Wall clock time and date at job start Wed Apr 1 2020 04:41:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53004 * 109.47347 * 2 1
4 4 C 1.50704 * 109.47133 * 179.97438 * 3 2 1
5 5 C 1.38020 * 119.50541 * 125.00322 * 4 3 2
6 6 C 1.39930 * 119.12973 * 180.02562 * 5 4 3
7 7 C 1.48157 * 120.89574 * 179.97438 * 6 5 4
8 8 O 1.21518 * 119.99702 * 0.02605 * 7 6 5
9 9 N 1.34776 * 120.00494 * 180.02562 * 7 6 5
10 10 C 1.46498 * 120.00443 * 180.02562 * 9 7 6
11 11 C 1.52989 * 109.47292 * 180.02562 * 10 9 7
12 12 C 1.52996 * 109.47415 * 179.97438 * 11 10 9
13 13 H 1.09001 * 110.88839 * 54.29669 * 12 11 10
14 14 C 1.55156 * 111.00798 * 178.17972 * 12 11 10
15 15 C 1.54324 * 102.94432 * 153.57601 * 14 12 11
16 16 N 1.47023 * 107.27313 * 337.80978 * 15 14 12
17 17 C 1.36932 * 125.65439 * 178.97572 * 16 15 14
18 18 H 1.07996 * 120.00224 * 179.97438 * 17 16 15
19 19 C 1.38812 * 119.99382 * 359.97257 * 17 16 15
20 20 N 1.31622 * 120.00605 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 119.99817 * 179.97438 * 19 17 16
22 22 H 1.48503 * 109.47215 * 359.97438 * 21 19 17
23 23 H 1.48504 * 109.47286 * 120.00106 * 21 19 17
24 24 H 1.48500 * 109.47446 * 239.99727 * 21 19 17
25 25 C 1.47474 * 108.71873 * 358.97090 * 16 15 14
26 26 C 1.39619 * 118.21318 * 359.97438 * 6 5 4
27 27 C 1.38843 * 118.95049 * 359.97438 * 26 6 5
28 28 O 1.35686 * 119.62159 * 180.02562 * 27 26 6
29 29 N 1.31876 * 119.51727 * 305.27525 * 4 3 2
30 30 H 1.09001 * 109.47085 * 180.02562 * 1 2 3
31 31 H 1.08995 * 109.47264 * 300.00358 * 1 2 3
32 32 H 1.08997 * 109.46924 * 60.00263 * 1 2 3
33 33 H 1.08999 * 109.47671 * 239.99877 * 2 1 3
34 34 H 1.09006 * 109.46999 * 120.00009 * 2 1 3
35 35 H 1.09006 * 109.46676 * 60.00035 * 3 2 1
36 36 H 1.08993 * 109.47298 * 299.99986 * 3 2 1
37 37 H 1.07996 * 120.43970 * 0.02562 * 5 4 3
38 38 H 0.97002 * 119.99353 * 0.02562 * 9 7 6
39 39 H 1.09003 * 109.46896 * 299.99963 * 10 9 7
40 40 H 1.08998 * 109.46729 * 59.99932 * 10 9 7
41 41 H 1.09005 * 109.47715 * 299.99891 * 11 10 9
42 42 H 1.09002 * 109.47819 * 59.99562 * 11 10 9
43 43 H 1.09010 * 110.71866 * 271.93621 * 14 12 11
44 44 H 1.08992 * 110.72170 * 35.03563 * 14 12 11
45 45 H 1.09012 * 109.88186 * 97.22292 * 15 14 12
46 46 H 1.08997 * 109.88424 * 218.23462 * 15 14 12
47 47 H 0.97000 * 120.00236 * 179.97438 * 20 19 17
48 48 H 1.08997 * 110.35329 * 265.25574 * 25 16 15
49 49 H 1.09001 * 110.40336 * 142.92017 * 25 16 15
50 50 H 1.07999 * 120.52231 * 180.02562 * 26 6 5
51 51 H 0.96700 * 114.00082 * 90.00574 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5471 1.4425 0.0006
5 6 4.2273 2.1313 -0.9831
6 6 5.6266 2.1256 -0.9753
7 6 6.3961 2.8513 -2.0127
8 8 5.8123 3.4628 -2.8856
9 7 7.7435 2.8333 -1.9883
10 6 8.5044 3.5514 -3.0138
11 6 10.0019 3.3703 -2.7580
12 6 10.7966 4.1197 -3.8293
13 1 10.4914 5.1649 -3.8796
14 6 12.3226 3.9974 -3.5772
15 6 12.9208 4.1633 -4.9901
16 7 11.8641 3.8234 -5.9542
17 6 11.9848 3.8631 -7.3176
18 1 11.1461 3.5927 -7.9421
19 6 13.1851 4.2508 -7.8971
20 7 14.2071 4.5808 -7.1361
21 14 13.3500 4.3043 -9.7570
22 1 12.0674 3.8894 -10.3799
23 1 13.6844 5.6866 -10.1848
24 1 14.4297 3.3790 -10.1851
25 6 10.6525 3.4323 -5.2101
26 6 6.2781 1.4175 0.0364
27 6 5.5172 0.7522 0.9883
28 8 6.1362 0.0604 1.9778
29 7 4.1964 0.7798 0.9379
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 1.8934 -0.5138 -0.8899
34 1 1.8933 -0.5139 0.8900
35 1 1.6767 1.9563 0.8901
36 1 1.6768 1.9563 -0.8899
37 1 3.6868 2.6678 -1.7489
38 1 8.2094 2.3448 -1.2917
39 1 8.2535 3.1539 -3.9973
40 1 8.2545 4.6116 -2.9758
41 1 10.2532 3.7674 -1.7745
42 1 10.2515 2.3100 -2.7962
43 1 12.6692 4.7918 -2.9160
44 1 12.5681 3.0191 -3.1641
45 1 13.2402 5.1950 -5.1387
46 1 13.7697 3.4911 -5.1146
47 1 15.0459 4.8515 -7.5410
48 1 10.6128 2.3494 -5.0924
49 1 9.7597 3.7920 -5.7216
50 1 7.3569 1.3885 0.0783
51 1 6.3158 0.5838 2.7708
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001691913200.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:48
Heat of formation + Delta-G solvation = -61.590286 kcal
Electronic energy + Delta-G solvation = -29198.285983 eV
Core-core repulsion = 25096.768447 eV
Total energy + Delta-G solvation = -4101.517535 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.96679 -40.54149 -39.38807 -38.33897 -36.57607 -35.87567 -34.82286 -33.74602
-32.40203 -31.64595 -30.68591 -28.32732 -27.92178 -26.77312 -25.39310 -23.96835
-23.54062 -22.52161 -21.83463 -21.56526 -20.81459 -19.78605 -18.87644 -18.28721
-18.06989 -17.03178 -16.85988 -16.75728 -16.58060 -16.46235 -16.15256 -15.77447
-15.56902 -15.43803 -15.11840 -14.75616 -14.60554 -14.13247 -13.85127 -13.74258
-13.64135 -13.40543 -13.26956 -13.09011 -12.96342 -12.82633 -12.73294 -12.66714
-12.38955 -12.25487 -12.04199 -11.98090 -11.81005 -11.69632 -11.58361 -11.39338
-11.33360 -11.29816 -11.04668 -10.71730 -10.52374 -10.19976 -9.91324 -8.88564
-7.85980 -5.20864 -0.48182 -0.14198 1.43943 1.44730 1.55291 1.66739
1.90524 2.43931 2.48542 2.64396 3.31352 3.32338 3.44928 3.65963
3.79422 3.83435 3.86107 3.98049 4.06755 4.14919 4.16583 4.21298
4.32208 4.36634 4.37316 4.56251 4.61489 4.67310 4.70594 4.76539
4.79843 4.87062 4.89938 4.94325 4.99564 5.00888 5.11997 5.16437
5.20242 5.25669 5.31389 5.33771 5.40990 5.45038 5.48280 5.53790
5.71596 5.80165 6.20961 6.36386 6.56012 6.82178 7.01727 7.11148
7.79261 8.43106 9.24438
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019389 B = 0.001636 C = 0.001549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1443.778241 B =17109.937240 C =18076.796204
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.114 4.114
3 C -0.070 4.070
4 C 0.151 3.849
5 C -0.133 4.133
6 C -0.075 4.075
7 C 0.555 3.445
8 O -0.568 6.568
9 N -0.703 5.703
10 C 0.121 3.879
11 C -0.100 4.100
12 C -0.085 4.085
13 H 0.073 0.927
14 C -0.122 4.122
15 C 0.180 3.820
16 N -0.631 5.631
17 C -0.243 4.243
18 H 0.079 0.921
19 C -0.068 4.068
20 N -0.951 5.951
21 Si 0.977 3.023
22 H -0.267 1.267
23 H -0.291 1.291
24 H -0.291 1.291
25 C 0.132 3.868
26 C -0.152 4.152
27 C 0.310 3.690
28 O -0.486 6.486
29 N -0.503 5.503
30 H 0.056 0.944
31 H 0.062 0.938
32 H 0.061 0.939
33 H 0.051 0.949
34 H 0.060 0.940
35 H 0.096 0.904
36 H 0.098 0.902
37 H 0.152 0.848
38 H 0.417 0.583
39 H 0.055 0.945
40 H 0.066 0.934
41 H 0.100 0.900
42 H 0.081 0.919
43 H 0.082 0.918
44 H 0.076 0.924
45 H 0.007 0.993
46 H 0.003 0.997
47 H 0.246 0.754
48 H 0.025 0.975
49 H 0.033 0.967
50 H 0.173 0.827
51 H 0.424 0.576
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.399 -7.097 23.872 33.495
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.152 4.152
3 C -0.107 4.107
4 C 0.014 3.986
5 C -0.154 4.154
6 C -0.086 4.086
7 C 0.342 3.658
8 O -0.448 6.448
9 N -0.355 5.355
10 C -0.002 4.002
11 C -0.138 4.138
12 C -0.105 4.105
13 H 0.092 0.908
14 C -0.160 4.160
15 C 0.055 3.945
16 N -0.358 5.358
17 C -0.372 4.372
18 H 0.097 0.903
19 C -0.261 4.261
20 N -0.600 5.600
21 Si 0.805 3.195
22 H -0.192 1.192
23 H -0.218 1.218
24 H -0.218 1.218
25 C 0.007 3.993
26 C -0.174 4.174
27 C 0.131 3.869
28 O -0.296 6.296
29 N -0.224 5.224
30 H 0.075 0.925
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.070 0.930
34 H 0.079 0.921
35 H 0.115 0.885
36 H 0.117 0.883
37 H 0.169 0.831
38 H 0.256 0.744
39 H 0.073 0.927
40 H 0.084 0.916
41 H 0.118 0.882
42 H 0.100 0.900
43 H 0.101 0.899
44 H 0.095 0.905
45 H 0.025 0.975
46 H 0.021 0.979
47 H 0.055 0.945
48 H 0.042 0.958
49 H 0.051 0.949
50 H 0.191 0.809
51 H 0.285 0.715
Dipole moment (debyes) X Y Z Total
from point charges -23.061 -7.538 23.366 33.684
hybrid contribution 1.445 0.681 -1.398 2.122
sum -21.617 -6.857 21.968 31.574
Atomic orbital electron populations
1.21759 0.94248 1.02178 1.02511 1.21399 0.96732 0.95213 1.01866
1.20754 0.86113 0.98958 1.04925 1.21282 0.97762 0.90872 0.88726
1.22259 0.93378 0.99953 0.99826 1.20201 0.94510 0.98416 0.95467
1.18379 0.82785 0.80293 0.84389 1.90798 1.70511 1.44919 1.38525
1.45791 1.05213 1.52921 1.31556 1.21397 0.91313 0.96737 0.90756
1.21606 0.91073 1.01757 0.99398 1.22151 0.95037 0.99556 0.93766
0.90808 1.22758 0.94826 1.02331 0.96089 1.20946 0.89928 0.96713
0.86928 1.44855 1.10257 1.78930 1.01712 1.19509 0.97473 1.37981
0.82268 0.90326 1.25647 0.95933 1.02061 1.02435 1.70203 1.02838
1.52698 1.34299 0.85027 0.77688 0.76887 0.79855 1.19166 1.21804
1.21789 1.21858 0.88823 0.96414 0.92169 1.22456 1.03061 0.96837
0.95037 1.19100 0.86601 0.90364 0.90822 1.84775 1.76621 1.39947
1.28278 1.66832 1.10693 1.18413 1.26437 0.92484 0.91940 0.91999
0.93000 0.92109 0.88548 0.88310 0.83055 0.74447 0.92675 0.91566
0.88158 0.89997 0.89913 0.90495 0.97499 0.97875 0.94453 0.95756
0.94870 0.80937 0.71474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16
2 C -0.11 -1.38 5.79 30.59 0.18 -1.20 16
3 C -0.07 -0.79 5.61 29.85 0.17 -0.62 16
4 C 0.15 2.43 6.18 42.50 0.26 2.69 16
5 C -0.13 -2.34 9.27 22.63 0.21 -2.13 16
6 C -0.08 -1.33 5.91 -19.90 -0.12 -1.45 16
7 C 0.55 12.30 7.80 86.88 0.68 12.97 16
8 O -0.57 -17.46 16.44 -3.77 -0.06 -17.52 16
9 N -0.70 -12.09 5.51 -465.69 -2.57 -14.66 16
10 C 0.12 2.61 5.55 86.38 0.48 3.09 16
11 C -0.10 -1.95 4.84 30.59 0.15 -1.81 16
12 C -0.09 -2.57 3.04 -9.40 -0.03 -2.60 16
13 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16
14 C -0.12 -4.08 6.42 31.78 0.20 -3.87 16
15 C 0.18 8.90 5.37 86.73 0.47 9.37 16
16 N -0.63 -33.04 3.40 -691.85 -2.35 -35.38 16
17 C -0.24 -14.06 10.28 84.03 0.86 -13.19 16
18 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16
19 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16
20 N -0.95 -58.37 10.31 21.65 0.22 -58.14 16
21 Si 0.98 46.89 29.55 68.60 2.03 48.92 16
22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16
23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16
24 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16
25 C 0.13 5.29 6.04 86.85 0.52 5.81 16
26 C -0.15 -2.00 9.55 22.75 0.22 -1.78 16
27 C 0.31 4.71 7.74 84.78 0.66 5.36 16
28 O -0.49 -5.67 13.56 -90.05 -1.22 -6.89 16
29 N -0.50 -8.94 9.86 -297.17 -2.93 -11.87 16
30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16
31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16
32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
34 H 0.06 0.89 7.94 -2.38 -0.02 0.87 16
35 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16
36 H 0.10 0.84 7.86 -2.39 -0.02 0.82 16
37 H 0.15 2.61 7.62 -2.91 -0.02 2.58 16
38 H 0.42 4.18 6.61 -92.71 -0.61 3.57 16
39 H 0.05 1.45 7.59 -2.39 -0.02 1.43 16
40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
41 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16
42 H 0.08 1.49 8.03 -2.39 -0.02 1.47 16
43 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16
44 H 0.08 2.29 8.04 -2.39 -0.02 2.27 16
45 H 0.01 0.38 7.38 -2.38 -0.02 0.36 16
46 H 0.00 0.17 7.50 -2.39 -0.02 0.15 16
47 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16
48 H 0.02 0.95 7.96 -2.39 -0.02 0.93 16
49 H 0.03 1.34 8.10 -2.39 -0.02 1.32 16
50 H 0.17 1.16 6.53 -2.91 -0.02 1.14 16
51 H 0.42 0.56 9.06 -74.06 -0.67 -0.11 16
Total: -1.00 -80.11 414.38 -1.13 -81.24
By element:
Atomic # 1 Polarization: 8.12 SS G_CDS: -0.34 Total: 7.78 kcal
Atomic # 6 Polarization: 0.44 SS G_CDS: 6.09 Total: 6.53 kcal
Atomic # 7 Polarization: -112.44 SS G_CDS: -7.62 Total: -120.06 kcal
Atomic # 8 Polarization: -23.13 SS G_CDS: -1.28 Total: -24.41 kcal
Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal
Total: -80.11 -1.13 -81.24 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691913200.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.653 kcal
(2) G-P(sol) polarization free energy of solvation -80.109 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.456 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.243 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds