Wall clock time and date at job start Wed Apr 1 2020 04:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 C 1.50704 * 109.46709 * 180.02562 * 3 2 1 5 5 C 1.38023 * 119.51175 * 125.24166 * 4 3 2 6 6 C 1.39928 * 119.12672 * 180.27061 * 5 4 3 7 7 C 1.48159 * 120.88767 * 179.77143 * 6 5 4 8 8 O 1.21511 * 120.00464 * 359.72040 * 7 6 5 9 9 N 1.34777 * 120.00078 * 179.71753 * 7 6 5 10 10 C 1.46500 * 120.00376 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47473 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88678 * 302.57039 * 12 11 10 14 14 C 1.55161 * 111.00123 * 178.65022 * 12 11 10 15 15 C 1.54319 * 102.94121 * 206.42147 * 14 12 11 16 16 N 1.47022 * 107.27361 * 22.18955 * 15 14 12 17 17 C 1.36943 * 125.65157 * 181.02014 * 16 15 14 18 18 H 1.07998 * 119.99476 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99659 * 0.04966 * 17 16 15 20 20 N 1.31617 * 120.00033 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99467 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47337 * 60.00180 * 21 19 17 23 23 H 1.48504 * 109.46706 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47146 * 299.99897 * 21 19 17 25 25 C 1.47426 * 108.69915 * 1.06369 * 16 15 14 26 26 C 1.39605 * 118.21847 * 359.49497 * 6 5 4 27 27 C 1.38846 * 118.95026 * 0.25538 * 26 6 5 28 28 O 1.35693 * 119.62357 * 180.02562 * 27 26 6 29 29 N 1.31876 * 119.50913 * 304.99492 * 4 3 2 30 30 H 1.08998 * 109.47144 * 60.00349 * 1 2 3 31 31 H 1.09001 * 109.46714 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47208 * 299.99779 * 1 2 3 33 33 H 1.09010 * 109.46921 * 240.00014 * 2 1 3 34 34 H 1.08994 * 109.47158 * 120.00412 * 2 1 3 35 35 H 1.08997 * 109.46967 * 60.00074 * 3 2 1 36 36 H 1.08998 * 109.46895 * 299.99804 * 3 2 1 37 37 H 1.07997 * 120.43711 * 0.04339 * 5 4 3 38 38 H 0.97004 * 120.00228 * 359.97438 * 9 7 6 39 39 H 1.09002 * 109.47129 * 59.99747 * 10 9 7 40 40 H 1.08998 * 109.46845 * 300.00553 * 10 9 7 41 41 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 42 42 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 43 43 H 1.08992 * 110.72334 * 324.78646 * 14 12 11 44 44 H 1.09006 * 110.71816 * 88.05886 * 14 12 11 45 45 H 1.09004 * 109.88456 * 262.77407 * 15 14 12 46 46 H 1.08999 * 110.01467 * 141.68366 * 15 14 12 47 47 H 0.97008 * 119.99258 * 179.97438 * 20 19 17 48 48 H 1.09006 * 110.36588 * 217.02820 * 25 16 15 49 49 H 1.09000 * 110.46273 * 94.75723 * 25 16 15 50 50 H 1.08005 * 120.52664 * 180.27059 * 26 6 5 51 51 H 0.96698 * 113.99680 * 89.99674 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2266 2.1356 -0.9818 6 6 5.6258 2.1254 -0.9781 7 6 6.3945 2.8519 -2.0156 8 8 5.8102 3.4633 -2.8881 9 7 7.7419 2.8348 -1.9916 10 6 8.5021 3.5536 -3.0171 11 6 9.9998 3.3735 -2.7619 12 6 10.7936 4.1248 -3.8326 13 1 10.5261 3.7768 -4.8303 14 6 12.3201 3.9936 -3.5876 15 6 12.8868 5.2687 -4.2466 16 7 11.7932 6.2492 -4.3120 17 6 11.8795 7.5067 -4.8474 18 1 11.0152 8.1542 -4.8470 19 6 13.0778 7.9486 -5.3911 20 7 14.1311 7.1594 -5.3915 21 14 13.1953 9.6637 -6.1222 22 1 12.8831 10.6702 -5.0760 23 1 14.5714 9.8910 -6.6322 24 1 12.2253 9.7932 -7.2389 25 6 10.5885 5.6548 -3.7046 26 6 6.2781 1.4172 0.0329 27 6 5.5179 0.7512 0.9848 28 8 6.1377 0.0590 1.9738 29 7 4.1970 0.7841 0.9392 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.6855 2.6758 -1.7446 38 1 8.2085 2.3471 -1.2949 39 1 8.2515 4.6137 -2.9789 40 1 8.2511 3.1563 -4.0006 41 1 10.2501 2.3133 -2.8005 42 1 10.2511 3.7706 -1.7783 43 1 12.5397 3.9809 -2.5201 44 1 12.7134 3.1008 -4.0739 45 1 13.2407 5.0406 -5.2520 46 1 13.7057 5.6662 -3.6469 47 1 14.9684 7.4683 -5.7718 48 1 9.6967 5.9649 -4.2493 49 1 10.5100 5.9406 -2.6557 50 1 7.3569 1.3881 0.0739 51 1 6.3175 0.5822 2.7669 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691913199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:46 Heat of formation + Delta-G solvation = -35.131344 kcal Electronic energy + Delta-G solvation = -29201.921941 eV Core-core repulsion = 25101.551751 eV Total energy + Delta-G solvation = -4100.370189 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28300 -39.66906 -37.91414 -37.72539 -35.42871 -35.31914 -33.36682 -32.74936 -31.16709 -30.74522 -29.02405 -27.40449 -26.86713 -25.21884 -24.21011 -23.36405 -22.43305 -21.86973 -20.71227 -20.00331 -19.62594 -19.04755 -17.57068 -17.43539 -16.82953 -16.15912 -16.12553 -15.77143 -15.56906 -15.25727 -15.05454 -14.79888 -14.56039 -14.16924 -14.02028 -13.80221 -13.63522 -13.17387 -12.81511 -12.54955 -12.44558 -12.31200 -12.22023 -12.01501 -11.88193 -11.84087 -11.59400 -11.58865 -11.13734 -11.10894 -10.88170 -10.75518 -10.58588 -10.33388 -10.16267 -10.02856 -9.94283 -9.82892 -9.75606 -9.61250 -9.31609 -9.28058 -8.57669 -6.80441 -5.69041 -3.02221 0.22306 0.46290 2.46331 2.74859 3.01756 3.31165 3.42104 3.46174 3.47442 3.91795 4.13314 4.42220 4.46074 4.51950 4.61573 4.63761 4.70069 4.84941 4.91035 5.04134 5.08979 5.16087 5.23460 5.30863 5.34339 5.41665 5.48222 5.53520 5.59092 5.62877 5.64541 5.71541 5.80073 5.82403 5.90549 5.95722 5.98267 6.04658 6.16633 6.24585 6.36954 6.54555 6.58371 6.72514 6.95929 6.96247 7.16232 7.39427 7.58390 7.64870 7.84560 7.85018 8.28914 9.24871 9.85397 10.51643 11.42658 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.001618 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.051104 B =17297.097502 C =18171.148573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.071 4.071 4 C 0.154 3.846 5 C -0.124 4.124 6 C -0.065 4.065 7 C 0.554 3.446 8 O -0.523 6.523 9 N -0.718 5.718 10 C 0.116 3.884 11 C -0.117 4.117 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.138 4.138 15 C 0.176 3.824 16 N -0.606 5.606 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.923 5.923 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.140 3.860 26 C -0.163 4.163 27 C 0.314 3.686 28 O -0.479 6.479 29 N -0.486 5.486 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.400 0.600 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.041 0.959 47 H 0.252 0.748 48 H 0.037 0.963 49 H 0.017 0.983 50 H 0.146 0.854 51 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.060 -16.609 14.959 30.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.109 4.109 4 C 0.016 3.984 5 C -0.145 4.145 6 C -0.075 4.075 7 C 0.340 3.660 8 O -0.399 6.399 9 N -0.370 5.370 10 C -0.006 4.006 11 C -0.155 4.155 12 C -0.121 4.121 13 H 0.095 0.905 14 C -0.176 4.176 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.013 3.987 26 C -0.185 4.185 27 C 0.135 3.865 28 O -0.286 6.286 29 N -0.206 5.206 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.235 0.765 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.034 0.966 50 H 0.163 0.837 51 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -21.700 -16.924 14.458 31.086 hybrid contribution 1.107 1.395 -0.241 1.797 sum -20.593 -15.530 14.217 29.451 Atomic orbital electron populations 1.21783 0.95407 1.01896 1.01912 1.21452 0.95767 0.95316 1.02993 1.20671 0.87431 0.98907 1.03849 1.21017 0.96811 0.91407 0.89164 1.22170 0.93212 0.99518 0.99594 1.20330 0.94448 0.97508 0.95259 1.18083 0.82417 0.80882 0.84654 1.90817 1.69574 1.42818 1.36740 1.46003 1.05757 1.53467 1.31756 1.21604 0.90882 0.97411 0.90744 1.21757 0.92470 1.00875 1.00392 1.22273 0.95433 0.96681 0.97682 0.90522 1.22898 0.94379 1.00152 1.00203 1.21139 0.90122 0.84924 0.98651 1.44475 1.06289 1.13250 1.69257 1.19034 0.96397 0.89046 1.31209 0.90531 1.24797 0.95890 0.98449 1.01372 1.69963 1.01216 1.35299 1.50598 0.86201 0.76716 0.83862 0.79003 1.21212 1.21597 1.21166 1.21604 0.91149 0.90096 0.95815 1.22288 1.01802 0.98023 0.96343 1.18937 0.86699 0.90570 0.90299 1.84813 1.76887 1.39366 1.27558 1.66788 1.09902 1.18036 1.25850 0.92610 0.92555 0.92569 0.92068 0.90790 0.89471 0.89619 0.82934 0.76515 0.90448 0.90985 0.91546 0.91219 0.92572 0.92319 0.93703 0.94063 0.93774 0.94458 0.96565 0.83664 0.73918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.74 5.79 -26.73 -0.15 -0.89 16 3 C -0.07 -0.44 5.61 -27.88 -0.16 -0.59 16 4 C 0.15 1.31 6.17 -82.65 -0.51 0.80 16 5 C -0.12 -1.14 9.27 -39.03 -0.36 -1.50 16 6 C -0.06 -0.62 5.91 -104.68 -0.62 -1.24 16 7 C 0.55 6.53 7.80 -12.19 -0.10 6.43 16 8 O -0.52 -8.09 16.44 5.36 0.09 -8.00 16 9 N -0.72 -7.16 5.51 -61.15 -0.34 -7.49 16 10 C 0.12 1.38 5.52 -4.04 -0.02 1.36 16 11 C -0.12 -1.36 4.84 -26.73 -0.13 -1.49 16 12 C -0.10 -1.63 3.07 -88.47 -0.27 -1.90 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 14 C -0.14 -2.46 6.42 -24.90 -0.16 -2.62 16 15 C 0.18 4.27 5.38 -3.07 -0.02 4.25 16 16 N -0.61 -15.59 3.39 -170.08 -0.58 -16.17 16 17 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -27.34 10.31 55.49 0.57 -26.77 16 21 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.14 2.83 5.89 -2.53 -0.01 2.81 16 26 C -0.16 -1.28 9.55 -38.85 -0.37 -1.65 16 27 C 0.31 2.71 7.74 -17.17 -0.13 2.58 16 28 O -0.48 -3.40 13.56 -18.78 -0.25 -3.65 16 29 N -0.49 -4.64 9.87 -9.59 -0.09 -4.73 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 34 H 0.07 0.55 7.94 -51.93 -0.41 0.14 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.41 7.86 -51.93 -0.41 0.01 16 37 H 0.15 1.32 7.62 -52.49 -0.40 0.92 16 38 H 0.40 2.81 6.61 -40.82 -0.27 2.54 16 39 H 0.08 1.06 7.46 -51.93 -0.39 0.67 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 43 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 46 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 49 H 0.02 0.33 8.00 -51.93 -0.42 -0.08 16 50 H 0.15 0.78 6.53 -52.48 -0.34 0.43 16 51 H 0.40 0.87 9.06 45.56 0.41 1.28 16 LS Contribution 414.19 15.07 6.24 6.24 Total: -1.00 -35.19 414.19 -9.89 -45.08 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.60 Total: -0.82 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.90 Total: -1.00 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.44 Total: -55.16 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.17 Total: -11.66 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.19 -9.89 -45.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691913199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.949 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds