Wall clock time and date at job start Wed Apr 1 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47204 * 2 1 4 4 C 1.50703 * 109.47266 * 120.00145 * 2 1 3 5 5 C 1.38604 * 119.54788 * 275.00004 * 4 2 1 6 6 C 1.38587 * 119.34888 * 179.97438 * 5 4 2 7 7 C 1.38632 * 118.48834 * 0.02562 * 6 5 4 8 8 C 1.39266 * 119.06277 * 359.97438 * 7 6 5 9 9 C 1.48165 * 119.72263 * 179.97438 * 8 7 6 10 10 O 1.21512 * 120.00269 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99862 * 179.97438 * 9 8 7 12 12 C 1.46509 * 119.99884 * 179.72273 * 11 9 8 13 13 C 1.53000 * 109.47064 * 175.90782 * 12 11 9 14 14 N 1.46493 * 109.54237 * 305.06268 * 13 12 11 15 15 C 1.36936 * 119.99789 * 300.68777 * 14 13 12 16 16 H 1.08002 * 120.00558 * 354.08429 * 15 14 13 17 17 C 1.38817 * 119.99955 * 174.08351 * 15 14 13 18 18 N 1.31625 * 119.99824 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00002 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47208 * 60.00003 * 19 17 15 21 21 H 1.48509 * 109.47034 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47001 * 299.99558 * 19 17 15 23 23 C 1.53174 * 109.54341 * 184.88207 * 13 12 11 24 24 C 1.53097 * 109.15685 * 183.24387 * 23 13 12 25 25 O 1.42901 * 109.48883 * 57.47647 * 24 23 13 26 26 C 1.42902 * 114.09330 * 298.88567 * 25 24 23 27 27 C 1.53088 * 109.41588 * 61.16362 * 26 25 24 28 28 N 1.31501 * 119.55121 * 95.24787 * 4 2 1 29 29 H 1.08995 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47082 * 300.00082 * 1 2 3 31 31 H 1.08998 * 109.47172 * 59.99920 * 1 2 3 32 32 H 1.09004 * 109.47082 * 239.99917 * 2 1 3 33 33 H 1.09000 * 109.47336 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47470 * 299.99693 * 3 2 1 35 35 H 1.09001 * 109.47580 * 60.00271 * 3 2 1 36 36 H 1.08000 * 120.32369 * 0.02562 * 5 4 2 37 37 H 1.08002 * 120.75584 * 179.97438 * 6 5 4 38 38 H 1.08000 * 120.46832 * 180.02562 * 7 6 5 39 39 H 0.96996 * 120.00311 * 0.02562 * 11 9 8 40 40 H 1.09005 * 109.47079 * 295.90863 * 12 11 9 41 41 H 1.08997 * 109.46879 * 55.90426 * 12 11 9 42 42 H 0.97001 * 120.00271 * 120.69060 * 14 13 12 43 43 H 0.97002 * 119.99783 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.52401 * 303.06078 * 23 13 12 45 45 H 1.09001 * 109.52000 * 63.24567 * 23 13 12 46 46 H 1.09003 * 109.40858 * 297.49114 * 24 23 13 47 47 H 1.09005 * 109.49435 * 177.51401 * 24 23 13 48 48 H 1.09002 * 109.48469 * 301.17413 * 26 25 24 49 49 H 1.09006 * 109.48435 * 181.14814 * 26 25 24 50 50 H 1.08999 * 109.52311 * 182.48001 * 27 26 25 51 51 H 1.09004 * 109.57508 * 62.32228 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1611 -0.0099 2.4195 6 6 2.6230 -0.6675 3.5486 7 6 2.9424 -2.0126 3.4463 8 6 2.7883 -2.6531 2.2192 9 6 3.1258 -4.0902 2.0932 10 8 3.5355 -4.7050 3.0579 11 7 2.9783 -4.7157 0.9085 12 6 3.3177 -6.1353 0.7823 13 6 2.9651 -6.6209 -0.6251 14 7 1.5571 -6.3296 -0.9055 15 6 0.5769 -6.8559 -0.1073 16 1 0.8335 -7.5612 0.6694 17 6 -0.7468 -6.4829 -0.2962 18 7 -1.0598 -5.6238 -1.2430 19 14 -2.0839 -7.2004 0.7932 20 1 -1.8106 -6.8479 2.2096 21 1 -3.4014 -6.6461 0.3900 22 1 -2.1030 -8.6779 0.6456 23 6 3.2051 -8.1307 -0.7213 24 6 2.9274 -8.5932 -2.1541 25 8 3.7615 -7.8674 -3.0595 26 6 3.5457 -6.4549 -3.0468 27 6 3.8505 -5.9060 -1.6505 28 7 2.3472 -1.9853 1.1602 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9033 1.0378 2.4658 37 1 2.7325 -0.1437 4.4868 38 1 3.3047 -2.5564 4.3061 39 1 2.6515 -4.2249 0.1383 40 1 4.3852 -6.2705 0.9565 41 1 2.7541 -6.7103 1.5170 42 1 1.3191 -5.7639 -1.6567 43 1 -1.9847 -5.3629 -1.3748 44 1 4.2406 -8.3522 -0.4626 45 1 2.5378 -8.6501 -0.0336 46 1 1.8809 -8.4098 -2.3975 47 1 3.1390 -9.6590 -2.2398 48 1 2.5073 -6.2434 -3.3019 49 1 4.2029 -5.9801 -3.7754 50 1 3.6442 -4.8360 -1.6268 51 1 4.8994 -6.0802 -1.4106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699879965.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:20 Heat of formation + Delta-G solvation = -65.334363 kcal Electronic energy + Delta-G solvation = -32055.536881 eV Core-core repulsion = 27953.856990 eV Total energy + Delta-G solvation = -4101.679891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.77380 -40.88545 -39.88929 -37.34592 -36.44618 -35.20261 -34.06738 -33.36550 -32.00292 -31.36690 -30.95238 -28.49928 -27.98330 -26.00940 -25.47781 -24.85439 -24.42594 -23.45071 -21.98429 -21.02324 -20.15810 -19.17770 -18.84226 -17.87027 -17.20134 -17.14475 -16.83475 -16.54134 -16.40971 -16.32840 -15.89057 -15.77385 -15.51512 -15.35485 -15.14096 -14.80823 -14.72655 -14.23915 -14.08138 -13.80560 -13.69083 -13.53058 -13.28591 -13.19989 -12.93833 -12.85375 -12.78765 -12.71792 -12.42310 -12.29228 -12.13004 -12.07302 -11.80097 -11.73505 -11.54173 -11.31411 -11.15321 -10.93268 -10.91989 -10.46706 -10.33639 -10.15036 -9.85971 -8.98356 -7.91524 -5.17626 -0.35337 0.25079 1.41201 1.43052 1.47086 1.71387 2.19095 2.53778 2.83869 3.01492 3.05950 3.40764 3.61081 3.72431 3.83135 3.84066 3.97986 4.02480 4.07196 4.12683 4.16980 4.21704 4.29462 4.32484 4.44323 4.47510 4.58267 4.71069 4.73641 4.74620 4.80861 4.82218 4.86909 4.96952 4.99200 5.00014 5.02168 5.06406 5.11057 5.20004 5.25155 5.26217 5.31669 5.36978 5.43762 5.50140 5.59532 5.64531 6.29151 6.34797 6.48193 6.86862 7.17474 7.38585 8.07660 8.34368 9.30191 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.003895 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.674785 B = 7187.017393 C = 7880.330439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 C -0.138 4.138 4 C 0.120 3.880 5 C -0.139 4.139 6 C -0.071 4.071 7 C -0.129 4.129 8 C 0.057 3.943 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.676 5.676 12 C 0.122 3.878 13 C 0.186 3.814 14 N -0.711 5.711 15 C -0.215 4.215 16 H 0.065 0.935 17 C -0.060 4.060 18 N -0.955 5.955 19 Si 0.947 3.053 20 H -0.295 1.295 21 H -0.297 1.297 22 H -0.279 1.279 23 C -0.150 4.150 24 C 0.075 3.925 25 O -0.395 6.395 26 C 0.067 3.933 27 C -0.144 4.144 28 N -0.479 5.479 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.179 0.821 37 H 0.183 0.817 38 H 0.145 0.855 39 H 0.411 0.589 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.376 0.624 43 H 0.247 0.753 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.036 0.964 47 H 0.103 0.897 48 H 0.037 0.963 49 H 0.113 0.887 50 H 0.072 0.928 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 14.050 2.589 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.196 4.196 4 C -0.021 4.021 5 C -0.158 4.158 6 C -0.096 4.096 7 C -0.150 4.150 8 C -0.080 4.080 9 C 0.342 3.658 10 O -0.462 6.462 11 N -0.324 5.324 12 C -0.004 4.004 13 C 0.096 3.904 14 N -0.351 5.351 15 C -0.347 4.347 16 H 0.083 0.917 17 C -0.253 4.253 18 N -0.605 5.605 19 Si 0.778 3.222 20 H -0.223 1.223 21 H -0.223 1.223 22 H -0.205 1.205 23 C -0.190 4.190 24 C -0.001 4.001 25 O -0.314 6.314 26 C -0.009 4.009 27 C -0.182 4.182 28 N -0.191 5.191 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.197 0.803 37 H 0.200 0.800 38 H 0.163 0.837 39 H 0.248 0.752 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.210 0.790 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.121 0.879 48 H 0.055 0.945 49 H 0.131 0.869 50 H 0.090 0.910 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.117 12.915 2.453 16.588 hybrid contribution -1.678 -0.017 1.088 2.000 sum 8.438 12.898 3.541 15.815 Atomic orbital electron populations 1.21772 0.93569 1.00918 1.03355 1.20123 0.96138 0.96854 0.93435 1.21888 1.01252 0.92543 1.03882 1.21783 0.94602 0.88724 0.96959 1.22616 0.98022 1.03194 0.91969 1.22043 0.94372 0.92559 1.00672 1.22258 0.98780 0.96596 0.97409 1.21031 1.01302 0.93784 0.91871 1.18347 0.77884 0.86467 0.83107 1.90683 1.49354 1.67399 1.38785 1.45615 1.63505 1.11344 1.11923 1.21813 0.98781 0.80672 0.99176 1.20046 0.84985 0.93968 0.91451 1.42464 0.99445 1.59264 1.33976 1.19152 0.87278 1.18013 1.10285 0.91746 1.25196 0.98955 1.00710 1.00427 1.69753 1.17265 1.37976 1.35527 0.85621 0.79747 0.78268 0.78542 1.22261 1.22349 1.20487 1.22434 1.01735 0.96769 0.98061 1.22384 0.93712 0.95995 0.88047 1.87803 1.62403 1.18984 1.62176 1.22542 1.00716 0.81112 0.96576 1.22308 1.00240 1.00157 0.95462 1.67319 1.09926 1.10419 1.31450 0.95635 0.91194 0.90254 0.90813 0.92263 0.90527 0.90274 0.80330 0.79978 0.83685 0.75171 0.91189 0.94081 0.79024 0.94428 0.90112 0.91993 0.94591 0.87935 0.94500 0.86897 0.90984 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.18 71.98 0.66 -2.42 16 2 C -0.05 -0.99 3.23 -11.54 -0.04 -1.03 16 3 C -0.14 -1.81 8.62 71.98 0.62 -1.19 16 4 C 0.12 3.11 5.79 42.70 0.25 3.35 16 5 C -0.14 -2.59 9.18 22.44 0.21 -2.38 16 6 C -0.07 -1.35 10.17 22.45 0.23 -1.12 16 7 C -0.13 -3.59 9.63 22.61 0.22 -3.37 16 8 C 0.06 2.00 6.75 41.89 0.28 2.29 16 9 C 0.56 22.61 7.81 86.88 0.68 23.29 16 10 O -0.58 -25.86 16.32 -3.75 -0.06 -25.92 16 11 N -0.68 -26.82 5.15 -465.64 -2.40 -29.22 16 12 C 0.12 4.67 4.32 86.38 0.37 5.04 16 13 C 0.19 6.82 0.41 3.72 0.00 6.83 16 14 N -0.71 -32.29 3.77 -302.81 -1.14 -33.43 16 15 C -0.22 -11.25 8.70 84.03 0.73 -10.52 16 16 H 0.06 3.39 6.75 -2.91 -0.02 3.37 16 17 C -0.06 -3.33 5.50 84.86 0.47 -2.87 16 18 N -0.95 -55.99 13.07 21.65 0.28 -55.71 16 19 Si 0.95 46.76 29.55 68.60 2.03 48.79 16 20 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 21 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 23 C -0.15 -5.10 4.83 30.68 0.15 -4.95 16 24 C 0.08 2.54 6.68 72.01 0.48 3.02 16 25 O -0.39 -13.04 10.77 -148.98 -1.60 -14.65 16 26 C 0.07 2.06 6.67 72.01 0.48 2.54 16 27 C -0.14 -4.40 4.80 30.68 0.15 -4.26 16 28 N -0.48 -16.15 9.45 -173.08 -1.64 -17.79 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.72 6.48 -2.39 -0.02 0.70 16 36 H 0.18 1.84 6.30 -2.91 -0.02 1.82 16 37 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.15 3.92 7.64 -2.91 -0.02 3.90 16 39 H 0.41 16.62 6.63 -92.71 -0.61 16.00 16 40 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.04 1.81 7.54 -2.39 -0.02 1.79 16 42 H 0.38 18.55 6.72 -92.71 -0.62 17.93 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 45 H 0.06 2.29 7.12 -2.39 -0.02 2.27 16 46 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 47 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 48 H 0.04 1.30 7.09 -2.39 -0.02 1.29 16 49 H 0.11 2.78 8.14 -2.38 -0.02 2.76 16 50 H 0.07 2.21 7.20 -2.39 -0.02 2.20 16 51 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -69.67 404.84 1.11 -68.56 By element: Atomic # 1 Polarization: 47.41 SS G_CDS: -0.29 Total: 47.12 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 5.93 Total: 12.24 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -4.90 Total: -136.14 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -1.67 Total: -40.57 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -69.67 1.11 -68.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699879965.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.226 kcal (2) G-P(sol) polarization free energy of solvation -69.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds