Wall clock time and date at job start Wed Apr 1 2020 04:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47455 * 2 1 4 4 C 1.50700 * 109.47389 * 120.00399 * 2 1 3 5 5 C 1.37981 * 120.06970 * 306.13324 * 4 2 1 6 6 C 1.38339 * 120.14188 * 179.72720 * 5 4 2 7 7 C 1.38378 * 120.29355 * 0.29183 * 6 5 4 8 8 C 1.37936 * 120.14778 * 0.02562 * 7 6 5 9 9 C 1.39552 * 120.07785 * 126.42595 * 4 2 1 10 10 C 1.47849 * 120.14307 * 359.97438 * 9 4 2 11 11 O 1.21555 * 120.00131 * 39.37156 * 10 9 4 12 12 N 1.34779 * 120.00203 * 219.36408 * 10 9 4 13 13 C 1.46498 * 120.00054 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47064 * 180.02562 * 13 12 10 15 15 N 1.46905 * 109.47273 * 180.02562 * 14 13 12 16 16 C 1.46899 * 110.99943 * 66.04475 * 15 14 13 17 17 C 1.46900 * 110.99934 * 190.00345 * 15 14 13 18 18 C 1.50699 * 109.46988 * 169.99680 * 17 15 14 19 19 O 1.21291 * 119.99900 * 0.02562 * 18 17 15 20 20 N 1.34772 * 120.00233 * 179.97438 * 18 17 15 21 21 C 1.37098 * 120.00356 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99475 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00072 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00009 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99874 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46721 * 89.99818 * 25 23 21 27 27 H 1.48493 * 109.47054 * 209.99941 * 25 23 21 28 28 H 1.48500 * 109.47114 * 330.00077 * 25 23 21 29 29 H 1.09007 * 109.46976 * 299.99600 * 1 2 3 30 30 H 1.08997 * 109.47533 * 60.00019 * 1 2 3 31 31 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46917 * 240.00057 * 2 1 3 33 33 H 1.09003 * 109.47532 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47220 * 300.00299 * 3 2 1 35 35 H 1.08999 * 109.47011 * 60.00114 * 3 2 1 36 36 H 1.08000 * 119.92731 * 359.97438 * 5 4 2 37 37 H 1.07995 * 119.85124 * 180.28095 * 6 5 4 38 38 H 1.08004 * 119.93054 * 179.97438 * 7 6 5 39 39 H 1.08001 * 120.07911 * 179.97438 * 8 7 6 40 40 H 0.97001 * 119.99909 * 0.02562 * 12 10 9 41 41 H 1.08997 * 109.47497 * 300.00315 * 13 12 10 42 42 H 1.09002 * 109.46758 * 60.00425 * 13 12 10 43 43 H 1.08997 * 109.47136 * 300.00433 * 14 13 12 44 44 H 1.09002 * 109.47070 * 60.00513 * 14 13 12 45 45 H 1.08998 * 109.46814 * 60.00390 * 16 15 14 46 46 H 1.08997 * 109.47066 * 180.02562 * 16 15 14 47 47 H 1.09001 * 109.47177 * 300.00419 * 16 15 14 48 48 H 1.08993 * 109.46996 * 289.99592 * 17 15 14 49 49 H 1.08999 * 109.47196 * 50.00107 * 17 15 14 50 50 H 0.96998 * 119.99689 * 0.02562 * 20 18 17 51 51 H 0.96992 * 119.99929 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.5990 -0.3186 2.4804 6 6 2.0549 -0.9735 3.6105 7 6 2.9521 -2.0207 3.4962 8 6 3.3983 -2.4181 2.2530 9 6 2.9416 -1.7621 1.1085 10 6 3.4147 -2.1835 -0.2274 11 8 3.6539 -1.3492 -1.0784 12 7 3.5810 -3.4926 -0.5015 13 6 4.0493 -3.9100 -1.8253 14 6 4.1509 -5.4359 -1.8726 15 7 4.6211 -5.8546 -3.1999 16 6 5.9995 -5.4050 -3.4360 17 6 4.5064 -7.3098 -3.3641 18 6 4.7606 -7.6744 -4.8041 19 8 5.0130 -6.8072 -5.6137 20 7 4.7086 -8.9640 -5.1921 21 6 4.9404 -9.2957 -6.5020 22 1 5.1651 -8.5236 -7.2228 23 6 4.8862 -10.6253 -6.9020 24 7 4.6133 -11.5648 -6.0247 25 14 5.2027 -11.0773 -8.6867 26 1 6.6519 -11.3361 -8.8822 27 1 4.4308 -12.2977 -9.0326 28 1 4.7772 -9.9572 -9.5639 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.8993 0.4985 2.5765 37 1 1.7091 -0.6658 4.5863 38 1 3.3045 -2.5276 4.3825 39 1 4.0989 -3.2354 2.1651 40 1 3.3898 -4.1583 0.1776 41 1 3.3447 -3.5695 -2.5841 42 1 5.0295 -3.4741 -2.0180 43 1 4.8553 -5.7768 -1.1138 44 1 3.1704 -5.8715 -1.6800 45 1 6.6566 -5.8358 -2.6806 46 1 6.3224 -5.7278 -4.4258 47 1 6.0421 -4.3174 -3.3771 48 1 5.2400 -7.8060 -2.7288 49 1 3.5039 -7.6297 -3.0799 50 1 4.5072 -9.6575 -4.5445 51 1 4.5759 -12.4930 -6.3039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663197010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:36 Heat of formation + Delta-G solvation = -47.018412 kcal Electronic energy + Delta-G solvation = -29520.366192 eV Core-core repulsion = 25419.480540 eV Total energy + Delta-G solvation = -4100.885651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.78163 -38.95253 -38.51225 -36.80283 -35.76767 -34.58439 -33.80961 -31.82311 -31.25081 -30.18089 -29.32050 -27.69675 -27.36038 -25.49735 -24.40486 -23.79564 -23.24839 -21.27680 -20.74150 -20.26103 -19.17464 -18.03517 -17.85152 -16.71782 -16.29507 -16.04412 -15.98495 -15.46767 -15.25531 -14.87884 -14.58698 -14.47526 -14.35916 -14.08139 -14.00553 -13.75369 -13.66763 -13.46542 -13.26669 -13.00750 -12.71244 -12.52873 -12.34649 -12.13925 -12.02519 -11.87841 -11.53039 -11.44052 -11.38787 -11.28480 -11.17862 -11.00999 -10.95318 -10.94345 -10.38993 -10.22113 -9.94001 -9.48221 -9.37956 -9.21778 -9.06249 -8.48844 -7.99509 -7.89859 -6.42147 -3.82827 0.60240 0.95899 2.52488 2.85573 3.17763 3.26592 3.32787 3.40117 3.89544 4.03001 4.24684 4.30198 4.37698 4.45611 4.60025 4.80599 4.82148 4.94589 4.96239 5.02104 5.03612 5.11267 5.16309 5.24269 5.37543 5.38190 5.44476 5.54999 5.58432 5.62273 5.67249 5.67862 5.80304 5.82094 5.87218 5.87541 5.92175 5.95671 5.99339 6.04567 6.06395 6.20141 6.27028 6.33265 6.50070 6.54987 7.17122 7.25721 7.31714 7.55172 7.97622 8.06057 8.61397 9.17945 9.53865 10.05754 10.75611 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022258 B = 0.001619 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.692790 B =17285.603897 C =17761.996985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.134 4.134 4 C -0.019 4.019 5 C -0.123 4.123 6 C -0.097 4.097 7 C -0.131 4.131 8 C -0.087 4.087 9 C -0.130 4.130 10 C 0.558 3.442 11 O -0.525 6.525 12 N -0.723 5.723 13 C 0.121 3.879 14 C 0.044 3.956 15 N -0.515 5.515 16 C 0.018 3.982 17 C 0.047 3.953 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.400 0.600 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.015 0.985 46 H 0.098 0.902 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.089 0.911 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 18.470 23.046 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.020 4.020 5 C -0.141 4.141 6 C -0.115 4.115 7 C -0.149 4.149 8 C -0.106 4.106 9 C -0.134 4.134 10 C 0.345 3.655 11 O -0.402 6.402 12 N -0.374 5.374 13 C -0.002 4.002 14 C -0.085 4.085 15 N -0.239 5.239 16 C -0.130 4.130 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.234 0.766 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.098 0.902 45 H 0.034 0.966 46 H 0.117 0.883 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.107 0.893 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.164 19.652 21.453 29.739 hybrid contribution 0.472 -1.640 0.683 1.838 sum -5.692 18.012 22.136 29.100 Atomic orbital electron populations 1.21884 0.94461 1.01894 1.01908 1.20502 0.95570 0.96961 0.96680 1.21720 1.01634 0.94362 1.01400 1.19927 0.93650 0.92953 0.95443 1.20990 1.00958 1.00582 0.91554 1.21330 0.96244 0.95259 0.98674 1.21082 0.98461 0.98052 0.97321 1.21281 0.98820 0.98590 0.91876 1.19823 1.01332 0.99100 0.93103 1.18272 0.77570 0.82397 0.87262 1.90772 1.49866 1.51351 1.48237 1.45914 1.68284 1.07211 1.16004 1.21378 1.00957 0.94420 0.83480 1.22253 1.00905 0.94423 0.90882 1.61439 1.23863 1.12566 1.26020 1.22630 0.86932 1.00176 1.03239 1.21868 1.01924 0.87622 0.97009 1.19700 0.84744 0.83530 0.89143 1.90494 1.53448 1.48137 1.53922 1.41859 1.61822 1.05827 1.10586 1.19703 1.44648 0.92922 0.85508 0.87881 1.25261 0.97354 0.95356 0.99999 1.69610 1.49122 1.01062 1.34583 0.85855 0.78296 0.78054 0.82078 1.20443 1.20941 1.19391 0.92695 0.92092 0.92691 0.87743 0.92259 0.92267 0.93073 0.85450 0.85673 0.85483 0.85462 0.76614 0.90059 0.90966 0.94559 0.90245 0.96625 0.88347 0.91838 0.93346 0.89314 0.77511 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.94 37.15 0.33 -0.79 16 2 C -0.08 -0.76 2.65 -91.78 -0.24 -1.00 16 3 C -0.13 -1.17 9.06 37.16 0.34 -0.84 16 4 C -0.02 -0.18 4.81 -104.23 -0.50 -0.68 16 5 C -0.12 -0.91 8.76 -39.64 -0.35 -1.25 16 6 C -0.10 -0.61 10.04 -39.49 -0.40 -1.01 16 7 C -0.13 -0.83 10.03 -39.64 -0.40 -1.23 16 8 C -0.09 -0.65 9.34 -39.18 -0.37 -1.02 16 9 C -0.13 -1.27 5.76 -104.97 -0.61 -1.88 16 10 C 0.56 6.55 6.90 -12.33 -0.09 6.46 16 11 O -0.52 -7.94 14.48 5.32 0.08 -7.87 16 12 N -0.72 -7.10 5.48 -61.25 -0.34 -7.44 16 13 C 0.12 1.44 5.60 -4.04 -0.02 1.41 16 14 C 0.04 0.52 5.07 -3.82 -0.02 0.50 16 15 N -0.51 -8.34 4.50 -244.37 -1.10 -9.44 16 16 C 0.02 0.29 8.96 60.06 0.54 0.83 16 17 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 18 C 0.44 10.34 7.48 -10.99 -0.08 10.26 16 19 O -0.58 -15.41 13.91 5.55 0.08 -15.33 16 20 N -0.56 -14.15 5.29 -10.97 -0.06 -14.21 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 25 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 29 H 0.05 0.35 7.07 -51.93 -0.37 -0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 1.28 5.10 -51.93 -0.27 1.02 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.05 0.37 7.78 -51.93 -0.40 -0.04 16 36 H 0.13 0.73 7.10 -52.49 -0.37 0.36 16 37 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 39 H 0.13 0.72 7.81 -52.49 -0.41 0.31 16 40 H 0.40 2.83 7.86 -40.82 -0.32 2.50 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 0.93 6.55 -51.93 -0.34 0.59 16 43 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 44 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 45 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 47 H 0.06 0.92 6.47 -51.93 -0.34 0.59 16 48 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 49 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 50 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 51 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 413.62 15.07 6.23 6.23 Total: -1.00 -33.09 413.62 -9.53 -42.63 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -8.00 Total: 10.47 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.13 Total: 2.63 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.77 Total: -54.75 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.15 Total: -23.20 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.09 -9.53 -42.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663197010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.393 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds