic orbital electron populations 1.21828 0.93141 1.01335 1.03677 1.20236 0.96439 0.96923 0.93009 1.21919 1.01523 0.92383 1.04012 1.21803 0.91325 0.87491 0.96827 1.22287 1.01795 1.03744 0.91574 1.22119 0.91847 0.91103 1.00602 1.21229 1.08514 0.96276 0.95316 1.18321 0.80509 0.87253 0.83427 1.91211 1.55431 1.17407 1.71714 1.47832 1.47470 1.18268 1.20704 1.22337 0.95419 0.82323 1.02854 1.21906 0.93974 1.02938 0.97702 1.21497 1.01636 0.94185 0.97639 1.21791 0.92027 0.99244 1.02783 1.21277 0.95946 0.92194 0.85947 0.91745 1.20972 0.84231 0.94561 0.96779 1.42309 1.01941 1.04493 1.85660 1.19499 0.90110 0.87284 1.37058 0.92129 1.25342 0.97224 0.99526 1.05487 1.69812 1.06388 1.25406 1.61119 0.85173 0.78550 0.80282 0.76536 1.19504 1.23115 1.21516 1.19269 0.93051 0.83898 0.87841 1.84825 1.35003 1.18434 1.91040 1.67055 1.14992 1.10450 1.32366 0.91755 0.94925 0.89339 0.89770 0.91972 0.90580 0.90049 0.79791 0.81626 0.89936 0.88674 0.87808 0.92487 0.90963 0.89730 0.89944 0.92326 0.96840 0.95975 0.80259 0.94759 0.73076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.18 71.98 0.66 -1.75 16 2 C -0.05 -0.80 3.23 -11.54 -0.04 -0.84 16 3 C -0.14 -1.35 8.61 71.98 0.62 -0.73 16 4 C 0.16 4.00 5.79 42.58 0.25 4.24 16 5 C -0.17 -3.55 9.15 22.32 0.20 -3.34 16 6 C -0.03 -0.79 7.48 22.72 0.17 -0.62 16 7 C -0.21 -7.14 5.23 -19.91 -0.10 -7.25 16 8 C 0.52 20.88 6.63 86.69 0.57 21.45 16 9 O -0.49 -25.45 9.86 11.88 0.12 -25.34 16 10 N -0.61 -18.99 2.98 -799.57 -2.38 -21.38 16 11 C 0.09 1.82 4.87 86.36 0.42 2.24 16 12 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 13 C -0.11 -1.81 5.88 30.62 0.18 -1.63 16 14 C -0.12 -2.84 5.33 30.53 0.16 -2.68 16 15 C 0.15 4.99 2.91 44.83 0.13 5.12 16 16 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 17 C 0.16 7.30 4.86 86.38 0.42 7.72 16 18 N -0.70 -40.02 3.24 -343.46 -1.11 -41.13 16 19 C -0.21 -13.05 9.70 84.03 0.82 -12.24 16 20 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 21 C -0.09 -5.47 5.50 84.86 0.47 -5.00 16 22 N -0.97 -65.58 13.06 21.65 0.28 -65.30 16 23 Si 0.96 52.01 29.55 68.60 2.03 54.03 16 24 H -0.27 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.30 -16.62 7.11 99.48 0.71 -15.91 16 26 H -0.29 -15.03 7.11 99.48 0.71 -14.33 16 27 C 0.34 12.34 7.74 85.13 0.66 13.00 16 28 O -0.48 -18.84 12.29 -71.35 -0.88 -19.72 16 29 N -0.53 -17.20 10.28 -296.05 -3.04 -20.24 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.54 6.47 -2.39 -0.02 0.52 16 36 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.18 2.11 6.28 -2.91 -0.02 2.09 16 38 H 0.17 3.37 6.39 -2.91 -0.02 3.35 16 39 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16 40 H 0.10 1.72 4.58 -2.39 -0.01 1.71 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.01 0.62 8.12 -2.39 -0.02 0.60 16 48 H 0.02 1.12 6.29 -2.39 -0.02 1.11 16 49 H 0.37 22.18 7.11 -92.71 -0.66 21.52 16 50 H 0.24 15.90 8.31 -92.71 -0.77 15.13 16 51 H 0.41 11.42 9.06 -74.06 -0.67 10.75 16 Total: -1.00 -90.14 395.12 0.42 -89.73 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.37 Total: 33.36 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 5.78 Total: 15.98 kcal Atomic # 7 Polarization: -141.79 SS G_CDS: -6.25 Total: -148.05 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.76 Total: -45.06 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.03 Total: 54.03 kcal Total: -90.14 0.42 -89.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570515175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.586 kcal (2) G-P(sol) polarization free energy of solvation -90.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds