Wall clock time and date at job start Wed Apr 1 2020 04:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.50693 * 109.47512 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.07901 * 98.58642 * 4 3 2 6 6 C 1.38335 * 120.14413 * 180.02562 * 5 4 3 7 7 C 1.38380 * 120.29515 * 0.02562 * 6 5 4 8 8 C 1.37932 * 120.14640 * 0.02562 * 7 6 5 9 9 C 1.39560 * 120.06927 * 278.31750 * 4 3 2 10 10 C 1.47839 * 120.14963 * 359.97438 * 9 4 3 11 11 O 1.21561 * 119.99481 * 5.43238 * 10 9 4 12 12 N 1.34776 * 120.00562 * 185.43249 * 10 9 4 13 13 C 1.46497 * 119.99970 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47051 * 180.02562 * 13 12 10 15 15 N 1.46904 * 109.47132 * 179.97438 * 14 13 12 16 16 C 1.46896 * 110.99823 * 66.05016 * 15 14 13 17 17 C 1.46893 * 110.99779 * 190.00377 * 15 14 13 18 18 C 1.50701 * 109.47335 * 170.00431 * 17 15 14 19 19 O 1.21295 * 119.99305 * 359.97438 * 18 17 15 20 20 N 1.34776 * 120.00550 * 179.97438 * 18 17 15 21 21 C 1.37088 * 120.00078 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00645 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99843 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99959 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99958 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47328 * 59.99657 * 25 23 21 27 27 H 1.48500 * 109.47122 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46911 * 300.00027 * 25 23 21 29 29 H 1.09004 * 109.46844 * 299.99832 * 1 2 3 30 30 H 1.09000 * 109.46664 * 59.99900 * 1 2 3 31 31 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46844 * 240.00168 * 2 1 3 33 33 H 1.08999 * 109.47405 * 120.00114 * 2 1 3 34 34 H 1.08996 * 109.46967 * 59.99875 * 3 2 1 35 35 H 1.08999 * 109.46935 * 300.00402 * 3 2 1 36 36 H 1.07992 * 119.92421 * 0.02793 * 5 4 3 37 37 H 1.08007 * 119.84891 * 179.97438 * 6 5 4 38 38 H 1.08004 * 119.92410 * 179.97438 * 7 6 5 39 39 H 1.07997 * 120.07509 * 179.97438 * 8 7 6 40 40 H 0.97001 * 119.99753 * 0.02562 * 12 10 9 41 41 H 1.08998 * 109.47363 * 300.00183 * 13 12 10 42 42 H 1.09002 * 109.47213 * 60.00030 * 13 12 10 43 43 H 1.08998 * 109.47163 * 300.00276 * 14 13 12 44 44 H 1.09003 * 109.46875 * 60.00435 * 14 13 12 45 45 H 1.09000 * 109.47376 * 59.99659 * 16 15 14 46 46 H 1.08999 * 109.47308 * 180.02562 * 16 15 14 47 47 H 1.09009 * 109.46979 * 299.99809 * 16 15 14 48 48 H 1.09006 * 109.47279 * 289.99714 * 17 15 14 49 49 H 1.08995 * 109.47765 * 49.99927 * 17 15 14 50 50 H 0.97003 * 119.99432 * 359.97438 * 20 18 17 51 51 H 0.97002 * 119.99577 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2381 1.6209 -1.1815 6 6 5.6214 1.6207 -1.1838 7 6 6.3214 1.4412 -0.0036 8 6 5.6428 1.2607 1.1836 9 6 4.2468 1.2676 1.1941 10 6 3.5130 1.0823 2.4641 11 8 2.3015 0.9832 2.4571 12 7 4.1872 1.0234 3.6296 13 6 3.4600 0.8404 4.8881 14 6 4.4534 0.8086 6.0513 15 7 3.7241 0.6256 7.3133 16 6 3.0837 -0.6954 7.3645 17 6 4.6106 0.8260 8.4673 18 6 3.7887 0.8747 9.7296 19 8 2.5831 0.7547 9.6732 20 7 4.3934 1.0515 10.9211 21 6 3.6456 1.0963 12.0693 22 1 2.5720 0.9903 12.0191 23 6 4.2691 1.2780 13.2977 24 7 5.5754 1.4075 13.3588 25 14 3.2503 1.3383 14.8623 26 1 2.5106 0.0604 15.0210 27 1 4.1466 1.5390 16.0292 28 1 2.2838 2.4628 14.7806 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6768 1.9563 0.8899 35 1 1.6767 1.9563 -0.8899 36 1 3.6978 1.7612 -2.1060 37 1 6.1575 1.7604 -2.1109 38 1 7.4014 1.4416 -0.0123 39 1 6.1902 1.1203 2.1039 40 1 5.1540 1.1029 3.6352 41 1 2.7631 1.6666 5.0285 42 1 2.9079 -0.0989 4.8554 43 1 5.1506 -0.0175 5.9111 44 1 5.0050 1.7481 6.0838 45 1 3.8449 -1.4715 7.2850 46 1 2.5504 -0.8043 8.3088 47 1 2.3802 -0.7904 6.5373 48 1 5.3206 0.0011 8.5277 49 1 5.1528 1.7643 8.3505 50 1 5.3576 1.1471 10.9661 51 1 6.0106 1.5340 14.2164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663226550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:38 Heat of formation + Delta-G solvation = -67.803783 kcal Electronic energy + Delta-G solvation = -29484.670964 eV Core-core repulsion = 25382.883991 eV Total energy + Delta-G solvation = -4101.786973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.47921 -40.39395 -39.35678 -38.14026 -36.39928 -35.87051 -35.19769 -33.27244 -32.47922 -31.98573 -30.41029 -29.06786 -27.48173 -26.96857 -25.58521 -24.36211 -23.11016 -22.40066 -21.89044 -21.33112 -20.95356 -19.84763 -18.78171 -17.75690 -17.40669 -16.92392 -16.73294 -16.56626 -16.44257 -16.25925 -16.12874 -15.72469 -15.58375 -15.18679 -14.99208 -14.89372 -14.70095 -14.56553 -14.13836 -14.04016 -13.77475 -13.44589 -13.35483 -13.04470 -12.97414 -12.94520 -12.86346 -12.58572 -12.54935 -12.45451 -12.41221 -12.16428 -12.09757 -12.03963 -11.75177 -11.49036 -11.44745 -10.65109 -10.28615 -10.17120 -9.98752 -9.86131 -9.63155 -9.24538 -8.45446 -5.93620 -0.08962 0.42833 1.40059 1.41937 1.52498 1.89925 1.98288 2.07413 2.30874 2.88753 2.90764 3.21586 3.42802 3.71132 3.79673 3.82183 3.93046 4.06318 4.12678 4.24341 4.25365 4.29826 4.35919 4.45444 4.47063 4.50947 4.53210 4.55547 4.63281 4.63724 4.77215 4.84214 4.89893 4.94319 4.96409 5.02014 5.05350 5.20295 5.22742 5.32721 5.33758 5.40030 5.42191 5.52331 5.53623 5.68416 5.85146 5.99006 6.04841 6.16239 6.52826 6.62685 7.14778 7.22489 7.58467 8.15016 8.71626 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.001649 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.402483 B =16972.909364 C =18028.150196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.084 4.084 4 C -0.039 4.039 5 C -0.136 4.136 6 C -0.088 4.088 7 C -0.135 4.135 8 C -0.085 4.085 9 C -0.158 4.158 10 C 0.548 3.452 11 O -0.558 6.558 12 N -0.713 5.713 13 C 0.133 3.867 14 C 0.052 3.948 15 N -0.539 5.539 16 C 0.025 3.975 17 C 0.060 3.940 18 C 0.439 3.561 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.273 1.273 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.413 0.587 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.098 0.902 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.115 0.885 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.800 -0.858 -31.605 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C -0.121 4.121 4 C -0.040 4.040 5 C -0.154 4.154 6 C -0.106 4.106 7 C -0.153 4.153 8 C -0.103 4.103 9 C -0.161 4.161 10 C 0.337 3.663 11 O -0.438 6.438 12 N -0.366 5.366 13 C 0.009 3.991 14 C -0.075 4.075 15 N -0.264 5.264 16 C -0.123 4.123 17 C -0.071 4.071 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.199 1.199 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.165 0.835 40 H 0.251 0.749 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.116 0.884 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.133 0.867 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.904 -0.631 -31.415 31.802 hybrid contribution 0.785 -0.480 1.286 1.581 sum 5.688 -1.111 -30.130 30.682 Atomic orbital electron populations 1.21694 0.95447 1.01583 1.01514 1.21286 0.96080 0.95720 1.00831 1.20773 0.90392 0.98161 1.02801 1.20187 0.96349 0.95035 0.92399 1.21318 0.95097 1.01494 0.97442 1.21754 0.93876 0.95389 0.99608 1.21474 1.01670 1.00248 0.91879 1.21582 0.91918 0.96628 1.00209 1.19799 0.94656 1.09062 0.92545 1.18680 0.87040 0.76238 0.84367 1.90752 1.15039 1.50634 1.87395 1.45684 1.11459 1.74032 1.05434 1.21072 0.94635 1.01456 0.81955 1.22250 0.94711 1.03311 0.87271 1.61325 1.32083 1.31818 1.01139 1.22460 0.98884 0.87918 1.03036 1.21737 0.93385 1.03919 0.88017 1.20829 0.88789 0.82204 0.85520 1.90477 1.16610 1.55970 1.87162 1.41910 1.09874 1.64217 1.05143 1.19603 0.92680 1.48860 0.85101 0.90459 1.25998 0.97073 0.96347 1.01793 1.69658 1.09026 1.49459 1.27898 0.85019 0.77781 0.78833 0.76877 1.19812 1.19432 1.19880 0.94110 0.91677 0.92614 0.91947 0.93701 0.90932 0.90533 0.83822 0.82832 0.82702 0.83537 0.74918 0.92617 0.92346 0.92035 0.88358 0.94650 0.92526 0.90925 0.90898 0.86716 0.76941 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.91 71.98 0.71 -2.03 16 2 C -0.10 -2.06 5.44 30.59 0.17 -1.89 16 3 C -0.08 -1.67 4.61 29.85 0.14 -1.54 16 4 C -0.04 -0.70 5.17 -19.61 -0.10 -0.80 16 5 C -0.14 -1.72 9.66 22.23 0.21 -1.50 16 6 C -0.09 -0.81 10.04 22.33 0.22 -0.58 16 7 C -0.14 -1.22 10.03 22.23 0.22 -1.00 16 8 C -0.08 -1.03 9.53 22.53 0.21 -0.81 16 9 C -0.16 -2.92 5.87 -20.09 -0.12 -3.03 16 10 C 0.55 12.69 7.64 86.78 0.66 13.36 16 11 O -0.56 -16.81 11.59 -3.91 -0.05 -16.86 16 12 N -0.71 -13.22 5.51 -465.97 -2.57 -15.79 16 13 C 0.13 3.09 5.60 86.38 0.48 3.58 16 14 C 0.05 1.11 5.07 86.30 0.44 1.55 16 15 N -0.54 -16.90 4.50 -927.05 -4.17 -21.07 16 16 C 0.02 0.80 8.96 127.69 1.14 1.95 16 17 C 0.06 2.00 5.45 85.56 0.47 2.46 16 18 C 0.44 20.75 7.47 87.66 0.66 21.40 16 19 O -0.62 -34.19 13.91 -3.08 -0.04 -34.23 16 20 N -0.57 -29.23 5.29 -306.98 -1.62 -30.85 16 21 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 25 Si 0.99 43.11 29.55 68.60 2.03 45.13 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 1.14 6.57 -2.39 -0.02 1.12 16 34 H 0.07 1.86 5.96 -2.39 -0.01 1.85 16 35 H 0.08 1.21 8.02 -2.39 -0.02 1.19 16 36 H 0.14 1.25 8.04 -2.91 -0.02 1.22 16 37 H 0.15 0.52 8.06 -2.91 -0.02 0.50 16 38 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 39 H 0.15 1.00 6.45 -2.91 -0.02 0.98 16 40 H 0.41 4.77 6.54 -92.71 -0.61 4.17 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.52 6.55 -2.39 -0.02 1.50 16 43 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 44 H 0.10 1.74 7.93 -2.39 -0.02 1.72 16 45 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 2.31 5.83 -2.39 -0.01 2.30 16 47 H 0.07 2.15 6.47 -2.38 -0.02 2.13 16 48 H 0.07 2.09 8.12 -2.38 -0.02 2.07 16 49 H 0.11 3.22 7.93 -2.39 -0.02 3.21 16 50 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 51 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -74.61 411.22 0.28 -74.33 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.39 Total: 35.55 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.81 Total: 12.81 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -8.08 Total: -116.74 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.09 Total: -51.09 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -74.61 0.28 -74.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663226550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.526 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds