Wall clock time and date at job start Wed Apr 1 2020 04:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47347 * 2 1 4 4 C 1.50704 * 109.47133 * 179.97438 * 3 2 1 5 5 C 1.38020 * 119.50541 * 125.00322 * 4 3 2 6 6 C 1.39930 * 119.12973 * 180.02562 * 5 4 3 7 7 C 1.48157 * 120.89574 * 179.97438 * 6 5 4 8 8 O 1.21518 * 119.99702 * 0.02605 * 7 6 5 9 9 N 1.34776 * 120.00494 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00443 * 180.02562 * 9 7 6 11 11 C 1.52989 * 109.47292 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47415 * 179.97438 * 11 10 9 13 13 H 1.09001 * 110.88839 * 54.29669 * 12 11 10 14 14 C 1.55156 * 111.00798 * 178.17972 * 12 11 10 15 15 C 1.54324 * 102.94432 * 153.57601 * 14 12 11 16 16 N 1.47023 * 107.27313 * 337.80978 * 15 14 12 17 17 C 1.36932 * 125.65439 * 178.97572 * 16 15 14 18 18 H 1.07996 * 120.00224 * 179.97438 * 17 16 15 19 19 C 1.38812 * 119.99382 * 359.97257 * 17 16 15 20 20 N 1.31622 * 120.00605 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99817 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47215 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47286 * 120.00106 * 21 19 17 24 24 H 1.48500 * 109.47446 * 239.99727 * 21 19 17 25 25 C 1.47474 * 108.71873 * 358.97090 * 16 15 14 26 26 C 1.39619 * 118.21318 * 359.97438 * 6 5 4 27 27 C 1.38843 * 118.95049 * 359.97438 * 26 6 5 28 28 O 1.35686 * 119.62159 * 180.02562 * 27 26 6 29 29 N 1.31876 * 119.51727 * 305.27525 * 4 3 2 30 30 H 1.09001 * 109.47085 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47264 * 300.00358 * 1 2 3 32 32 H 1.08997 * 109.46924 * 60.00263 * 1 2 3 33 33 H 1.08999 * 109.47671 * 239.99877 * 2 1 3 34 34 H 1.09006 * 109.46999 * 120.00009 * 2 1 3 35 35 H 1.09006 * 109.46676 * 60.00035 * 3 2 1 36 36 H 1.08993 * 109.47298 * 299.99986 * 3 2 1 37 37 H 1.07996 * 120.43970 * 0.02562 * 5 4 3 38 38 H 0.97002 * 119.99353 * 0.02562 * 9 7 6 39 39 H 1.09003 * 109.46896 * 299.99963 * 10 9 7 40 40 H 1.08998 * 109.46729 * 59.99932 * 10 9 7 41 41 H 1.09005 * 109.47715 * 299.99891 * 11 10 9 42 42 H 1.09002 * 109.47819 * 59.99562 * 11 10 9 43 43 H 1.09010 * 110.71866 * 271.93621 * 14 12 11 44 44 H 1.08992 * 110.72170 * 35.03563 * 14 12 11 45 45 H 1.09012 * 109.88186 * 97.22292 * 15 14 12 46 46 H 1.08997 * 109.88424 * 218.23462 * 15 14 12 47 47 H 0.97000 * 120.00236 * 179.97438 * 20 19 17 48 48 H 1.08997 * 110.35329 * 265.25574 * 25 16 15 49 49 H 1.09001 * 110.40336 * 142.92017 * 25 16 15 50 50 H 1.07999 * 120.52231 * 180.02562 * 26 6 5 51 51 H 0.96700 * 114.00082 * 90.00574 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2273 2.1313 -0.9831 6 6 5.6266 2.1256 -0.9753 7 6 6.3961 2.8513 -2.0127 8 8 5.8123 3.4628 -2.8856 9 7 7.7435 2.8333 -1.9883 10 6 8.5044 3.5514 -3.0138 11 6 10.0019 3.3703 -2.7580 12 6 10.7966 4.1197 -3.8293 13 1 10.4914 5.1649 -3.8796 14 6 12.3226 3.9974 -3.5772 15 6 12.9208 4.1633 -4.9901 16 7 11.8641 3.8234 -5.9542 17 6 11.9848 3.8631 -7.3176 18 1 11.1461 3.5927 -7.9421 19 6 13.1851 4.2508 -7.8971 20 7 14.2071 4.5808 -7.1361 21 14 13.3500 4.3043 -9.7570 22 1 12.0674 3.8894 -10.3799 23 1 13.6844 5.6866 -10.1848 24 1 14.4297 3.3790 -10.1851 25 6 10.6525 3.4323 -5.2101 26 6 6.2781 1.4175 0.0364 27 6 5.5172 0.7522 0.9883 28 8 6.1362 0.0604 1.9778 29 7 4.1964 0.7798 0.9379 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6768 1.9563 -0.8899 37 1 3.6868 2.6678 -1.7489 38 1 8.2094 2.3448 -1.2917 39 1 8.2535 3.1539 -3.9973 40 1 8.2545 4.6116 -2.9758 41 1 10.2532 3.7674 -1.7745 42 1 10.2515 2.3100 -2.7962 43 1 12.6692 4.7918 -2.9160 44 1 12.5681 3.0191 -3.1641 45 1 13.2402 5.1950 -5.1387 46 1 13.7697 3.4911 -5.1146 47 1 15.0459 4.8515 -7.5410 48 1 10.6128 2.3494 -5.0924 49 1 9.7597 3.7920 -5.7216 50 1 7.3569 1.3885 0.0783 51 1 6.3158 0.5838 2.7708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691913200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:48 Heat of formation + Delta-G solvation = -61.590286 kcal Electronic energy + Delta-G solvation = -29198.285983 eV Core-core repulsion = 25096.768447 eV Total energy + Delta-G solvation = -4101.517535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96679 -40.54149 -39.38807 -38.33897 -36.57607 -35.87567 -34.82286 -33.74602 -32.40203 -31.64595 -30.68591 -28.32732 -27.92178 -26.77312 -25.39310 -23.96835 -23.54062 -22.52161 -21.83463 -21.56526 -20.81459 -19.78605 -18.87644 -18.28721 -18.06989 -17.03178 -16.85988 -16.75728 -16.58060 -16.46235 -16.15256 -15.77447 -15.56902 -15.43803 -15.11840 -14.75616 -14.60554 -14.13247 -13.85127 -13.74258 -13.64135 -13.40543 -13.26956 -13.09011 -12.96342 -12.82633 -12.73294 -12.66714 -12.38955 -12.25487 -12.04199 -11.98090 -11.81005 -11.69632 -11.58361 -11.39338 -11.33360 -11.29816 -11.04668 -10.71730 -10.52374 -10.19976 -9.91324 -8.88564 -7.85980 -5.20864 -0.48182 -0.14198 1.43943 1.44730 1.55291 1.66739 1.90524 2.43931 2.48542 2.64396 3.31352 3.32338 3.44928 3.65963 3.79422 3.83435 3.86107 3.98049 4.06755 4.14919 4.16583 4.21298 4.32208 4.36634 4.37316 4.56251 4.61489 4.67310 4.70594 4.76539 4.79843 4.87062 4.89938 4.94325 4.99564 5.00888 5.11997 5.16437 5.20242 5.25669 5.31389 5.33771 5.40990 5.45038 5.48280 5.53790 5.71596 5.80165 6.20961 6.36386 6.56012 6.82178 7.01727 7.11148 7.79261 8.43106 9.24438 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.001636 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.778241 B =17109.937240 C =18076.796204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.070 4.070 4 C 0.151 3.849 5 C -0.133 4.133 6 C -0.075 4.075 7 C 0.555 3.445 8 O -0.568 6.568 9 N -0.703 5.703 10 C 0.121 3.879 11 C -0.100 4.100 12 C -0.085 4.085 13 H 0.073 0.927 14 C -0.122 4.122 15 C 0.180 3.820 16 N -0.631 5.631 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.977 3.023 22 H -0.267 1.267 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.132 3.868 26 C -0.152 4.152 27 C 0.310 3.690 28 O -0.486 6.486 29 N -0.503 5.503 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.152 0.848 38 H 0.417 0.583 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.007 0.993 46 H 0.003 0.997 47 H 0.246 0.754 48 H 0.025 0.975 49 H 0.033 0.967 50 H 0.173 0.827 51 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.399 -7.097 23.872 33.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.107 4.107 4 C 0.014 3.986 5 C -0.154 4.154 6 C -0.086 4.086 7 C 0.342 3.658 8 O -0.448 6.448 9 N -0.355 5.355 10 C -0.002 4.002 11 C -0.138 4.138 12 C -0.105 4.105 13 H 0.092 0.908 14 C -0.160 4.160 15 C 0.055 3.945 16 N -0.358 5.358 17 C -0.372 4.372 18 H 0.097 0.903 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.805 3.195 22 H -0.192 1.192 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.007 3.993 26 C -0.174 4.174 27 C 0.131 3.869 28 O -0.296 6.296 29 N -0.224 5.224 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.169 0.831 38 H 0.256 0.744 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.025 0.975 46 H 0.021 0.979 47 H 0.055 0.945 48 H 0.042 0.958 49 H 0.051 0.949 50 H 0.191 0.809 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -23.061 -7.538 23.366 33.684 hybrid contribution 1.445 0.681 -1.398 2.122 sum -21.617 -6.857 21.968 31.574 Atomic orbital electron populations 1.21759 0.94248 1.02178 1.02511 1.21399 0.96732 0.95213 1.01866 1.20754 0.86113 0.98958 1.04925 1.21282 0.97762 0.90872 0.88726 1.22259 0.93378 0.99953 0.99826 1.20201 0.94510 0.98416 0.95467 1.18379 0.82785 0.80293 0.84389 1.90798 1.70511 1.44919 1.38525 1.45791 1.05213 1.52921 1.31556 1.21397 0.91313 0.96737 0.90756 1.21606 0.91073 1.01757 0.99398 1.22151 0.95037 0.99556 0.93766 0.90808 1.22758 0.94826 1.02331 0.96089 1.20946 0.89928 0.96713 0.86928 1.44855 1.10257 1.78930 1.01712 1.19509 0.97473 1.37981 0.82268 0.90326 1.25647 0.95933 1.02061 1.02435 1.70203 1.02838 1.52698 1.34299 0.85027 0.77688 0.76887 0.79855 1.19166 1.21804 1.21789 1.21858 0.88823 0.96414 0.92169 1.22456 1.03061 0.96837 0.95037 1.19100 0.86601 0.90364 0.90822 1.84775 1.76621 1.39947 1.28278 1.66832 1.10693 1.18413 1.26437 0.92484 0.91940 0.91999 0.93000 0.92109 0.88548 0.88310 0.83055 0.74447 0.92675 0.91566 0.88158 0.89997 0.89913 0.90495 0.97499 0.97875 0.94453 0.95756 0.94870 0.80937 0.71474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.11 -1.38 5.79 30.59 0.18 -1.20 16 3 C -0.07 -0.79 5.61 29.85 0.17 -0.62 16 4 C 0.15 2.43 6.18 42.50 0.26 2.69 16 5 C -0.13 -2.34 9.27 22.63 0.21 -2.13 16 6 C -0.08 -1.33 5.91 -19.90 -0.12 -1.45 16 7 C 0.55 12.30 7.80 86.88 0.68 12.97 16 8 O -0.57 -17.46 16.44 -3.77 -0.06 -17.52 16 9 N -0.70 -12.09 5.51 -465.69 -2.57 -14.66 16 10 C 0.12 2.61 5.55 86.38 0.48 3.09 16 11 C -0.10 -1.95 4.84 30.59 0.15 -1.81 16 12 C -0.09 -2.57 3.04 -9.40 -0.03 -2.60 16 13 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 14 C -0.12 -4.08 6.42 31.78 0.20 -3.87 16 15 C 0.18 8.90 5.37 86.73 0.47 9.37 16 16 N -0.63 -33.04 3.40 -691.85 -2.35 -35.38 16 17 C -0.24 -14.06 10.28 84.03 0.86 -13.19 16 18 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 19 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 20 N -0.95 -58.37 10.31 21.65 0.22 -58.14 16 21 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 25 C 0.13 5.29 6.04 86.85 0.52 5.81 16 26 C -0.15 -2.00 9.55 22.75 0.22 -1.78 16 27 C 0.31 4.71 7.74 84.78 0.66 5.36 16 28 O -0.49 -5.67 13.56 -90.05 -1.22 -6.89 16 29 N -0.50 -8.94 9.86 -297.17 -2.93 -11.87 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.89 7.94 -2.38 -0.02 0.87 16 35 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.10 0.84 7.86 -2.39 -0.02 0.82 16 37 H 0.15 2.61 7.62 -2.91 -0.02 2.58 16 38 H 0.42 4.18 6.61 -92.71 -0.61 3.57 16 39 H 0.05 1.45 7.59 -2.39 -0.02 1.43 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.08 1.49 8.03 -2.39 -0.02 1.47 16 43 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 44 H 0.08 2.29 8.04 -2.39 -0.02 2.27 16 45 H 0.01 0.38 7.38 -2.38 -0.02 0.36 16 46 H 0.00 0.17 7.50 -2.39 -0.02 0.15 16 47 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 48 H 0.02 0.95 7.96 -2.39 -0.02 0.93 16 49 H 0.03 1.34 8.10 -2.39 -0.02 1.32 16 50 H 0.17 1.16 6.53 -2.91 -0.02 1.14 16 51 H 0.42 0.56 9.06 -74.06 -0.67 -0.11 16 Total: -1.00 -80.11 414.38 -1.13 -81.24 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -0.34 Total: 7.78 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.09 Total: 6.53 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -7.62 Total: -120.06 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -1.28 Total: -24.41 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -80.11 -1.13 -81.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691913200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.653 kcal (2) G-P(sol) polarization free energy of solvation -80.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds