Wall clock time and date at job start Wed Apr 1 2020 04:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47347 * 2 1 4 4 C 1.50704 * 109.47133 * 179.97438 * 3 2 1 5 5 C 1.38020 * 119.50541 * 125.00322 * 4 3 2 6 6 C 1.39930 * 119.12973 * 180.02562 * 5 4 3 7 7 C 1.48157 * 120.89574 * 179.97438 * 6 5 4 8 8 O 1.21518 * 119.99702 * 0.02605 * 7 6 5 9 9 N 1.34776 * 120.00494 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00443 * 180.02562 * 9 7 6 11 11 C 1.52989 * 109.47292 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47415 * 179.97438 * 11 10 9 13 13 H 1.09001 * 110.88839 * 54.29669 * 12 11 10 14 14 C 1.55156 * 111.00798 * 178.17972 * 12 11 10 15 15 C 1.54324 * 102.94432 * 153.57601 * 14 12 11 16 16 N 1.47023 * 107.27313 * 337.80978 * 15 14 12 17 17 C 1.36932 * 125.65439 * 178.97572 * 16 15 14 18 18 H 1.07996 * 120.00224 * 179.97438 * 17 16 15 19 19 C 1.38812 * 119.99382 * 359.97257 * 17 16 15 20 20 N 1.31622 * 120.00605 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99817 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47215 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47286 * 120.00106 * 21 19 17 24 24 H 1.48500 * 109.47446 * 239.99727 * 21 19 17 25 25 C 1.47474 * 108.71873 * 358.97090 * 16 15 14 26 26 C 1.39619 * 118.21318 * 359.97438 * 6 5 4 27 27 C 1.38843 * 118.95049 * 359.97438 * 26 6 5 28 28 O 1.35686 * 119.62159 * 180.02562 * 27 26 6 29 29 N 1.31876 * 119.51727 * 305.27525 * 4 3 2 30 30 H 1.09001 * 109.47085 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47264 * 300.00358 * 1 2 3 32 32 H 1.08997 * 109.46924 * 60.00263 * 1 2 3 33 33 H 1.08999 * 109.47671 * 239.99877 * 2 1 3 34 34 H 1.09006 * 109.46999 * 120.00009 * 2 1 3 35 35 H 1.09006 * 109.46676 * 60.00035 * 3 2 1 36 36 H 1.08993 * 109.47298 * 299.99986 * 3 2 1 37 37 H 1.07996 * 120.43970 * 0.02562 * 5 4 3 38 38 H 0.97002 * 119.99353 * 0.02562 * 9 7 6 39 39 H 1.09003 * 109.46896 * 299.99963 * 10 9 7 40 40 H 1.08998 * 109.46729 * 59.99932 * 10 9 7 41 41 H 1.09005 * 109.47715 * 299.99891 * 11 10 9 42 42 H 1.09002 * 109.47819 * 59.99562 * 11 10 9 43 43 H 1.09010 * 110.71866 * 271.93621 * 14 12 11 44 44 H 1.08992 * 110.72170 * 35.03563 * 14 12 11 45 45 H 1.09012 * 109.88186 * 97.22292 * 15 14 12 46 46 H 1.08997 * 109.88424 * 218.23462 * 15 14 12 47 47 H 0.97000 * 120.00236 * 179.97438 * 20 19 17 48 48 H 1.08997 * 110.35329 * 265.25574 * 25 16 15 49 49 H 1.09001 * 110.40336 * 142.92017 * 25 16 15 50 50 H 1.07999 * 120.52231 * 180.02562 * 26 6 5 51 51 H 0.96700 * 114.00082 * 90.00574 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2273 2.1313 -0.9831 6 6 5.6266 2.1256 -0.9753 7 6 6.3961 2.8513 -2.0127 8 8 5.8123 3.4628 -2.8856 9 7 7.7435 2.8333 -1.9883 10 6 8.5044 3.5514 -3.0138 11 6 10.0019 3.3703 -2.7580 12 6 10.7966 4.1197 -3.8293 13 1 10.4914 5.1649 -3.8796 14 6 12.3226 3.9974 -3.5772 15 6 12.9208 4.1633 -4.9901 16 7 11.8641 3.8234 -5.9542 17 6 11.9848 3.8631 -7.3176 18 1 11.1461 3.5927 -7.9421 19 6 13.1851 4.2508 -7.8971 20 7 14.2071 4.5808 -7.1361 21 14 13.3500 4.3043 -9.7570 22 1 12.0674 3.8894 -10.3799 23 1 13.6844 5.6866 -10.1848 24 1 14.4297 3.3790 -10.1851 25 6 10.6525 3.4323 -5.2101 26 6 6.2781 1.4175 0.0364 27 6 5.5172 0.7522 0.9883 28 8 6.1362 0.0604 1.9778 29 7 4.1964 0.7798 0.9379 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6768 1.9563 -0.8899 37 1 3.6868 2.6678 -1.7489 38 1 8.2094 2.3448 -1.2917 39 1 8.2535 3.1539 -3.9973 40 1 8.2545 4.6116 -2.9758 41 1 10.2532 3.7674 -1.7745 42 1 10.2515 2.3100 -2.7962 43 1 12.6692 4.7918 -2.9160 44 1 12.5681 3.0191 -3.1641 45 1 13.2402 5.1950 -5.1387 46 1 13.7697 3.4911 -5.1146 47 1 15.0459 4.8515 -7.5410 48 1 10.6128 2.3494 -5.0924 49 1 9.7597 3.7920 -5.7216 50 1 7.3569 1.3885 0.0783 51 1 6.3158 0.5838 2.7708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691913200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:49 Heat of formation + Delta-G solvation = -35.275694 kcal Electronic energy + Delta-G solvation = -29197.144896 eV Core-core repulsion = 25096.768447 eV Total energy + Delta-G solvation = -4100.376449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.28535 -39.67114 -37.91149 -37.72622 -35.43318 -35.31861 -33.36772 -32.75120 -31.16868 -30.74661 -29.01931 -27.40443 -26.88536 -25.21500 -24.21058 -23.36624 -22.42259 -21.86586 -20.71746 -20.01389 -19.62983 -19.05520 -17.57748 -17.43769 -16.82858 -16.17423 -16.09876 -15.78983 -15.58918 -15.25619 -14.98721 -14.83642 -14.57443 -14.16644 -14.02001 -13.81055 -13.62772 -13.17321 -12.81742 -12.51718 -12.49633 -12.29267 -12.21955 -12.00657 -11.88323 -11.85255 -11.60395 -11.57217 -11.15518 -11.10317 -10.87000 -10.78611 -10.58997 -10.33597 -10.13154 -10.01104 -9.93418 -9.83196 -9.75711 -9.61759 -9.31763 -9.28545 -8.58458 -6.80391 -5.69331 -3.02404 0.22014 0.46096 2.45921 2.74756 3.01315 3.30555 3.41016 3.46768 3.49136 3.91621 4.13145 4.42240 4.45895 4.51809 4.61594 4.63947 4.70244 4.84912 4.90986 5.03524 5.09100 5.16126 5.23302 5.30942 5.34269 5.41915 5.47969 5.53378 5.58432 5.62255 5.65158 5.71906 5.80529 5.82347 5.90823 5.95936 5.98233 6.04096 6.16225 6.24205 6.37578 6.54370 6.58267 6.72465 6.95566 6.96294 7.15828 7.39407 7.58997 7.64743 7.84297 7.85054 8.28459 9.24799 9.85224 10.51390 11.42537 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.001636 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.778241 B =17109.937240 C =18076.796204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.071 4.071 4 C 0.154 3.846 5 C -0.124 4.124 6 C -0.065 4.065 7 C 0.554 3.446 8 O -0.523 6.523 9 N -0.718 5.718 10 C 0.116 3.884 11 C -0.117 4.117 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.138 4.138 15 C 0.177 3.823 16 N -0.607 5.607 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.139 3.861 26 C -0.163 4.163 27 C 0.314 3.686 28 O -0.479 6.479 29 N -0.486 5.486 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.400 0.600 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.045 0.955 46 H 0.041 0.959 47 H 0.251 0.749 48 H 0.017 0.983 49 H 0.037 0.963 50 H 0.146 0.854 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.435 -6.416 21.915 31.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.108 4.108 4 C 0.016 3.984 5 C -0.145 4.145 6 C -0.076 4.076 7 C 0.340 3.660 8 O -0.400 6.400 9 N -0.370 5.370 10 C -0.006 4.006 11 C -0.155 4.155 12 C -0.121 4.121 13 H 0.095 0.905 14 C -0.176 4.176 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.013 3.987 26 C -0.185 4.185 27 C 0.135 3.865 28 O -0.286 6.286 29 N -0.206 5.206 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.235 0.765 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.035 0.965 49 H 0.056 0.944 50 H 0.163 0.837 51 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -22.089 -6.833 21.346 31.469 hybrid contribution 1.159 0.513 -0.834 1.517 sum -20.931 -6.320 20.512 29.980 Atomic orbital electron populations 1.21780 0.95406 1.01912 1.01889 1.21455 0.95768 0.95306 1.03033 1.20671 0.87425 0.98927 1.03816 1.21017 0.96815 0.91356 0.89212 1.22170 0.93204 0.99596 0.99520 1.20332 0.94448 0.97545 0.95227 1.18085 0.82416 0.80899 0.84631 1.90818 1.69611 1.42878 1.36661 1.46000 1.05754 1.53473 1.31749 1.21600 0.90872 0.96974 0.91169 1.21758 0.92447 1.01600 0.99710 1.22272 0.95424 0.99443 0.94922 0.90526 1.22900 0.94388 1.00218 1.00136 1.21130 0.90505 1.00044 0.83123 1.44500 1.08008 1.78912 1.01881 1.19128 0.97386 1.38569 0.80413 0.90411 1.24801 0.96079 1.01740 0.97981 1.69980 1.02645 1.51692 1.32760 0.86051 0.77491 0.77247 0.85035 1.20502 1.21771 1.21795 1.21625 0.91042 0.95748 0.90274 1.22290 1.01803 0.98061 0.96310 1.18929 0.86705 0.90563 0.90304 1.84817 1.76925 1.39333 1.27499 1.66777 1.09922 1.17926 1.25941 0.92541 0.92597 0.92604 0.92031 0.90783 0.89502 0.89616 0.82937 0.76506 0.90490 0.90978 0.91561 0.91177 0.92349 0.92573 0.93689 0.94087 0.93875 0.96512 0.94429 0.83663 0.73961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.75 5.79 -26.73 -0.15 -0.91 16 3 C -0.07 -0.43 5.61 -27.88 -0.16 -0.59 16 4 C 0.15 1.31 6.18 -82.65 -0.51 0.80 16 5 C -0.12 -1.13 9.27 -39.03 -0.36 -1.49 16 6 C -0.06 -0.62 5.91 -104.67 -0.62 -1.24 16 7 C 0.55 6.50 7.80 -12.19 -0.10 6.41 16 8 O -0.52 -8.06 16.44 5.35 0.09 -7.98 16 9 N -0.72 -7.13 5.51 -61.16 -0.34 -7.46 16 10 C 0.12 1.38 5.55 -4.05 -0.02 1.36 16 11 C -0.12 -1.36 4.84 -26.74 -0.13 -1.49 16 12 C -0.10 -1.63 3.04 -88.47 -0.27 -1.90 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 14 C -0.14 -2.46 6.42 -24.90 -0.16 -2.62 16 15 C 0.18 4.28 5.37 -3.06 -0.02 4.27 16 16 N -0.61 -15.62 3.40 -170.03 -0.58 -16.20 16 17 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -27.39 10.31 55.49 0.57 -26.82 16 21 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.14 2.83 6.04 -2.50 -0.02 2.81 16 26 C -0.16 -1.28 9.55 -38.84 -0.37 -1.65 16 27 C 0.31 2.71 7.74 -17.17 -0.13 2.57 16 28 O -0.48 -3.39 13.56 -18.76 -0.25 -3.65 16 29 N -0.49 -4.63 9.86 -9.60 -0.09 -4.72 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.56 7.94 -51.93 -0.41 0.14 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.41 7.86 -51.93 -0.41 0.00 16 37 H 0.15 1.31 7.62 -52.49 -0.40 0.91 16 38 H 0.40 2.80 6.61 -40.82 -0.27 2.53 16 39 H 0.08 1.05 7.59 -51.93 -0.39 0.66 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 43 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 44 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 45 H 0.04 1.21 7.38 -51.92 -0.38 0.83 16 46 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.02 0.34 7.96 -51.93 -0.41 -0.07 16 49 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 50 H 0.15 0.77 6.53 -52.49 -0.34 0.43 16 51 H 0.40 0.81 9.06 45.56 0.41 1.22 16 LS Contribution 414.38 15.07 6.24 6.24 Total: -1.00 -35.35 414.38 -9.88 -45.23 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.61 Total: -1.01 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.89 Total: -1.02 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.44 Total: -55.20 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.17 Total: -11.62 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.35 -9.88 -45.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691913200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.954 kcal (2) G-P(sol) polarization free energy of solvation -35.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds