Wall clock time and date at job start Wed Apr 1 2020 04:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.50693 * 109.47512 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.07901 * 98.58642 * 4 3 2 6 6 C 1.38335 * 120.14413 * 180.02562 * 5 4 3 7 7 C 1.38380 * 120.29515 * 0.02562 * 6 5 4 8 8 C 1.37932 * 120.14640 * 0.02562 * 7 6 5 9 9 C 1.39560 * 120.06927 * 278.31750 * 4 3 2 10 10 C 1.47839 * 120.14963 * 359.97438 * 9 4 3 11 11 O 1.21561 * 119.99481 * 5.43238 * 10 9 4 12 12 N 1.34776 * 120.00562 * 185.43249 * 10 9 4 13 13 C 1.46497 * 119.99970 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47051 * 180.02562 * 13 12 10 15 15 N 1.46904 * 109.47132 * 179.97438 * 14 13 12 16 16 C 1.46896 * 110.99823 * 66.05016 * 15 14 13 17 17 C 1.46893 * 110.99779 * 190.00377 * 15 14 13 18 18 C 1.50701 * 109.47335 * 170.00431 * 17 15 14 19 19 O 1.21295 * 119.99305 * 359.97438 * 18 17 15 20 20 N 1.34776 * 120.00550 * 179.97438 * 18 17 15 21 21 C 1.37088 * 120.00078 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00645 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99843 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99959 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99958 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47328 * 59.99657 * 25 23 21 27 27 H 1.48500 * 109.47122 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46911 * 300.00027 * 25 23 21 29 29 H 1.09004 * 109.46844 * 299.99832 * 1 2 3 30 30 H 1.09000 * 109.46664 * 59.99900 * 1 2 3 31 31 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46844 * 240.00168 * 2 1 3 33 33 H 1.08999 * 109.47405 * 120.00114 * 2 1 3 34 34 H 1.08996 * 109.46967 * 59.99875 * 3 2 1 35 35 H 1.08999 * 109.46935 * 300.00402 * 3 2 1 36 36 H 1.07992 * 119.92421 * 0.02793 * 5 4 3 37 37 H 1.08007 * 119.84891 * 179.97438 * 6 5 4 38 38 H 1.08004 * 119.92410 * 179.97438 * 7 6 5 39 39 H 1.07997 * 120.07509 * 179.97438 * 8 7 6 40 40 H 0.97001 * 119.99753 * 0.02562 * 12 10 9 41 41 H 1.08998 * 109.47363 * 300.00183 * 13 12 10 42 42 H 1.09002 * 109.47213 * 60.00030 * 13 12 10 43 43 H 1.08998 * 109.47163 * 300.00276 * 14 13 12 44 44 H 1.09003 * 109.46875 * 60.00435 * 14 13 12 45 45 H 1.09000 * 109.47376 * 59.99659 * 16 15 14 46 46 H 1.08999 * 109.47308 * 180.02562 * 16 15 14 47 47 H 1.09009 * 109.46979 * 299.99809 * 16 15 14 48 48 H 1.09006 * 109.47279 * 289.99714 * 17 15 14 49 49 H 1.08995 * 109.47765 * 49.99927 * 17 15 14 50 50 H 0.97003 * 119.99432 * 359.97438 * 20 18 17 51 51 H 0.97002 * 119.99577 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2381 1.6209 -1.1815 6 6 5.6214 1.6207 -1.1838 7 6 6.3214 1.4412 -0.0036 8 6 5.6428 1.2607 1.1836 9 6 4.2468 1.2676 1.1941 10 6 3.5130 1.0823 2.4641 11 8 2.3015 0.9832 2.4571 12 7 4.1872 1.0234 3.6296 13 6 3.4600 0.8404 4.8881 14 6 4.4534 0.8086 6.0513 15 7 3.7241 0.6256 7.3133 16 6 3.0837 -0.6954 7.3645 17 6 4.6106 0.8260 8.4673 18 6 3.7887 0.8747 9.7296 19 8 2.5831 0.7547 9.6732 20 7 4.3934 1.0515 10.9211 21 6 3.6456 1.0963 12.0693 22 1 2.5720 0.9903 12.0191 23 6 4.2691 1.2780 13.2977 24 7 5.5754 1.4075 13.3588 25 14 3.2503 1.3383 14.8623 26 1 2.5106 0.0604 15.0210 27 1 4.1466 1.5390 16.0292 28 1 2.2838 2.4628 14.7806 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6768 1.9563 0.8899 35 1 1.6767 1.9563 -0.8899 36 1 3.6978 1.7612 -2.1060 37 1 6.1575 1.7604 -2.1109 38 1 7.4014 1.4416 -0.0123 39 1 6.1902 1.1203 2.1039 40 1 5.1540 1.1029 3.6352 41 1 2.7631 1.6666 5.0285 42 1 2.9079 -0.0989 4.8554 43 1 5.1506 -0.0175 5.9111 44 1 5.0050 1.7481 6.0838 45 1 3.8449 -1.4715 7.2850 46 1 2.5504 -0.8043 8.3088 47 1 2.3802 -0.7904 6.5373 48 1 5.3206 0.0011 8.5277 49 1 5.1528 1.7643 8.3505 50 1 5.3576 1.1471 10.9661 51 1 6.0106 1.5340 14.2164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663226550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:39 Heat of formation + Delta-G solvation = -45.597030 kcal Electronic energy + Delta-G solvation = -29483.708007 eV Core-core repulsion = 25382.883991 eV Total energy + Delta-G solvation = -4100.824016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.74397 -38.87527 -38.45139 -36.82207 -35.53340 -34.39899 -33.80336 -31.81655 -31.37329 -31.24952 -29.33575 -27.71130 -26.74822 -25.39307 -24.33136 -23.47513 -22.41926 -21.36228 -21.10027 -20.53606 -19.17227 -18.06151 -17.85000 -16.55535 -16.17508 -16.05615 -15.87570 -15.58792 -15.36370 -15.04406 -14.69921 -14.59922 -14.28724 -14.13133 -14.06720 -13.70213 -13.55743 -13.44480 -13.21770 -12.98788 -12.72399 -12.37074 -12.18119 -12.13085 -11.92871 -11.82033 -11.52812 -11.41558 -11.30893 -11.27787 -11.14833 -11.05946 -10.92677 -10.68478 -10.44004 -10.21526 -9.79882 -9.47195 -9.41703 -9.21394 -9.00750 -8.48658 -7.99441 -7.89715 -6.41975 -3.82667 0.51270 0.95509 2.63657 2.86138 3.20239 3.25923 3.30538 3.49778 3.89669 4.03500 4.25410 4.36409 4.39862 4.42157 4.60956 4.81644 4.88545 4.95822 4.99866 5.03494 5.09144 5.11752 5.20619 5.24363 5.37695 5.38416 5.50578 5.59847 5.62645 5.68206 5.71635 5.77976 5.82709 5.87066 5.87940 5.92015 5.96025 5.99731 6.03368 6.07047 6.15599 6.26660 6.33018 6.37192 6.50233 6.55153 7.17837 7.27757 7.32515 7.55037 8.02794 8.05877 8.61563 9.17944 9.53909 10.05904 10.75684 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.001649 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.402483 B =16972.909364 C =18028.150196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.088 4.088 4 C -0.019 4.019 5 C -0.130 4.130 6 C -0.092 4.092 7 C -0.135 4.135 8 C -0.084 4.084 9 C -0.136 4.136 10 C 0.554 3.446 11 O -0.521 6.521 12 N -0.725 5.725 13 C 0.123 3.877 14 C 0.044 3.956 15 N -0.514 5.514 16 C 0.018 3.982 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.397 0.603 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.015 0.985 46 H 0.098 0.902 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.089 0.911 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -1.022 -29.738 30.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.125 4.125 4 C -0.020 4.020 5 C -0.148 4.148 6 C -0.111 4.111 7 C -0.153 4.153 8 C -0.103 4.103 9 C -0.139 4.139 10 C 0.342 3.658 11 O -0.399 6.399 12 N -0.378 5.378 13 C 0.000 4.000 14 C -0.085 4.085 15 N -0.239 5.239 16 C -0.130 4.130 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.232 0.768 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.034 0.966 46 H 0.116 0.884 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.107 0.893 50 H 0.225 0.775 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.147 -0.798 -29.532 29.620 hybrid contribution 1.611 -0.431 0.826 1.861 sum 3.758 -1.229 -28.706 28.977 Atomic orbital electron populations 1.21711 0.95711 1.01343 1.01693 1.21348 0.95839 0.95539 1.01626 1.20887 0.89433 0.98646 1.03567 1.20090 0.96683 0.93730 0.91456 1.21089 0.94250 1.01797 0.97643 1.21358 0.94275 0.97102 0.98315 1.21085 1.00223 1.01535 0.92433 1.21312 0.92954 0.97381 0.98609 1.19826 0.93547 1.06950 0.93551 1.18228 0.87252 0.76966 0.83384 1.90761 1.13347 1.48976 1.86818 1.45881 1.10772 1.74555 1.06574 1.21349 0.94706 1.03164 0.80826 1.22259 0.94980 1.01353 0.89919 1.61442 1.30949 1.31709 0.99760 1.22628 0.98345 0.86994 1.04992 1.21868 0.94156 1.01595 0.90807 1.19702 0.88691 0.84551 0.84196 1.90494 1.14360 1.54888 1.86278 1.41850 1.09814 1.63392 1.04999 1.19653 0.93301 1.46641 0.83266 0.87936 1.25258 0.95919 0.97281 0.99475 1.69602 1.08183 1.49668 1.26924 0.85916 0.79047 0.79046 0.80198 1.19929 1.21001 1.19876 0.92200 0.93309 0.93064 0.93210 0.91095 0.88079 0.92023 0.85440 0.85627 0.85448 0.85648 0.76814 0.90092 0.91009 0.94588 0.90295 0.96637 0.88361 0.91836 0.93360 0.89325 0.77508 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.11 -1.04 5.44 -26.73 -0.15 -1.18 16 3 C -0.09 -0.85 4.61 -27.89 -0.13 -0.98 16 4 C -0.02 -0.17 5.17 -104.23 -0.54 -0.71 16 5 C -0.13 -0.95 9.66 -39.64 -0.38 -1.34 16 6 C -0.09 -0.58 10.04 -39.49 -0.40 -0.97 16 7 C -0.13 -0.84 10.03 -39.64 -0.40 -1.24 16 8 C -0.08 -0.61 9.53 -39.18 -0.37 -0.98 16 9 C -0.14 -1.30 5.87 -104.97 -0.62 -1.92 16 10 C 0.55 6.31 7.64 -12.33 -0.09 6.22 16 11 O -0.52 -7.34 11.59 5.31 0.06 -7.28 16 12 N -0.73 -7.05 5.51 -61.25 -0.34 -7.38 16 13 C 0.12 1.45 5.60 -4.04 -0.02 1.43 16 14 C 0.04 0.51 5.07 -3.82 -0.02 0.50 16 15 N -0.51 -8.33 4.50 -244.37 -1.10 -9.43 16 16 C 0.02 0.29 8.96 60.06 0.54 0.83 16 17 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 18 C 0.44 10.34 7.47 -10.99 -0.08 10.26 16 19 O -0.58 -15.41 13.91 5.54 0.08 -15.33 16 20 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 21 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 25 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.84 6.57 -51.93 -0.34 0.50 16 34 H 0.10 1.19 5.96 -51.93 -0.31 0.88 16 35 H 0.06 0.49 8.02 -51.93 -0.42 0.08 16 36 H 0.13 0.71 8.04 -52.49 -0.42 0.28 16 37 H 0.13 0.49 8.06 -52.48 -0.42 0.06 16 38 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 39 H 0.13 0.63 6.45 -52.49 -0.34 0.29 16 40 H 0.40 2.75 6.54 -40.82 -0.27 2.49 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 43 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 44 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 45 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.10 1.94 5.83 -51.93 -0.30 1.63 16 47 H 0.06 0.92 6.47 -51.92 -0.34 0.59 16 48 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 49 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 50 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 51 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 411.22 15.07 6.20 6.20 Total: -1.00 -32.63 411.22 -9.97 -42.61 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -7.96 Total: 10.72 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -2.56 Total: 1.77 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.77 Total: -54.67 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.14 Total: -22.62 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.63 -9.97 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663226550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.991 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds