Wall clock time and date at job start Wed Apr 1 2020 04:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.50693 * 109.47512 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.07901 * 98.58642 * 4 3 2 6 6 C 1.38335 * 120.14413 * 180.02562 * 5 4 3 7 7 C 1.38380 * 120.29515 * 0.02562 * 6 5 4 8 8 C 1.37932 * 120.14640 * 0.02562 * 7 6 5 9 9 C 1.39560 * 120.06927 * 278.31750 * 4 3 2 10 10 C 1.47839 * 120.14963 * 359.97438 * 9 4 3 11 11 O 1.21561 * 119.99481 * 5.43238 * 10 9 4 12 12 N 1.34776 * 120.00562 * 185.43249 * 10 9 4 13 13 C 1.46497 * 119.99970 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47051 * 180.02562 * 13 12 10 15 15 H 1.08992 * 109.47023 * 295.00320 * 14 13 12 16 16 C 1.53000 * 109.47075 * 174.99761 * 14 13 12 17 17 N 1.46908 * 109.46822 * 55.00398 * 14 13 12 18 18 C 1.46896 * 110.99603 * 204.99889 * 17 14 13 19 19 C 1.50704 * 109.46763 * 179.97438 * 18 17 14 20 20 O 1.21285 * 120.00005 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99571 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99306 * 179.97438 * 21 19 18 23 23 H 1.07993 * 120.00350 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99477 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00262 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00022 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47067 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47172 * 119.99711 * 26 24 22 29 29 H 1.48497 * 109.47512 * 239.99997 * 26 24 22 30 30 H 1.09004 * 109.46844 * 299.99832 * 1 2 3 31 31 H 1.09000 * 109.46664 * 59.99900 * 1 2 3 32 32 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46844 * 240.00168 * 2 1 3 34 34 H 1.08999 * 109.47405 * 120.00114 * 2 1 3 35 35 H 1.08996 * 109.46967 * 59.99875 * 3 2 1 36 36 H 1.08999 * 109.46935 * 300.00402 * 3 2 1 37 37 H 1.07992 * 119.92421 * 0.02793 * 5 4 3 38 38 H 1.08007 * 119.84891 * 179.97438 * 6 5 4 39 39 H 1.08004 * 119.92410 * 179.97438 * 7 6 5 40 40 H 1.07997 * 120.07509 * 179.97438 * 8 7 6 41 41 H 0.97001 * 119.99753 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47363 * 300.00183 * 13 12 10 43 43 H 1.09002 * 109.47213 * 60.00030 * 13 12 10 44 44 H 1.09003 * 109.46709 * 179.97438 * 16 14 13 45 45 H 1.08992 * 109.47651 * 300.00174 * 16 14 13 46 46 H 1.09005 * 109.46909 * 60.00842 * 16 14 13 47 47 H 1.00896 * 110.99680 * 81.04313 * 17 14 13 48 48 H 1.08998 * 109.47687 * 299.99830 * 18 17 14 49 49 H 1.09003 * 109.47036 * 60.00069 * 18 17 14 50 50 H 0.96995 * 119.99970 * 0.02562 * 21 19 18 51 51 H 0.97004 * 120.00705 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2381 1.6209 -1.1815 6 6 5.6214 1.6207 -1.1838 7 6 6.3214 1.4412 -0.0036 8 6 5.6428 1.2607 1.1836 9 6 4.2468 1.2676 1.1941 10 6 3.5130 1.0823 2.4641 11 8 2.3015 0.9832 2.4571 12 7 4.1872 1.0234 3.6296 13 6 3.4600 0.8404 4.8881 14 6 4.4534 0.8086 6.0513 15 1 5.0939 -0.0684 5.9581 16 6 3.6877 0.7429 7.3743 17 7 5.2792 2.0233 6.0233 18 6 6.5703 1.7974 6.6867 19 6 7.3882 3.0623 6.6377 20 8 6.9399 4.0540 6.1024 21 7 8.6182 3.0910 7.1878 22 6 9.3625 4.2415 7.1427 23 1 8.9630 5.1248 6.6669 24 6 10.6304 4.2713 7.7104 25 7 11.1163 3.1967 8.2899 26 14 11.6443 5.8391 7.6497 27 1 10.8762 6.8984 6.9475 28 1 11.9501 6.2846 9.0329 29 1 12.9121 5.5808 6.9211 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6768 1.9563 0.8899 36 1 1.6767 1.9563 -0.8899 37 1 3.6978 1.7612 -2.1060 38 1 6.1575 1.7604 -2.1109 39 1 7.4014 1.4416 -0.0123 40 1 6.1902 1.1203 2.1039 41 1 5.1540 1.1029 3.6352 42 1 2.7631 1.6666 5.0285 43 1 2.9079 -0.0989 4.8554 44 1 4.3956 0.7197 8.2029 45 1 3.0473 1.6198 7.4674 46 1 3.0750 -0.1585 7.3951 47 1 4.7906 2.8022 6.4386 48 1 6.4005 1.5141 7.7254 49 1 7.1067 0.9982 6.1751 50 1 8.9772 2.2975 7.6149 51 1 12.0016 3.2173 8.6858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690600615.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:24 Heat of formation + Delta-G solvation = -81.572324 kcal Electronic energy + Delta-G solvation = -30181.934665 eV Core-core repulsion = 26079.550643 eV Total energy + Delta-G solvation = -4102.384021 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.41755 -40.21945 -39.34509 -38.07213 -36.17969 -35.89893 -34.81240 -33.27711 -32.52267 -31.97575 -31.47621 -27.96532 -27.82062 -26.89096 -25.66538 -24.42432 -23.07874 -22.10289 -21.76926 -21.20607 -21.06541 -19.91281 -18.73954 -17.77137 -17.25135 -16.94715 -16.58720 -16.56419 -16.36815 -16.23674 -15.92486 -15.83293 -15.48985 -15.16794 -14.95012 -14.69767 -14.46530 -14.26566 -14.21703 -13.71813 -13.63428 -13.45255 -13.40895 -13.24637 -13.08625 -12.95553 -12.86801 -12.75455 -12.51297 -12.44500 -12.38831 -12.12087 -12.01058 -11.90643 -11.73245 -11.50541 -11.45076 -10.56707 -10.33310 -10.07369 -10.00040 -9.82164 -9.61075 -9.34627 -8.46315 -5.94357 -0.07145 0.41868 1.36335 1.42086 1.55586 1.94368 2.07390 2.27413 2.30434 2.89548 2.91252 3.21470 3.52736 3.78839 3.80769 3.83114 3.91743 4.11171 4.13362 4.26156 4.31647 4.32685 4.35223 4.47170 4.49254 4.51566 4.57926 4.61183 4.66514 4.76260 4.79465 4.88837 4.92418 4.98358 5.00261 5.05305 5.06553 5.24368 5.26994 5.35291 5.40069 5.42068 5.43328 5.52653 5.62565 5.69680 5.89491 5.98903 6.10401 6.35701 6.61307 6.63279 7.14249 7.29139 7.58372 8.13933 8.71105 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.002333 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.484308 B =11998.349262 C =13795.938833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C -0.081 4.081 4 C -0.038 4.038 5 C -0.134 4.134 6 C -0.089 4.089 7 C -0.141 4.141 8 C -0.090 4.090 9 C -0.158 4.158 10 C 0.547 3.453 11 O -0.559 6.559 12 N -0.706 5.706 13 C 0.138 3.862 14 C 0.076 3.924 15 H 0.099 0.901 16 C -0.176 4.176 17 N -0.675 5.675 18 C 0.066 3.934 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.330 4.330 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.275 1.275 28 H -0.272 1.272 29 H -0.271 1.271 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.409 0.591 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.082 0.918 47 H 0.345 0.655 48 H 0.068 0.932 49 H 0.109 0.891 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.783 -11.140 -14.054 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C -0.118 4.118 4 C -0.040 4.040 5 C -0.152 4.152 6 C -0.107 4.107 7 C -0.159 4.159 8 C -0.109 4.109 9 C -0.161 4.161 10 C 0.336 3.664 11 O -0.441 6.441 12 N -0.357 5.357 13 C 0.014 3.986 14 C -0.034 4.034 15 H 0.118 0.882 16 C -0.235 4.235 17 N -0.307 5.307 18 C -0.066 4.066 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.460 4.460 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.200 1.200 28 H -0.197 1.197 29 H -0.196 1.196 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.163 0.837 40 H 0.148 0.852 41 H 0.246 0.754 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.164 0.836 48 H 0.086 0.914 49 H 0.127 0.873 50 H 0.230 0.770 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.502 -10.716 -14.893 23.387 hybrid contribution 1.124 0.576 1.589 2.030 sum -13.378 -10.140 -13.304 21.420 Atomic orbital electron populations 1.21678 0.95085 1.01671 1.01561 1.21284 0.96300 0.95365 1.00898 1.20769 0.89700 0.98521 1.02841 1.20241 0.96763 0.94898 0.92050 1.21342 0.94747 1.01366 0.97710 1.21718 0.94203 0.95624 0.99133 1.21423 1.01395 1.00739 0.92297 1.21516 0.92735 0.97014 0.99598 1.19899 0.94164 1.08502 0.93489 1.18533 0.87023 0.76517 0.84367 1.90689 1.14289 1.51554 1.87521 1.45788 1.11624 1.72606 1.05653 1.21353 0.93911 1.01407 0.81965 1.21874 0.94242 0.93272 0.94007 0.88245 1.22375 1.01055 1.03507 0.96542 1.60153 1.03828 1.06650 1.60051 1.21578 0.90968 0.94796 0.99301 1.20926 0.82984 0.91103 0.82409 1.90511 1.72330 1.38444 1.49653 1.41935 1.14385 1.13505 1.51295 1.19653 0.98036 0.92075 1.36211 0.90505 1.25987 0.97805 1.01579 0.95885 1.69665 1.19094 1.29482 1.37817 0.84916 0.77867 0.77602 0.78239 1.19951 1.19735 1.19593 0.93838 0.91854 0.92374 0.92116 0.93482 0.90795 0.90493 0.83239 0.82738 0.83713 0.85218 0.75409 0.92884 0.90242 0.91925 0.92388 0.89940 0.83609 0.91429 0.87337 0.76959 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.91 71.98 0.71 -1.92 16 2 C -0.10 -2.15 5.44 30.59 0.17 -1.98 16 3 C -0.08 -1.83 4.61 29.85 0.14 -1.69 16 4 C -0.04 -0.89 5.17 -19.61 -0.10 -1.00 16 5 C -0.13 -2.43 9.66 22.23 0.21 -2.22 16 6 C -0.09 -1.47 10.04 22.33 0.22 -1.25 16 7 C -0.14 -2.71 10.03 22.23 0.22 -2.49 16 8 C -0.09 -2.07 9.53 22.53 0.21 -1.85 16 9 C -0.16 -4.06 5.87 -20.09 -0.12 -4.18 16 10 C 0.55 15.40 7.64 86.78 0.66 16.06 16 11 O -0.56 -17.65 11.59 -3.91 -0.05 -17.69 16 12 N -0.71 -17.65 5.34 -465.97 -2.49 -20.13 16 13 C 0.14 3.07 5.37 86.38 0.46 3.53 16 14 C 0.08 1.52 2.75 44.91 0.12 1.64 16 15 H 0.10 1.73 7.80 -2.39 -0.02 1.71 16 16 C -0.18 -2.97 9.16 71.98 0.66 -2.31 16 17 N -0.67 -18.76 5.31 -495.56 -2.63 -21.40 16 18 C 0.07 2.01 5.96 85.56 0.51 2.52 16 19 C 0.44 19.74 7.82 87.66 0.69 20.43 16 20 O -0.62 -33.39 15.78 -3.04 -0.05 -33.44 16 21 N -0.57 -28.33 5.29 -306.99 -1.62 -29.95 16 22 C -0.33 -18.36 9.68 84.04 0.81 -17.55 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.58 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 25 N -0.92 -48.61 13.05 21.66 0.28 -48.32 16 26 Si 0.99 42.41 29.55 68.60 2.03 44.43 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.23 6.57 -2.39 -0.02 1.21 16 35 H 0.07 2.07 5.96 -2.39 -0.01 2.05 16 36 H 0.08 1.40 8.02 -2.39 -0.02 1.38 16 37 H 0.15 1.91 8.04 -2.91 -0.02 1.89 16 38 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.13 2.80 6.45 -2.91 -0.02 2.78 16 41 H 0.41 9.99 6.21 -92.71 -0.58 9.41 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.06 1.08 7.45 -2.39 -0.02 1.06 16 45 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 46 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.34 10.72 8.17 -89.70 -0.73 9.99 16 48 H 0.07 1.80 7.44 -2.39 -0.02 1.79 16 49 H 0.11 2.86 8.06 -2.39 -0.02 2.84 16 50 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16 51 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -69.47 416.14 0.46 -69.01 By element: Atomic # 1 Polarization: 53.02 SS G_CDS: -1.08 Total: 51.94 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 6.06 Total: 5.55 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -6.46 Total: -119.80 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.09 Total: -51.13 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.47 0.46 -69.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690600615.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.558 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds