Wall clock time and date at job start Wed Apr 1 2020 04:33:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52994 * 109.47204 * 2 1
4 4 C 1.50703 * 109.47266 * 120.00145 * 2 1 3
5 5 C 1.38604 * 119.54788 * 275.00004 * 4 2 1
6 6 C 1.38587 * 119.34888 * 179.97438 * 5 4 2
7 7 C 1.38632 * 118.48834 * 0.02562 * 6 5 4
8 8 C 1.39266 * 119.06277 * 359.97438 * 7 6 5
9 9 C 1.48165 * 119.72263 * 179.97438 * 8 7 6
10 10 O 1.21512 * 120.00269 * 359.97438 * 9 8 7
11 11 N 1.34778 * 119.99862 * 179.97438 * 9 8 7
12 12 C 1.46509 * 119.99884 * 179.72273 * 11 9 8
13 13 C 1.53000 * 109.47064 * 175.90782 * 12 11 9
14 14 N 1.46493 * 109.54237 * 305.06268 * 13 12 11
15 15 C 1.36936 * 119.99789 * 300.68777 * 14 13 12
16 16 H 1.08002 * 120.00558 * 354.08429 * 15 14 13
17 17 C 1.38817 * 119.99955 * 174.08351 * 15 14 13
18 18 N 1.31625 * 119.99824 * 0.02562 * 17 15 14
19 19 Si 1.86800 * 120.00002 * 180.02562 * 17 15 14
20 20 H 1.48493 * 109.47208 * 60.00003 * 19 17 15
21 21 H 1.48509 * 109.47034 * 180.02562 * 19 17 15
22 22 H 1.48504 * 109.47001 * 299.99558 * 19 17 15
23 23 C 1.53174 * 109.54341 * 184.88207 * 13 12 11
24 24 C 1.53097 * 109.15685 * 183.24387 * 23 13 12
25 25 O 1.42901 * 109.48883 * 57.47647 * 24 23 13
26 26 C 1.42902 * 114.09330 * 298.88567 * 25 24 23
27 27 C 1.53088 * 109.41588 * 61.16362 * 26 25 24
28 28 N 1.31501 * 119.55121 * 95.24787 * 4 2 1
29 29 H 1.08995 * 109.47356 * 179.97438 * 1 2 3
30 30 H 1.09004 * 109.47082 * 300.00082 * 1 2 3
31 31 H 1.08998 * 109.47172 * 59.99920 * 1 2 3
32 32 H 1.09004 * 109.47082 * 239.99917 * 2 1 3
33 33 H 1.09000 * 109.47336 * 179.97438 * 3 2 1
34 34 H 1.08999 * 109.47470 * 299.99693 * 3 2 1
35 35 H 1.09001 * 109.47580 * 60.00271 * 3 2 1
36 36 H 1.08000 * 120.32369 * 0.02562 * 5 4 2
37 37 H 1.08002 * 120.75584 * 179.97438 * 6 5 4
38 38 H 1.08000 * 120.46832 * 180.02562 * 7 6 5
39 39 H 0.96996 * 120.00311 * 0.02562 * 11 9 8
40 40 H 1.09005 * 109.47079 * 295.90863 * 12 11 9
41 41 H 1.08997 * 109.46879 * 55.90426 * 12 11 9
42 42 H 0.97001 * 120.00271 * 120.69060 * 14 13 12
43 43 H 0.97002 * 119.99783 * 180.02562 * 18 17 15
44 44 H 1.09005 * 109.52401 * 303.06078 * 23 13 12
45 45 H 1.09001 * 109.52000 * 63.24567 * 23 13 12
46 46 H 1.09003 * 109.40858 * 297.49114 * 24 23 13
47 47 H 1.09005 * 109.49435 * 177.51401 * 24 23 13
48 48 H 1.09002 * 109.48469 * 301.17413 * 26 25 24
49 49 H 1.09006 * 109.48435 * 181.14814 * 26 25 24
50 50 H 1.08999 * 109.52311 * 182.48001 * 27 26 25
51 51 H 1.09004 * 109.57508 * 62.32228 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0324 -0.7104 1.2305
5 6 2.1611 -0.0099 2.4195
6 6 2.6230 -0.6675 3.5486
7 6 2.9424 -2.0126 3.4463
8 6 2.7883 -2.6531 2.2192
9 6 3.1258 -4.0902 2.0932
10 8 3.5355 -4.7050 3.0579
11 7 2.9783 -4.7157 0.9085
12 6 3.3177 -6.1353 0.7823
13 6 2.9651 -6.6209 -0.6251
14 7 1.5571 -6.3296 -0.9055
15 6 0.5769 -6.8559 -0.1073
16 1 0.8335 -7.5612 0.6694
17 6 -0.7468 -6.4829 -0.2962
18 7 -1.0598 -5.6238 -1.2430
19 14 -2.0839 -7.2004 0.7932
20 1 -1.8106 -6.8479 2.2096
21 1 -3.4014 -6.6461 0.3900
22 1 -2.1030 -8.6779 0.6456
23 6 3.2051 -8.1307 -0.7213
24 6 2.9274 -8.5932 -2.1541
25 8 3.7615 -7.8674 -3.0595
26 6 3.5457 -6.4549 -3.0468
27 6 3.8505 -5.9060 -1.6505
28 7 2.3472 -1.9853 1.1602
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 3.1300 1.4425 0.0005
34 1 1.6767 1.9563 -0.8900
35 1 1.6767 1.9563 0.8900
36 1 1.9033 1.0378 2.4658
37 1 2.7325 -0.1437 4.4868
38 1 3.3047 -2.5564 4.3061
39 1 2.6515 -4.2249 0.1383
40 1 4.3852 -6.2705 0.9565
41 1 2.7541 -6.7103 1.5170
42 1 1.3191 -5.7639 -1.6567
43 1 -1.9847 -5.3629 -1.3748
44 1 4.2406 -8.3522 -0.4626
45 1 2.5378 -8.6501 -0.0336
46 1 1.8809 -8.4098 -2.3975
47 1 3.1390 -9.6590 -2.2398
48 1 2.5073 -6.2434 -3.3019
49 1 4.2029 -5.9801 -3.7754
50 1 3.6442 -4.8360 -1.6268
51 1 4.8994 -6.0802 -1.4106
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699879965.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:33:21
Heat of formation + Delta-G solvation = -45.325494 kcal
Electronic energy + Delta-G solvation = -32054.669231 eV
Core-core repulsion = 27953.856990 eV
Total energy + Delta-G solvation = -4100.812241 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-40.61300 -39.46770 -38.47062 -35.84993 -35.46808 -33.53098 -32.61233 -31.97611
-30.62685 -30.29895 -29.12859 -27.35183 -26.91262 -24.41292 -23.98087 -23.87138
-22.99025 -22.08727 -20.80814 -19.76599 -18.62260 -17.64080 -17.14280 -16.80726
-16.01803 -15.64770 -15.47801 -15.24493 -14.95961 -14.77513 -14.66142 -14.30051
-14.24151 -13.90380 -13.74679 -13.59319 -13.44663 -12.94931 -12.81784 -12.65279
-12.42662 -12.14182 -12.06205 -11.96946 -11.72843 -11.45650 -11.38824 -11.22413
-10.95691 -10.87775 -10.86495 -10.77860 -10.34322 -10.05521 -9.91813 -9.89520
-9.75923 -9.68503 -9.31127 -9.07868 -8.98477 -8.80354 -8.38346 -7.04993
-5.81936 -3.11864 0.76014 1.23604 3.04059 3.41020 3.45709 3.47618
3.56353 4.02759 4.09279 4.39161 4.54354 4.56215 4.88631 4.93040
4.97524 5.07862 5.14046 5.21303 5.22227 5.28615 5.37865 5.48120
5.55952 5.57895 5.58676 5.66413 5.68383 5.72687 5.79128 5.82130
5.90937 5.97045 6.01866 6.09815 6.11209 6.15324 6.21445 6.27090
6.29922 6.32802 6.41712 6.56326 6.59653 6.61429 6.74488 6.81184
7.04437 7.67590 7.72597 7.81115 8.16219 8.34826 8.67878 9.47763
9.98387 10.35151 11.39528
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008812 B = 0.003895 C = 0.003552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3176.674785 B = 7187.017393 C = 7880.330439
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.047 4.047
3 C -0.146 4.146
4 C 0.137 3.863
5 C -0.156 4.156
6 C -0.083 4.083
7 C -0.124 4.124
8 C 0.094 3.906
9 C 0.564 3.436
10 O -0.552 6.552
11 N -0.674 5.674
12 C 0.116 3.884
13 C 0.190 3.810
14 N -0.710 5.710
15 C -0.236 4.236
16 H 0.069 0.931
17 C -0.004 4.004
18 N -0.927 5.927
19 Si 0.899 3.101
20 H -0.287 1.287
21 H -0.292 1.292
22 H -0.286 1.286
23 C -0.154 4.154
24 C 0.070 3.930
25 O -0.393 6.393
26 C 0.067 3.933
27 C -0.152 4.152
28 N -0.448 5.448
29 H 0.066 0.934
30 H 0.052 0.948
31 H 0.063 0.937
32 H 0.093 0.907
33 H 0.056 0.944
34 H 0.063 0.937
35 H 0.058 0.942
36 H 0.138 0.862
37 H 0.138 0.862
38 H 0.145 0.855
39 H 0.413 0.587
40 H 0.053 0.947
41 H 0.070 0.930
42 H 0.385 0.615
43 H 0.255 0.745
44 H 0.056 0.944
45 H 0.076 0.924
46 H 0.067 0.933
47 H 0.078 0.922
48 H 0.059 0.941
49 H 0.082 0.918
50 H 0.070 0.930
51 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.531 11.823 1.980 14.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.066 4.066
3 C -0.204 4.204
4 C -0.003 4.003
5 C -0.176 4.176
6 C -0.108 4.108
7 C -0.144 4.144
8 C -0.044 4.044
9 C 0.347 3.653
10 O -0.431 6.431
11 N -0.323 5.323
12 C -0.010 4.010
13 C 0.097 3.903
14 N -0.352 5.352
15 C -0.367 4.367
16 H 0.086 0.914
17 C -0.200 4.200
18 N -0.574 5.574
19 Si 0.731 3.269
20 H -0.214 1.214
21 H -0.218 1.218
22 H -0.213 1.213
23 C -0.194 4.194
24 C -0.006 4.006
25 O -0.312 6.312
26 C -0.010 4.010
27 C -0.190 4.190
28 N -0.160 5.160
29 H 0.085 0.915
30 H 0.071 0.929
31 H 0.082 0.918
32 H 0.112 0.888
33 H 0.075 0.925
34 H 0.082 0.918
35 H 0.077 0.923
36 H 0.156 0.844
37 H 0.156 0.844
38 H 0.163 0.837
39 H 0.251 0.749
40 H 0.071 0.929
41 H 0.089 0.911
42 H 0.220 0.780
43 H 0.065 0.935
44 H 0.074 0.926
45 H 0.095 0.905
46 H 0.085 0.915
47 H 0.096 0.904
48 H 0.077 0.923
49 H 0.100 0.900
50 H 0.089 0.911
51 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 8.745 10.718 1.840 13.955
hybrid contribution -1.333 0.619 1.264 1.938
sum 7.413 11.337 3.104 13.897
Atomic orbital electron populations
1.21807 0.93269 1.03232 1.01728 1.20062 0.96511 0.95008 0.94983
1.21924 1.01162 0.95052 1.02218 1.21257 0.94645 0.89423 0.95002
1.22156 1.00513 1.01567 0.93363 1.21560 0.96348 0.94067 0.98860
1.22093 0.98781 0.94970 0.98604 1.21275 0.98134 0.94841 0.90188
1.17819 0.78691 0.85095 0.83649 1.90729 1.47916 1.66284 1.38127
1.45577 1.63462 1.11392 1.11836 1.21881 0.98299 0.80906 0.99904
1.19824 0.86672 0.92818 0.90963 1.42446 0.98149 1.59814 1.34838
1.18988 0.86691 1.19631 1.11350 0.91358 1.24666 0.97204 0.99319
0.98843 1.69637 1.17761 1.36152 1.33861 0.86396 0.81684 0.78522
0.80345 1.21411 1.21800 1.21263 1.22482 1.00627 0.98145 0.98175
1.22440 0.95357 0.94541 0.88286 1.87797 1.62771 1.18401 1.62247
1.22454 1.01171 0.81503 0.95885 1.22364 0.99871 1.00448 0.96359
1.67428 1.08854 1.08652 1.31042 0.91450 0.92855 0.91843 0.88848
0.92472 0.91752 0.92340 0.84446 0.84370 0.83674 0.74927 0.92923
0.91136 0.77983 0.93548 0.92579 0.90505 0.91456 0.90363 0.92288
0.90021 0.91108 0.91234
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.64 9.18 37.16 0.34 -1.30 16
2 C -0.05 -0.53 3.23 -91.77 -0.30 -0.82 16
3 C -0.15 -1.19 8.62 37.15 0.32 -0.87 16
4 C 0.14 1.85 5.79 -82.60 -0.48 1.37 16
5 C -0.16 -1.73 9.18 -39.32 -0.36 -2.09 16
6 C -0.08 -0.92 10.17 -39.31 -0.40 -1.32 16
7 C -0.12 -1.76 9.63 -39.05 -0.38 -2.14 16
8 C 0.09 1.61 6.75 -83.01 -0.56 1.05 16
9 C 0.56 11.01 7.81 -12.18 -0.10 10.91 16
10 O -0.55 -11.84 16.32 5.35 0.09 -11.75 16
11 N -0.67 -12.87 5.15 -61.14 -0.32 -13.19 16
12 C 0.12 2.19 4.32 -4.04 -0.02 2.17 16
13 C 0.19 3.45 0.41 -131.64 -0.05 3.40 16
14 N -0.71 -15.64 3.77 -47.06 -0.18 -15.82 16
15 C -0.24 -5.98 8.70 -15.06 -0.13 -6.11 16
16 H 0.07 1.75 6.75 -52.49 -0.35 1.39 16
17 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16
18 N -0.93 -26.20 13.07 55.49 0.73 -25.47 16
19 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16
20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16
21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
23 C -0.15 -2.66 4.83 -26.59 -0.13 -2.79 16
24 C 0.07 1.21 6.68 37.21 0.25 1.46 16
25 O -0.39 -6.80 10.77 -35.23 -0.38 -7.18 16
26 C 0.07 1.06 6.67 37.20 0.25 1.31 16
27 C -0.15 -2.41 4.80 -26.59 -0.13 -2.53 16
28 N -0.45 -7.40 9.45 -6.06 -0.06 -7.45 16
29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16
33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
35 H 0.06 0.41 6.48 -51.93 -0.34 0.07 16
36 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16
37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16
38 H 0.15 1.97 7.64 -52.49 -0.40 1.57 16
39 H 0.41 7.97 6.63 -40.82 -0.27 7.70 16
40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
41 H 0.07 1.50 7.54 -51.93 -0.39 1.10 16
42 H 0.39 9.14 6.72 -40.82 -0.27 8.87 16
43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16
44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
45 H 0.08 1.41 7.12 -51.93 -0.37 1.04 16
46 H 0.07 1.33 7.75 -51.93 -0.40 0.93 16
47 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16
48 H 0.06 1.03 7.09 -51.93 -0.37 0.67 16
49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
50 H 0.07 1.10 7.20 -51.93 -0.37 0.72 16
51 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
LS Contribution 404.84 15.07 6.10 6.10
Total: -1.00 -30.32 404.84 -9.09 -39.40
By element:
Atomic # 1 Polarization: 24.86 SS G_CDS: -8.08 Total: 16.78 kcal
Atomic # 6 Polarization: 3.47 SS G_CDS: -1.96 Total: 1.50 kcal
Atomic # 7 Polarization: -62.11 SS G_CDS: 0.18 Total: -61.93 kcal
Atomic # 8 Polarization: -18.64 SS G_CDS: -0.29 Total: -18.93 kcal
Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -30.32 -9.09 -39.40 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699879965.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.921 kcal
(2) G-P(sol) polarization free energy of solvation -30.320 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.325 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds