Wall clock time and date at job start Wed Apr 1 2020 04:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.50693 * 109.47512 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.07901 * 98.58642 * 4 3 2 6 6 C 1.38335 * 120.14413 * 180.02562 * 5 4 3 7 7 C 1.38380 * 120.29515 * 0.02562 * 6 5 4 8 8 C 1.37932 * 120.14640 * 0.02562 * 7 6 5 9 9 C 1.39560 * 120.06927 * 278.31750 * 4 3 2 10 10 C 1.47839 * 120.14963 * 359.97438 * 9 4 3 11 11 O 1.21561 * 119.99481 * 5.43238 * 10 9 4 12 12 N 1.34776 * 120.00562 * 185.43249 * 10 9 4 13 13 C 1.46497 * 119.99970 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47051 * 180.02562 * 13 12 10 15 15 H 1.08992 * 109.47023 * 295.00320 * 14 13 12 16 16 C 1.53000 * 109.47075 * 174.99761 * 14 13 12 17 17 N 1.46908 * 109.46822 * 55.00398 * 14 13 12 18 18 C 1.46896 * 110.99603 * 204.99889 * 17 14 13 19 19 C 1.50704 * 109.46763 * 179.97438 * 18 17 14 20 20 O 1.21285 * 120.00005 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99571 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99306 * 179.97438 * 21 19 18 23 23 H 1.07993 * 120.00350 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99477 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00262 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00022 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47067 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47172 * 119.99711 * 26 24 22 29 29 H 1.48497 * 109.47512 * 239.99997 * 26 24 22 30 30 H 1.09004 * 109.46844 * 299.99832 * 1 2 3 31 31 H 1.09000 * 109.46664 * 59.99900 * 1 2 3 32 32 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46844 * 240.00168 * 2 1 3 34 34 H 1.08999 * 109.47405 * 120.00114 * 2 1 3 35 35 H 1.08996 * 109.46967 * 59.99875 * 3 2 1 36 36 H 1.08999 * 109.46935 * 300.00402 * 3 2 1 37 37 H 1.07992 * 119.92421 * 0.02793 * 5 4 3 38 38 H 1.08007 * 119.84891 * 179.97438 * 6 5 4 39 39 H 1.08004 * 119.92410 * 179.97438 * 7 6 5 40 40 H 1.07997 * 120.07509 * 179.97438 * 8 7 6 41 41 H 0.97001 * 119.99753 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47363 * 300.00183 * 13 12 10 43 43 H 1.09002 * 109.47213 * 60.00030 * 13 12 10 44 44 H 1.09003 * 109.46709 * 179.97438 * 16 14 13 45 45 H 1.08992 * 109.47651 * 300.00174 * 16 14 13 46 46 H 1.09005 * 109.46909 * 60.00842 * 16 14 13 47 47 H 1.00896 * 110.99680 * 81.04313 * 17 14 13 48 48 H 1.08998 * 109.47687 * 299.99830 * 18 17 14 49 49 H 1.09003 * 109.47036 * 60.00069 * 18 17 14 50 50 H 0.96995 * 119.99970 * 0.02562 * 21 19 18 51 51 H 0.97004 * 120.00705 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2381 1.6209 -1.1815 6 6 5.6214 1.6207 -1.1838 7 6 6.3214 1.4412 -0.0036 8 6 5.6428 1.2607 1.1836 9 6 4.2468 1.2676 1.1941 10 6 3.5130 1.0823 2.4641 11 8 2.3015 0.9832 2.4571 12 7 4.1872 1.0234 3.6296 13 6 3.4600 0.8404 4.8881 14 6 4.4534 0.8086 6.0513 15 1 5.0939 -0.0684 5.9581 16 6 3.6877 0.7429 7.3743 17 7 5.2792 2.0233 6.0233 18 6 6.5703 1.7974 6.6867 19 6 7.3882 3.0623 6.6377 20 8 6.9399 4.0540 6.1024 21 7 8.6182 3.0910 7.1878 22 6 9.3625 4.2415 7.1427 23 1 8.9630 5.1248 6.6669 24 6 10.6304 4.2713 7.7104 25 7 11.1163 3.1967 8.2899 26 14 11.6443 5.8391 7.6497 27 1 10.8762 6.8984 6.9475 28 1 11.9501 6.2846 9.0329 29 1 12.9121 5.5808 6.9211 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6768 1.9563 0.8899 36 1 1.6767 1.9563 -0.8899 37 1 3.6978 1.7612 -2.1060 38 1 6.1575 1.7604 -2.1109 39 1 7.4014 1.4416 -0.0123 40 1 6.1902 1.1203 2.1039 41 1 5.1540 1.1029 3.6352 42 1 2.7631 1.6666 5.0285 43 1 2.9079 -0.0989 4.8554 44 1 4.3956 0.7197 8.2029 45 1 3.0473 1.6198 7.4674 46 1 3.0750 -0.1585 7.3951 47 1 4.7906 2.8022 6.4386 48 1 6.4005 1.5141 7.7254 49 1 7.1067 0.9982 6.1751 50 1 8.9772 2.2975 7.6149 51 1 12.0016 3.2173 8.6858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690600615.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:25 Heat of formation + Delta-G solvation = -61.083963 kcal Electronic energy + Delta-G solvation = -30181.046223 eV Core-core repulsion = 26079.550643 eV Total energy + Delta-G solvation = -4101.495579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.48718 -38.72046 -38.22020 -36.91161 -35.25089 -34.07359 -33.68498 -31.63624 -31.24915 -31.16448 -30.45934 -26.99689 -26.42271 -25.94411 -24.02859 -23.52909 -22.25960 -21.19155 -20.84445 -20.25850 -19.34091 -17.98812 -17.75400 -16.43050 -16.06726 -15.94208 -15.57763 -15.42118 -15.16785 -14.94239 -14.64148 -14.53544 -14.27286 -13.94052 -13.89009 -13.64368 -13.40454 -13.23533 -13.06361 -12.69268 -12.57348 -12.38862 -12.22292 -12.15107 -12.03779 -11.71144 -11.65203 -11.61723 -11.44276 -11.19443 -11.09967 -11.02533 -10.91676 -10.58351 -10.37593 -10.26432 -9.56451 -9.55985 -9.15180 -8.94486 -8.73834 -8.54448 -8.15544 -8.00603 -6.46022 -3.86869 0.78959 1.23718 2.89171 3.13218 3.23545 3.24394 3.31458 3.77410 3.85523 4.02367 4.26200 4.60981 4.65817 4.70357 4.76457 4.88337 4.96768 5.05763 5.08771 5.12834 5.17350 5.23357 5.23909 5.30755 5.39702 5.47073 5.57074 5.59393 5.66585 5.69582 5.76361 5.80797 5.83784 5.85173 5.87779 5.96270 6.01567 6.09235 6.17272 6.20148 6.21339 6.29872 6.31961 6.52413 6.60050 6.77291 7.10065 7.51494 7.54905 7.63695 8.02069 8.30162 8.56450 9.13845 9.49656 10.00782 10.71631 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.002333 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.484308 B =11998.349262 C =13795.938833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.086 4.086 4 C -0.023 4.023 5 C -0.133 4.133 6 C -0.093 4.093 7 C -0.133 4.133 8 C -0.078 4.078 9 C -0.135 4.135 10 C 0.554 3.446 11 O -0.537 6.537 12 N -0.707 5.707 13 C 0.136 3.864 14 C 0.067 3.933 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.408 0.592 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.354 0.646 48 H 0.045 0.955 49 H 0.085 0.915 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.210 -10.210 -13.042 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.123 4.123 4 C -0.024 4.024 5 C -0.151 4.151 6 C -0.112 4.112 7 C -0.151 4.151 8 C -0.097 4.097 9 C -0.138 4.138 10 C 0.342 3.658 11 O -0.417 6.417 12 N -0.359 5.359 13 C 0.011 3.989 14 C -0.044 4.044 15 H 0.102 0.898 16 C -0.240 4.240 17 N -0.297 5.297 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.245 0.755 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.174 0.826 48 H 0.063 0.937 49 H 0.103 0.897 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.934 -9.748 -13.900 22.611 hybrid contribution 1.303 0.300 1.327 1.884 sum -13.631 -9.449 -12.573 20.813 Atomic orbital electron populations 1.21706 0.95967 1.01092 1.01576 1.21343 0.95551 0.95807 1.01600 1.20842 0.89680 0.98378 1.03351 1.20033 0.96469 0.94343 0.91534 1.21034 0.94234 1.02297 0.97524 1.21338 0.94249 0.97284 0.98284 1.21122 1.00387 1.01182 0.92402 1.21394 0.93033 0.96479 0.98749 1.19818 0.93565 1.06873 0.93535 1.18242 0.87110 0.76817 0.83654 1.90703 1.13443 1.50431 1.87130 1.45753 1.11606 1.73016 1.05528 1.21320 0.93947 1.01476 0.82137 1.21865 0.94524 0.94460 0.93530 0.89818 1.22429 1.01077 1.02708 0.97771 1.60184 1.03950 1.05403 1.60124 1.21724 0.91102 0.98154 0.97357 1.19804 0.83510 0.89555 0.84678 1.90539 1.71565 1.36109 1.48380 1.41876 1.13636 1.14045 1.50458 1.19743 0.96756 0.91591 1.34722 0.87876 1.25263 0.97387 0.98652 0.96661 1.69613 1.18603 1.28250 1.37800 0.85808 0.79352 0.81312 0.77935 1.19209 1.20768 1.20717 0.92356 0.93364 0.93239 0.93277 0.91079 0.88175 0.92257 0.85665 0.85747 0.85370 0.85350 0.75491 0.91471 0.91326 0.91935 0.91958 0.91848 0.82610 0.93680 0.89682 0.77496 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.11 -1.13 5.44 -26.73 -0.15 -1.28 16 3 C -0.09 -0.96 4.61 -27.89 -0.13 -1.09 16 4 C -0.02 -0.27 5.17 -104.23 -0.54 -0.81 16 5 C -0.13 -1.33 9.66 -39.64 -0.38 -1.71 16 6 C -0.09 -0.88 10.04 -39.49 -0.40 -1.28 16 7 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16 8 C -0.08 -0.90 9.53 -39.18 -0.37 -1.27 16 9 C -0.13 -1.71 5.87 -104.97 -0.62 -2.32 16 10 C 0.55 7.53 7.64 -12.33 -0.09 7.43 16 11 O -0.54 -8.10 11.59 5.31 0.06 -8.04 16 12 N -0.71 -8.73 5.34 -61.25 -0.33 -9.05 16 13 C 0.14 1.53 5.37 -4.04 -0.02 1.51 16 14 C 0.07 0.72 2.75 -67.71 -0.19 0.53 16 15 H 0.08 0.84 7.80 -51.93 -0.40 0.43 16 16 C -0.18 -1.69 9.16 37.16 0.34 -1.35 16 17 N -0.66 -9.46 5.31 -107.99 -0.57 -10.04 16 18 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16 19 C 0.44 9.83 7.82 -10.98 -0.09 9.74 16 20 O -0.58 -15.21 15.78 5.55 0.09 -15.12 16 21 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 22 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 26 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.90 6.57 -51.93 -0.34 0.56 16 35 H 0.10 1.34 5.96 -51.93 -0.31 1.03 16 36 H 0.06 0.57 8.02 -51.93 -0.42 0.15 16 37 H 0.13 0.98 8.04 -52.49 -0.42 0.56 16 38 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 40 H 0.13 1.36 6.45 -52.49 -0.34 1.03 16 41 H 0.41 4.96 6.21 -40.82 -0.25 4.70 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 45 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.35 5.49 8.17 -39.29 -0.32 5.17 16 48 H 0.05 0.65 7.44 -51.93 -0.39 0.27 16 49 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 50 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 51 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 416.14 15.07 6.27 6.27 Total: -1.00 -31.35 416.14 -9.83 -41.18 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -8.06 Total: 17.95 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.93 Total: -1.73 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.23 Total: -56.22 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.15 Total: -23.16 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.35 -9.83 -41.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690600615.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.907 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds