Wall clock time and date at job start Wed Apr 1 2020 04:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47455 * 2 1 4 4 C 1.50700 * 109.47389 * 120.00399 * 2 1 3 5 5 C 1.37981 * 120.06970 * 306.13324 * 4 2 1 6 6 C 1.38339 * 120.14188 * 179.72720 * 5 4 2 7 7 C 1.38378 * 120.29355 * 0.29183 * 6 5 4 8 8 C 1.37936 * 120.14778 * 0.02562 * 7 6 5 9 9 C 1.39552 * 120.07785 * 126.42595 * 4 2 1 10 10 C 1.47849 * 120.14307 * 359.97438 * 9 4 2 11 11 O 1.21555 * 120.00131 * 39.37156 * 10 9 4 12 12 N 1.34779 * 120.00203 * 219.36408 * 10 9 4 13 13 C 1.46498 * 120.00054 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47064 * 180.02562 * 13 12 10 15 15 N 1.46905 * 109.47273 * 180.02562 * 14 13 12 16 16 C 1.46899 * 110.99943 * 66.04475 * 15 14 13 17 17 C 1.46900 * 110.99934 * 190.00345 * 15 14 13 18 18 C 1.50699 * 109.46988 * 169.99680 * 17 15 14 19 19 O 1.21291 * 119.99900 * 0.02562 * 18 17 15 20 20 N 1.34772 * 120.00233 * 179.97438 * 18 17 15 21 21 C 1.37098 * 120.00356 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99475 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00072 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00009 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99874 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46721 * 89.99818 * 25 23 21 27 27 H 1.48493 * 109.47054 * 209.99941 * 25 23 21 28 28 H 1.48500 * 109.47114 * 330.00077 * 25 23 21 29 29 H 1.09007 * 109.46976 * 299.99600 * 1 2 3 30 30 H 1.08997 * 109.47533 * 60.00019 * 1 2 3 31 31 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46917 * 240.00057 * 2 1 3 33 33 H 1.09003 * 109.47532 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47220 * 300.00299 * 3 2 1 35 35 H 1.08999 * 109.47011 * 60.00114 * 3 2 1 36 36 H 1.08000 * 119.92731 * 359.97438 * 5 4 2 37 37 H 1.07995 * 119.85124 * 180.28095 * 6 5 4 38 38 H 1.08004 * 119.93054 * 179.97438 * 7 6 5 39 39 H 1.08001 * 120.07911 * 179.97438 * 8 7 6 40 40 H 0.97001 * 119.99909 * 0.02562 * 12 10 9 41 41 H 1.08997 * 109.47497 * 300.00315 * 13 12 10 42 42 H 1.09002 * 109.46758 * 60.00425 * 13 12 10 43 43 H 1.08997 * 109.47136 * 300.00433 * 14 13 12 44 44 H 1.09002 * 109.47070 * 60.00513 * 14 13 12 45 45 H 1.08998 * 109.46814 * 60.00390 * 16 15 14 46 46 H 1.08997 * 109.47066 * 180.02562 * 16 15 14 47 47 H 1.09001 * 109.47177 * 300.00419 * 16 15 14 48 48 H 1.08993 * 109.46996 * 289.99592 * 17 15 14 49 49 H 1.08999 * 109.47196 * 50.00107 * 17 15 14 50 50 H 0.96998 * 119.99689 * 0.02562 * 20 18 17 51 51 H 0.96992 * 119.99929 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.5990 -0.3186 2.4804 6 6 2.0549 -0.9735 3.6105 7 6 2.9521 -2.0207 3.4962 8 6 3.3983 -2.4181 2.2530 9 6 2.9416 -1.7621 1.1085 10 6 3.4147 -2.1835 -0.2274 11 8 3.6539 -1.3492 -1.0784 12 7 3.5810 -3.4926 -0.5015 13 6 4.0493 -3.9100 -1.8253 14 6 4.1509 -5.4359 -1.8726 15 7 4.6211 -5.8546 -3.1999 16 6 5.9995 -5.4050 -3.4360 17 6 4.5064 -7.3098 -3.3641 18 6 4.7606 -7.6744 -4.8041 19 8 5.0130 -6.8072 -5.6137 20 7 4.7086 -8.9640 -5.1921 21 6 4.9404 -9.2957 -6.5020 22 1 5.1651 -8.5236 -7.2228 23 6 4.8862 -10.6253 -6.9020 24 7 4.6133 -11.5648 -6.0247 25 14 5.2027 -11.0773 -8.6867 26 1 6.6519 -11.3361 -8.8822 27 1 4.4308 -12.2977 -9.0326 28 1 4.7772 -9.9572 -9.5639 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.8993 0.4985 2.5765 37 1 1.7091 -0.6658 4.5863 38 1 3.3045 -2.5276 4.3825 39 1 4.0989 -3.2354 2.1651 40 1 3.3898 -4.1583 0.1776 41 1 3.3447 -3.5695 -2.5841 42 1 5.0295 -3.4741 -2.0180 43 1 4.8553 -5.7768 -1.1138 44 1 3.1704 -5.8715 -1.6800 45 1 6.6566 -5.8358 -2.6806 46 1 6.3224 -5.7278 -4.4258 47 1 6.0421 -4.3174 -3.3771 48 1 5.2400 -7.8060 -2.7288 49 1 3.5039 -7.6297 -3.0799 50 1 4.5072 -9.6575 -4.5445 51 1 4.5759 -12.4930 -6.3039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663197010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:35 Heat of formation + Delta-G solvation = -70.101072 kcal Electronic energy + Delta-G solvation = -29521.367131 eV Core-core repulsion = 25419.480540 eV Total energy + Delta-G solvation = -4101.886591 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.53207 -40.40411 -39.52236 -38.15015 -36.48236 -35.95207 -35.41373 -33.27411 -32.49329 -30.75684 -30.41203 -29.05831 -28.02184 -27.05733 -25.73201 -24.39647 -24.19621 -22.37027 -21.58315 -20.96385 -20.91118 -19.85120 -18.78476 -17.76493 -17.49941 -17.17118 -16.81838 -16.56412 -16.44133 -16.25681 -15.91710 -15.66248 -15.29157 -15.09787 -14.97911 -14.93616 -14.67535 -14.54279 -14.22564 -14.19913 -13.78104 -13.45402 -13.32483 -13.08642 -13.03867 -12.98129 -12.91548 -12.60824 -12.56838 -12.54543 -12.40000 -12.18682 -12.10912 -12.07761 -11.81911 -11.60060 -11.45449 -10.81013 -10.29152 -10.18019 -9.98793 -9.87710 -9.65658 -9.24839 -8.45800 -5.93946 -0.00315 0.42823 1.38025 1.41897 1.54375 1.70692 1.97451 2.07086 2.30615 2.81572 2.89911 3.21242 3.42338 3.64443 3.73433 3.81100 3.89530 4.04151 4.13986 4.25113 4.27308 4.28957 4.35603 4.44640 4.46387 4.50040 4.52890 4.54632 4.62731 4.63359 4.75941 4.82876 4.88793 4.89558 4.93544 4.95412 5.09914 5.19491 5.20156 5.21483 5.33713 5.36093 5.42256 5.42373 5.55123 5.67259 5.84815 5.99273 6.04643 6.15674 6.46647 6.62385 7.14531 7.14734 7.58255 8.14755 8.71542 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022258 B = 0.001619 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.692790 B =17285.603897 C =17761.996985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.036 4.036 5 C -0.128 4.128 6 C -0.092 4.092 7 C -0.131 4.131 8 C -0.088 4.088 9 C -0.154 4.154 10 C 0.555 3.445 11 O -0.569 6.569 12 N -0.708 5.708 13 C 0.131 3.869 14 C 0.053 3.947 15 N -0.539 5.539 16 C 0.025 3.975 17 C 0.060 3.940 18 C 0.439 3.561 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.416 0.584 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.036 0.964 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.115 0.885 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.945 18.003 26.304 32.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 C -0.187 4.187 4 C -0.037 4.037 5 C -0.146 4.146 6 C -0.110 4.110 7 C -0.149 4.149 8 C -0.106 4.106 9 C -0.157 4.157 10 C 0.343 3.657 11 O -0.450 6.450 12 N -0.360 5.360 13 C 0.006 3.994 14 C -0.075 4.075 15 N -0.264 5.264 16 C -0.123 4.123 17 C -0.070 4.070 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.162 0.838 40 H 0.253 0.747 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.133 0.867 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.919 19.151 24.765 32.062 hybrid contribution 0.695 -1.418 -0.252 1.600 sum -6.224 17.732 24.513 30.888 Atomic orbital electron populations 1.21842 0.93124 1.01791 1.02846 1.20427 0.96689 0.96970 0.95878 1.21683 1.00256 0.94338 1.02408 1.20018 0.94357 0.93269 0.96031 1.21205 1.01218 1.01146 0.91006 1.21726 0.95276 0.94477 0.99504 1.21453 0.97867 0.97901 0.97659 1.21509 0.98794 0.98728 0.91587 1.19786 1.02857 1.00550 0.92530 1.18721 0.76774 0.82351 0.87824 1.90749 1.51817 1.52572 1.49821 1.45720 1.67560 1.07196 1.15545 1.21117 0.99621 0.94713 0.83930 1.22240 1.02328 0.93791 0.89106 1.61320 1.23945 1.11896 1.29264 1.22464 0.87575 1.00834 1.01459 1.21736 1.04035 0.88685 0.92593 1.20826 0.82550 0.82401 0.91540 1.90477 1.54594 1.49120 1.56017 1.41917 1.62586 1.06755 1.09915 1.19637 1.46817 0.93066 0.86622 0.90473 1.26001 0.96580 0.94796 1.03863 1.69663 1.48966 1.01409 1.36035 0.84953 0.78519 0.77766 0.77249 1.19667 1.19510 1.19991 0.90756 0.92100 0.93281 0.91134 0.94313 0.92203 0.91046 0.83832 0.82824 0.82770 0.83792 0.74687 0.92620 0.92197 0.91888 0.88402 0.94561 0.92507 0.90934 0.90844 0.86742 0.76941 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.94 71.98 0.64 -1.47 16 2 C -0.08 -1.61 2.65 -11.54 -0.03 -1.64 16 3 C -0.13 -2.33 9.06 71.98 0.65 -1.67 16 4 C -0.04 -0.65 4.81 -19.61 -0.09 -0.74 16 5 C -0.13 -1.60 8.76 22.23 0.19 -1.41 16 6 C -0.09 -0.84 10.04 22.33 0.22 -0.61 16 7 C -0.13 -1.22 10.03 22.23 0.22 -0.99 16 8 C -0.09 -1.12 9.34 22.53 0.21 -0.91 16 9 C -0.15 -2.93 5.76 -20.09 -0.12 -3.05 16 10 C 0.55 13.33 6.90 86.79 0.60 13.93 16 11 O -0.57 -18.43 14.48 -3.89 -0.06 -18.48 16 12 N -0.71 -13.44 5.48 -465.97 -2.55 -15.99 16 13 C 0.13 3.07 5.60 86.38 0.48 3.55 16 14 C 0.05 1.13 5.07 86.30 0.44 1.57 16 15 N -0.54 -16.94 4.50 -927.06 -4.17 -21.12 16 16 C 0.02 0.79 8.96 127.69 1.14 1.93 16 17 C 0.06 2.00 5.45 85.56 0.47 2.47 16 18 C 0.44 20.77 7.48 87.66 0.66 21.43 16 19 O -0.62 -34.21 13.91 -3.06 -0.04 -34.26 16 20 N -0.57 -29.26 5.29 -306.99 -1.62 -30.88 16 21 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16 25 Si 0.99 43.15 29.55 68.60 2.03 45.17 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 29 H 0.07 0.82 7.07 -2.38 -0.02 0.80 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.90 5.10 -2.39 -0.01 1.88 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 0.95 7.78 -2.39 -0.02 0.93 16 36 H 0.14 1.23 7.10 -2.91 -0.02 1.21 16 37 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 38 H 0.15 0.59 8.06 -2.91 -0.02 0.56 16 39 H 0.14 1.23 7.81 -2.91 -0.02 1.21 16 40 H 0.42 5.04 7.86 -92.71 -0.73 4.31 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 1.56 6.55 -2.39 -0.02 1.55 16 43 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 44 H 0.10 1.76 7.93 -2.39 -0.02 1.74 16 45 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 2.32 5.82 -2.39 -0.01 2.30 16 47 H 0.07 2.15 6.47 -2.39 -0.02 2.13 16 48 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 49 H 0.11 3.23 7.93 -2.39 -0.02 3.21 16 50 H 0.40 19.02 7.90 -92.71 -0.73 18.28 16 51 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -75.80 413.62 0.33 -75.47 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.51 Total: 35.05 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 6.97 Total: 14.11 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -8.07 Total: -117.06 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -0.10 Total: -52.74 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -75.80 0.33 -75.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663197010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.367 kcal (2) G-P(sol) polarization free energy of solvation -75.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds