Wall clock time and date at job start Wed Apr 1 2020 04:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47204 * 2 1 4 4 C 1.50703 * 109.47266 * 120.00145 * 2 1 3 5 5 C 1.38604 * 119.54788 * 275.00004 * 4 2 1 6 6 C 1.38587 * 119.34888 * 179.97438 * 5 4 2 7 7 C 1.38632 * 118.48834 * 0.02562 * 6 5 4 8 8 C 1.39266 * 119.06277 * 359.97438 * 7 6 5 9 9 C 1.48165 * 119.72263 * 179.97438 * 8 7 6 10 10 O 1.21512 * 120.00269 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99862 * 179.97438 * 9 8 7 12 12 C 1.46509 * 119.99884 * 179.72273 * 11 9 8 13 13 C 1.53000 * 109.47064 * 175.90782 * 12 11 9 14 14 N 1.46493 * 109.54237 * 305.06268 * 13 12 11 15 15 C 1.36936 * 119.99789 * 300.68777 * 14 13 12 16 16 H 1.08002 * 120.00558 * 354.08429 * 15 14 13 17 17 C 1.38817 * 119.99955 * 174.08351 * 15 14 13 18 18 N 1.31625 * 119.99824 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00002 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47208 * 60.00003 * 19 17 15 21 21 H 1.48509 * 109.47034 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47001 * 299.99558 * 19 17 15 23 23 C 1.53174 * 109.54341 * 184.88207 * 13 12 11 24 24 C 1.53097 * 109.15685 * 183.24387 * 23 13 12 25 25 O 1.42901 * 109.48883 * 57.47647 * 24 23 13 26 26 C 1.42902 * 114.09330 * 298.88567 * 25 24 23 27 27 C 1.53088 * 109.41588 * 61.16362 * 26 25 24 28 28 N 1.31501 * 119.55121 * 95.24787 * 4 2 1 29 29 H 1.08995 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47082 * 300.00082 * 1 2 3 31 31 H 1.08998 * 109.47172 * 59.99920 * 1 2 3 32 32 H 1.09004 * 109.47082 * 239.99917 * 2 1 3 33 33 H 1.09000 * 109.47336 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47470 * 299.99693 * 3 2 1 35 35 H 1.09001 * 109.47580 * 60.00271 * 3 2 1 36 36 H 1.08000 * 120.32369 * 0.02562 * 5 4 2 37 37 H 1.08002 * 120.75584 * 179.97438 * 6 5 4 38 38 H 1.08000 * 120.46832 * 180.02562 * 7 6 5 39 39 H 0.96996 * 120.00311 * 0.02562 * 11 9 8 40 40 H 1.09005 * 109.47079 * 295.90863 * 12 11 9 41 41 H 1.08997 * 109.46879 * 55.90426 * 12 11 9 42 42 H 0.97001 * 120.00271 * 120.69060 * 14 13 12 43 43 H 0.97002 * 119.99783 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.52401 * 303.06078 * 23 13 12 45 45 H 1.09001 * 109.52000 * 63.24567 * 23 13 12 46 46 H 1.09003 * 109.40858 * 297.49114 * 24 23 13 47 47 H 1.09005 * 109.49435 * 177.51401 * 24 23 13 48 48 H 1.09002 * 109.48469 * 301.17413 * 26 25 24 49 49 H 1.09006 * 109.48435 * 181.14814 * 26 25 24 50 50 H 1.08999 * 109.52311 * 182.48001 * 27 26 25 51 51 H 1.09004 * 109.57508 * 62.32228 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1611 -0.0099 2.4195 6 6 2.6230 -0.6675 3.5486 7 6 2.9424 -2.0126 3.4463 8 6 2.7883 -2.6531 2.2192 9 6 3.1258 -4.0902 2.0932 10 8 3.5355 -4.7050 3.0579 11 7 2.9783 -4.7157 0.9085 12 6 3.3177 -6.1353 0.7823 13 6 2.9651 -6.6209 -0.6251 14 7 1.5571 -6.3296 -0.9055 15 6 0.5769 -6.8559 -0.1073 16 1 0.8335 -7.5612 0.6694 17 6 -0.7468 -6.4829 -0.2962 18 7 -1.0598 -5.6238 -1.2430 19 14 -2.0839 -7.2004 0.7932 20 1 -1.8106 -6.8479 2.2096 21 1 -3.4014 -6.6461 0.3900 22 1 -2.1030 -8.6779 0.6456 23 6 3.2051 -8.1307 -0.7213 24 6 2.9274 -8.5932 -2.1541 25 8 3.7615 -7.8674 -3.0595 26 6 3.5457 -6.4549 -3.0468 27 6 3.8505 -5.9060 -1.6505 28 7 2.3472 -1.9853 1.1602 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9033 1.0378 2.4658 37 1 2.7325 -0.1437 4.4868 38 1 3.3047 -2.5564 4.3061 39 1 2.6515 -4.2249 0.1383 40 1 4.3852 -6.2705 0.9565 41 1 2.7541 -6.7103 1.5170 42 1 1.3191 -5.7639 -1.6567 43 1 -1.9847 -5.3629 -1.3748 44 1 4.2406 -8.3522 -0.4626 45 1 2.5378 -8.6501 -0.0336 46 1 1.8809 -8.4098 -2.3975 47 1 3.1390 -9.6590 -2.2398 48 1 2.5073 -6.2434 -3.3019 49 1 4.2029 -5.9801 -3.7754 50 1 3.6442 -4.8360 -1.6268 51 1 4.8994 -6.0802 -1.4106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699879965.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:21 Heat of formation + Delta-G solvation = -45.325494 kcal Electronic energy + Delta-G solvation = -32054.669231 eV Core-core repulsion = 27953.856990 eV Total energy + Delta-G solvation = -4100.812241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.61300 -39.46770 -38.47062 -35.84993 -35.46808 -33.53098 -32.61233 -31.97611 -30.62685 -30.29895 -29.12859 -27.35183 -26.91262 -24.41292 -23.98087 -23.87138 -22.99025 -22.08727 -20.80814 -19.76599 -18.62260 -17.64080 -17.14280 -16.80726 -16.01803 -15.64770 -15.47801 -15.24493 -14.95961 -14.77513 -14.66142 -14.30051 -14.24151 -13.90380 -13.74679 -13.59319 -13.44663 -12.94931 -12.81784 -12.65279 -12.42662 -12.14182 -12.06205 -11.96946 -11.72843 -11.45650 -11.38824 -11.22413 -10.95691 -10.87775 -10.86495 -10.77860 -10.34322 -10.05521 -9.91813 -9.89520 -9.75923 -9.68503 -9.31127 -9.07868 -8.98477 -8.80354 -8.38346 -7.04993 -5.81936 -3.11864 0.76014 1.23604 3.04059 3.41020 3.45709 3.47618 3.56353 4.02759 4.09279 4.39161 4.54354 4.56215 4.88631 4.93040 4.97524 5.07862 5.14046 5.21303 5.22227 5.28615 5.37865 5.48120 5.55952 5.57895 5.58676 5.66413 5.68383 5.72687 5.79128 5.82130 5.90937 5.97045 6.01866 6.09815 6.11209 6.15324 6.21445 6.27090 6.29922 6.32802 6.41712 6.56326 6.59653 6.61429 6.74488 6.81184 7.04437 7.67590 7.72597 7.81115 8.16219 8.34826 8.67878 9.47763 9.98387 10.35151 11.39528 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.003895 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.674785 B = 7187.017393 C = 7880.330439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C -0.146 4.146 4 C 0.137 3.863 5 C -0.156 4.156 6 C -0.083 4.083 7 C -0.124 4.124 8 C 0.094 3.906 9 C 0.564 3.436 10 O -0.552 6.552 11 N -0.674 5.674 12 C 0.116 3.884 13 C 0.190 3.810 14 N -0.710 5.710 15 C -0.236 4.236 16 H 0.069 0.931 17 C -0.004 4.004 18 N -0.927 5.927 19 Si 0.899 3.101 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.154 4.154 24 C 0.070 3.930 25 O -0.393 6.393 26 C 0.067 3.933 27 C -0.152 4.152 28 N -0.448 5.448 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.413 0.587 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.059 0.941 49 H 0.082 0.918 50 H 0.070 0.930 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.531 11.823 1.980 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 C -0.204 4.204 4 C -0.003 4.003 5 C -0.176 4.176 6 C -0.108 4.108 7 C -0.144 4.144 8 C -0.044 4.044 9 C 0.347 3.653 10 O -0.431 6.431 11 N -0.323 5.323 12 C -0.010 4.010 13 C 0.097 3.903 14 N -0.352 5.352 15 C -0.367 4.367 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.731 3.269 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.194 4.194 24 C -0.006 4.006 25 O -0.312 6.312 26 C -0.010 4.010 27 C -0.190 4.190 28 N -0.160 5.160 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.251 0.749 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.077 0.923 49 H 0.100 0.900 50 H 0.089 0.911 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.745 10.718 1.840 13.955 hybrid contribution -1.333 0.619 1.264 1.938 sum 7.413 11.337 3.104 13.897 Atomic orbital electron populations 1.21807 0.93269 1.03232 1.01728 1.20062 0.96511 0.95008 0.94983 1.21924 1.01162 0.95052 1.02218 1.21257 0.94645 0.89423 0.95002 1.22156 1.00513 1.01567 0.93363 1.21560 0.96348 0.94067 0.98860 1.22093 0.98781 0.94970 0.98604 1.21275 0.98134 0.94841 0.90188 1.17819 0.78691 0.85095 0.83649 1.90729 1.47916 1.66284 1.38127 1.45577 1.63462 1.11392 1.11836 1.21881 0.98299 0.80906 0.99904 1.19824 0.86672 0.92818 0.90963 1.42446 0.98149 1.59814 1.34838 1.18988 0.86691 1.19631 1.11350 0.91358 1.24666 0.97204 0.99319 0.98843 1.69637 1.17761 1.36152 1.33861 0.86396 0.81684 0.78522 0.80345 1.21411 1.21800 1.21263 1.22482 1.00627 0.98145 0.98175 1.22440 0.95357 0.94541 0.88286 1.87797 1.62771 1.18401 1.62247 1.22454 1.01171 0.81503 0.95885 1.22364 0.99871 1.00448 0.96359 1.67428 1.08854 1.08652 1.31042 0.91450 0.92855 0.91843 0.88848 0.92472 0.91752 0.92340 0.84446 0.84370 0.83674 0.74927 0.92923 0.91136 0.77983 0.93548 0.92579 0.90505 0.91456 0.90363 0.92288 0.90021 0.91108 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.18 37.16 0.34 -1.30 16 2 C -0.05 -0.53 3.23 -91.77 -0.30 -0.82 16 3 C -0.15 -1.19 8.62 37.15 0.32 -0.87 16 4 C 0.14 1.85 5.79 -82.60 -0.48 1.37 16 5 C -0.16 -1.73 9.18 -39.32 -0.36 -2.09 16 6 C -0.08 -0.92 10.17 -39.31 -0.40 -1.32 16 7 C -0.12 -1.76 9.63 -39.05 -0.38 -2.14 16 8 C 0.09 1.61 6.75 -83.01 -0.56 1.05 16 9 C 0.56 11.01 7.81 -12.18 -0.10 10.91 16 10 O -0.55 -11.84 16.32 5.35 0.09 -11.75 16 11 N -0.67 -12.87 5.15 -61.14 -0.32 -13.19 16 12 C 0.12 2.19 4.32 -4.04 -0.02 2.17 16 13 C 0.19 3.45 0.41 -131.64 -0.05 3.40 16 14 N -0.71 -15.64 3.77 -47.06 -0.18 -15.82 16 15 C -0.24 -5.98 8.70 -15.06 -0.13 -6.11 16 16 H 0.07 1.75 6.75 -52.49 -0.35 1.39 16 17 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 18 N -0.93 -26.20 13.07 55.49 0.73 -25.47 16 19 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C -0.15 -2.66 4.83 -26.59 -0.13 -2.79 16 24 C 0.07 1.21 6.68 37.21 0.25 1.46 16 25 O -0.39 -6.80 10.77 -35.23 -0.38 -7.18 16 26 C 0.07 1.06 6.67 37.20 0.25 1.31 16 27 C -0.15 -2.41 4.80 -26.59 -0.13 -2.53 16 28 N -0.45 -7.40 9.45 -6.06 -0.06 -7.45 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.41 6.48 -51.93 -0.34 0.07 16 36 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.15 1.97 7.64 -52.49 -0.40 1.57 16 39 H 0.41 7.97 6.63 -40.82 -0.27 7.70 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.50 7.54 -51.93 -0.39 1.10 16 42 H 0.39 9.14 6.72 -40.82 -0.27 8.87 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 1.41 7.12 -51.93 -0.37 1.04 16 46 H 0.07 1.33 7.75 -51.93 -0.40 0.93 16 47 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.06 1.03 7.09 -51.93 -0.37 0.67 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.07 1.10 7.20 -51.93 -0.37 0.72 16 51 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 404.84 15.07 6.10 6.10 Total: -1.00 -30.32 404.84 -9.09 -39.40 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -8.08 Total: 16.78 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.96 Total: 1.50 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: 0.18 Total: -61.93 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.29 Total: -18.93 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.32 -9.09 -39.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699879965.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.921 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds