Wall clock time and date at job start Wed Apr 1 2020 04:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 C 1.50704 * 109.46709 * 180.02562 * 3 2 1 5 5 C 1.38023 * 119.51175 * 125.24166 * 4 3 2 6 6 C 1.39928 * 119.12672 * 180.27061 * 5 4 3 7 7 C 1.48159 * 120.88767 * 179.77143 * 6 5 4 8 8 O 1.21511 * 120.00464 * 359.72040 * 7 6 5 9 9 N 1.34777 * 120.00078 * 179.71753 * 7 6 5 10 10 C 1.46500 * 120.00376 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47473 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88678 * 302.57039 * 12 11 10 14 14 C 1.55161 * 111.00123 * 178.65022 * 12 11 10 15 15 C 1.54319 * 102.94121 * 206.42147 * 14 12 11 16 16 N 1.47022 * 107.27361 * 22.18955 * 15 14 12 17 17 C 1.36943 * 125.65157 * 181.02014 * 16 15 14 18 18 H 1.07998 * 119.99476 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99659 * 0.04966 * 17 16 15 20 20 N 1.31617 * 120.00033 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99467 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47337 * 60.00180 * 21 19 17 23 23 H 1.48504 * 109.46706 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47146 * 299.99897 * 21 19 17 25 25 C 1.47426 * 108.69915 * 1.06369 * 16 15 14 26 26 C 1.39605 * 118.21847 * 359.49497 * 6 5 4 27 27 C 1.38846 * 118.95026 * 0.25538 * 26 6 5 28 28 O 1.35693 * 119.62357 * 180.02562 * 27 26 6 29 29 N 1.31876 * 119.50913 * 304.99492 * 4 3 2 30 30 H 1.08998 * 109.47144 * 60.00349 * 1 2 3 31 31 H 1.09001 * 109.46714 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47208 * 299.99779 * 1 2 3 33 33 H 1.09010 * 109.46921 * 240.00014 * 2 1 3 34 34 H 1.08994 * 109.47158 * 120.00412 * 2 1 3 35 35 H 1.08997 * 109.46967 * 60.00074 * 3 2 1 36 36 H 1.08998 * 109.46895 * 299.99804 * 3 2 1 37 37 H 1.07997 * 120.43711 * 0.04339 * 5 4 3 38 38 H 0.97004 * 120.00228 * 359.97438 * 9 7 6 39 39 H 1.09002 * 109.47129 * 59.99747 * 10 9 7 40 40 H 1.08998 * 109.46845 * 300.00553 * 10 9 7 41 41 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 42 42 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 43 43 H 1.08992 * 110.72334 * 324.78646 * 14 12 11 44 44 H 1.09006 * 110.71816 * 88.05886 * 14 12 11 45 45 H 1.09004 * 109.88456 * 262.77407 * 15 14 12 46 46 H 1.08999 * 110.01467 * 141.68366 * 15 14 12 47 47 H 0.97008 * 119.99258 * 179.97438 * 20 19 17 48 48 H 1.09006 * 110.36588 * 217.02820 * 25 16 15 49 49 H 1.09000 * 110.46273 * 94.75723 * 25 16 15 50 50 H 1.08005 * 120.52664 * 180.27059 * 26 6 5 51 51 H 0.96698 * 113.99680 * 89.99674 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2266 2.1356 -0.9818 6 6 5.6258 2.1254 -0.9781 7 6 6.3945 2.8519 -2.0156 8 8 5.8102 3.4633 -2.8881 9 7 7.7419 2.8348 -1.9916 10 6 8.5021 3.5536 -3.0171 11 6 9.9998 3.3735 -2.7619 12 6 10.7936 4.1248 -3.8326 13 1 10.5261 3.7768 -4.8303 14 6 12.3201 3.9936 -3.5876 15 6 12.8868 5.2687 -4.2466 16 7 11.7932 6.2492 -4.3120 17 6 11.8795 7.5067 -4.8474 18 1 11.0152 8.1542 -4.8470 19 6 13.0778 7.9486 -5.3911 20 7 14.1311 7.1594 -5.3915 21 14 13.1953 9.6637 -6.1222 22 1 12.8831 10.6702 -5.0760 23 1 14.5714 9.8910 -6.6322 24 1 12.2253 9.7932 -7.2389 25 6 10.5885 5.6548 -3.7046 26 6 6.2781 1.4172 0.0329 27 6 5.5179 0.7512 0.9848 28 8 6.1377 0.0590 1.9738 29 7 4.1970 0.7841 0.9392 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.6855 2.6758 -1.7446 38 1 8.2085 2.3471 -1.2949 39 1 8.2515 4.6137 -2.9789 40 1 8.2511 3.1563 -4.0006 41 1 10.2501 2.3133 -2.8005 42 1 10.2511 3.7706 -1.7783 43 1 12.5397 3.9809 -2.5201 44 1 12.7134 3.1008 -4.0739 45 1 13.2407 5.0406 -5.2520 46 1 13.7057 5.6662 -3.6469 47 1 14.9684 7.4683 -5.7718 48 1 9.6967 5.9649 -4.2493 49 1 10.5100 5.9406 -2.6557 50 1 7.3569 1.3881 0.0739 51 1 6.3175 0.5822 2.7669 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691913199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:45 Heat of formation + Delta-G solvation = -61.300018 kcal Electronic energy + Delta-G solvation = -29203.056700 eV Core-core repulsion = 25101.551751 eV Total energy + Delta-G solvation = -4101.504948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.96777 -40.54395 -39.39272 -38.33645 -36.57472 -35.87511 -34.81982 -33.74565 -32.40007 -31.64520 -30.68886 -28.30772 -27.92183 -26.77585 -25.39032 -23.96811 -23.56118 -22.52193 -21.81947 -21.55808 -20.80833 -19.78456 -18.87303 -18.28398 -18.06790 -17.07788 -16.78781 -16.74195 -16.67684 -16.32744 -16.24505 -15.76778 -15.56466 -15.44414 -15.09733 -14.78587 -14.59206 -14.11617 -13.86734 -13.70193 -13.66961 -13.39914 -13.26414 -13.08151 -12.98526 -12.78912 -12.73149 -12.65400 -12.38697 -12.25111 -12.05051 -12.04082 -11.79389 -11.69478 -11.58116 -11.39594 -11.33251 -11.29655 -11.04774 -10.69704 -10.52627 -10.20034 -9.91467 -8.88128 -7.85197 -5.20221 -0.48215 -0.14312 1.44123 1.47471 1.53820 1.66825 1.90243 2.43495 2.49344 2.64955 3.31451 3.32699 3.44777 3.65770 3.79653 3.83344 3.85916 3.98779 4.06753 4.14823 4.16701 4.21335 4.32208 4.36473 4.37620 4.56240 4.61362 4.67397 4.70983 4.76519 4.79767 4.87131 4.89914 4.94247 4.99449 5.00689 5.12051 5.16168 5.20177 5.26093 5.31385 5.33916 5.40836 5.44985 5.48437 5.53736 5.71814 5.80380 6.21477 6.36385 6.55721 6.81624 7.01748 7.11499 7.79915 8.43812 9.24779 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.001618 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.051104 B =17297.097502 C =18171.148573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.070 4.070 4 C 0.151 3.849 5 C -0.133 4.133 6 C -0.075 4.075 7 C 0.555 3.445 8 O -0.568 6.568 9 N -0.703 5.703 10 C 0.121 3.879 11 C -0.100 4.100 12 C -0.086 4.086 13 H 0.073 0.927 14 C -0.122 4.122 15 C 0.180 3.820 16 N -0.631 5.631 17 C -0.246 4.246 18 H 0.079 0.921 19 C -0.067 4.067 20 N -0.951 5.951 21 Si 0.978 3.022 22 H -0.277 1.277 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.133 3.867 26 C -0.152 4.152 27 C 0.310 3.690 28 O -0.485 6.485 29 N -0.503 5.503 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.152 0.848 38 H 0.417 0.583 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.006 0.994 46 H 0.004 0.996 47 H 0.246 0.754 48 H 0.032 0.968 49 H 0.025 0.975 50 H 0.173 0.827 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.989 -17.876 16.517 32.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.108 4.108 4 C 0.014 3.986 5 C -0.154 4.154 6 C -0.086 4.086 7 C 0.341 3.659 8 O -0.448 6.448 9 N -0.355 5.355 10 C -0.002 4.002 11 C -0.138 4.138 12 C -0.106 4.106 13 H 0.091 0.909 14 C -0.160 4.160 15 C 0.055 3.945 16 N -0.357 5.357 17 C -0.375 4.375 18 H 0.097 0.903 19 C -0.260 4.260 20 N -0.600 5.600 21 Si 0.806 3.194 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.008 3.992 26 C -0.174 4.174 27 C 0.131 3.869 28 O -0.296 6.296 29 N -0.224 5.224 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.169 0.831 38 H 0.256 0.744 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.024 0.976 46 H 0.022 0.978 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.043 0.957 50 H 0.191 0.809 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -22.638 -18.218 16.077 33.209 hybrid contribution 1.377 1.772 -0.663 2.340 sum -21.261 -16.446 15.414 30.985 Atomic orbital electron populations 1.21762 0.94275 1.02193 1.02483 1.21395 0.96703 0.95134 1.01909 1.20755 0.86123 0.99030 1.04885 1.21281 0.97758 0.90924 0.88680 1.22258 0.93386 0.99867 0.99906 1.20196 0.94508 0.98382 0.95502 1.18380 0.82786 0.80271 0.84415 1.90796 1.70478 1.44862 1.38615 1.45791 1.05216 1.52862 1.31609 1.21398 0.91362 0.96443 0.91028 1.21606 0.91056 1.02075 0.99072 1.22153 0.95007 0.94023 0.99370 0.90903 1.22758 0.94930 0.97312 1.00988 1.20955 0.89525 0.87524 0.96527 1.44830 1.08543 1.13004 1.69361 1.19438 0.96540 0.90538 1.31014 0.90346 1.25649 0.95697 1.02308 1.02328 1.70195 1.01388 1.36868 1.51524 0.85168 0.76438 0.79488 0.78349 1.20318 1.21832 1.20404 1.21834 0.88979 0.92890 0.95495 1.22455 1.03066 0.96786 0.95059 1.19108 0.86595 0.90379 0.90816 1.84771 1.76581 1.39942 1.28304 1.66843 1.10671 1.18520 1.26334 0.91997 0.92423 0.92026 0.92865 0.92120 0.88666 0.88313 0.83062 0.74441 0.92506 0.91784 0.88309 0.89804 0.90441 0.89972 0.97557 0.97820 0.94452 0.94923 0.95699 0.80926 0.71504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.58 16 2 C -0.11 -1.34 5.79 30.60 0.18 -1.16 16 3 C -0.07 -0.80 5.61 29.85 0.17 -0.63 16 4 C 0.15 2.44 6.17 42.50 0.26 2.70 16 5 C -0.13 -2.35 9.27 22.63 0.21 -2.14 16 6 C -0.08 -1.34 5.91 -19.90 -0.12 -1.45 16 7 C 0.55 12.36 7.80 86.88 0.68 13.03 16 8 O -0.57 -17.54 16.44 -3.75 -0.06 -17.60 16 9 N -0.70 -12.16 5.51 -465.68 -2.57 -14.73 16 10 C 0.12 2.62 5.52 86.38 0.48 3.10 16 11 C -0.10 -1.95 4.84 30.59 0.15 -1.81 16 12 C -0.09 -2.59 3.07 -9.40 -0.03 -2.62 16 13 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 14 C -0.12 -4.08 6.42 31.78 0.20 -3.88 16 15 C 0.18 8.89 5.38 86.73 0.47 9.35 16 16 N -0.63 -32.98 3.39 -692.00 -2.35 -35.33 16 17 C -0.25 -14.21 10.28 84.03 0.86 -13.35 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 20 N -0.95 -58.24 10.31 21.65 0.22 -58.01 16 21 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 C 0.13 5.30 5.89 86.85 0.51 5.81 16 26 C -0.15 -2.00 9.55 22.75 0.22 -1.79 16 27 C 0.31 4.72 7.74 84.78 0.66 5.37 16 28 O -0.49 -5.68 13.56 -90.12 -1.22 -6.90 16 29 N -0.50 -8.96 9.87 -297.14 -2.93 -11.89 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.06 0.87 7.94 -2.39 -0.02 0.86 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 0.85 7.86 -2.39 -0.02 0.83 16 37 H 0.15 2.62 7.62 -2.91 -0.02 2.60 16 38 H 0.42 4.20 6.61 -92.71 -0.61 3.59 16 39 H 0.06 1.49 7.46 -2.39 -0.02 1.47 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 43 H 0.08 2.30 8.04 -2.39 -0.02 2.28 16 44 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 45 H 0.01 0.35 7.38 -2.38 -0.02 0.33 16 46 H 0.00 0.20 7.50 -2.39 -0.02 0.18 16 47 H 0.25 14.68 8.31 -92.70 -0.77 13.90 16 48 H 0.03 1.32 8.07 -2.38 -0.02 1.30 16 49 H 0.03 0.97 8.00 -2.39 -0.02 0.95 16 50 H 0.17 1.16 6.53 -2.91 -0.02 1.14 16 51 H 0.42 0.71 9.06 -74.06 -0.67 0.04 16 Total: -1.00 -79.72 414.19 -1.15 -80.88 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -0.34 Total: 8.32 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.07 Total: 6.53 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -7.63 Total: -119.96 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.28 Total: -24.50 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -79.72 -1.15 -80.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691913199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.575 kcal (2) G-P(sol) polarization free energy of solvation -79.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds