Wall clock time and date at job start Wed Apr 1 2020 04:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46948 * 2 1 4 4 C 1.50697 * 109.47488 * 120.00304 * 2 1 3 5 5 C 1.38353 * 119.40784 * 275.00211 * 4 2 1 6 6 C 1.38336 * 119.46167 * 179.97438 * 5 4 2 7 7 C 1.39985 * 118.34587 * 0.02562 * 6 5 4 8 8 C 1.47529 * 120.59358 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99710 * 170.42010 * 8 7 6 10 10 N 1.34777 * 120.00079 * 350.41657 * 8 7 6 11 11 C 1.47422 * 125.64946 * 179.97438 * 10 8 7 12 12 C 1.54902 * 104.83296 * 204.16141 * 11 10 8 13 13 C 1.55158 * 101.58413 * 322.99073 * 12 11 10 14 14 C 1.47024 * 125.64941 * 0.02562 * 10 8 7 15 15 H 1.09006 * 109.87852 * 59.33420 * 14 10 8 16 16 C 1.53000 * 109.88274 * 298.32632 * 14 10 8 17 17 N 1.46500 * 109.47149 * 179.46704 * 16 14 10 18 18 C 1.46505 * 119.99674 * 264.90052 * 17 16 14 19 19 C 1.36932 * 120.00336 * 84.89512 * 17 16 14 20 20 H 1.08004 * 119.99605 * 354.42035 * 19 17 16 21 21 C 1.38811 * 120.00374 * 174.69263 * 19 17 16 22 22 N 1.31618 * 119.99678 * 4.82977 * 21 19 17 23 23 Si 1.86800 * 120.00166 * 184.83028 * 21 19 17 24 24 H 1.48502 * 109.46961 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46885 * 120.00006 * 23 21 19 26 26 H 1.48498 * 109.47091 * 240.00270 * 23 21 19 27 27 C 1.40279 * 118.80884 * 0.26813 * 7 6 5 28 28 O 1.35424 * 119.80096 * 179.71210 * 27 7 6 29 29 N 1.31876 * 119.40922 * 94.97288 * 4 2 1 30 30 H 1.09002 * 109.46940 * 299.99471 * 1 2 3 31 31 H 1.08997 * 109.47688 * 59.99689 * 1 2 3 32 32 H 1.08997 * 109.47484 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46940 * 240.00528 * 2 1 3 34 34 H 1.08998 * 109.47445 * 299.99888 * 3 2 1 35 35 H 1.09002 * 109.47381 * 60.00611 * 3 2 1 36 36 H 1.09004 * 109.46826 * 180.02562 * 3 2 1 37 37 H 1.08006 * 120.26959 * 0.02562 * 5 4 2 38 38 H 1.08008 * 120.82595 * 179.97438 * 6 5 4 39 39 H 1.09008 * 110.36262 * 323.00295 * 11 10 8 40 40 H 1.09001 * 110.36835 * 85.32101 * 11 10 8 41 41 H 1.09005 * 111.00593 * 81.06285 * 12 11 10 42 42 H 1.08997 * 111.00807 * 204.91421 * 12 11 10 43 43 H 1.09000 * 110.71543 * 277.14129 * 13 12 11 44 44 H 1.08997 * 110.72070 * 153.86631 * 13 12 11 45 45 H 1.08998 * 109.47335 * 59.46360 * 16 14 10 46 46 H 1.08997 * 109.47132 * 299.46327 * 16 14 10 47 47 H 1.09006 * 109.46880 * 244.35872 * 18 17 16 48 48 H 1.08990 * 109.47277 * 4.36231 * 18 17 16 49 49 H 1.08997 * 109.47071 * 124.36547 * 18 17 16 50 50 H 0.97001 * 119.99838 * 179.97438 * 22 21 19 51 51 H 0.96700 * 114.00463 * 89.99754 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1598 -0.0085 2.4158 6 6 2.6204 -0.6597 3.5460 7 6 2.9436 -2.0179 3.4452 8 6 3.4387 -2.7611 4.6196 9 8 3.5506 -3.9709 4.5705 10 7 3.7670 -2.0991 5.7467 11 6 4.2715 -2.7137 6.9881 12 6 3.9066 -1.7058 8.1063 13 6 4.1311 -0.3489 7.3882 14 6 3.6804 -0.6445 5.9422 15 1 2.6527 -0.3115 5.7962 16 6 4.6039 0.0694 4.9531 17 7 4.5011 1.5179 5.1471 18 6 3.5851 2.3047 4.3176 19 6 5.2609 2.1363 6.1038 20 1 5.8681 1.5471 6.7752 21 6 5.2465 3.5199 6.2144 22 7 4.4319 4.2315 5.4646 23 14 6.3833 4.3718 7.4275 24 1 7.1936 3.3548 8.1446 25 1 7.2854 5.2962 6.6949 26 1 5.5748 5.1416 8.4067 27 6 2.7932 -2.6585 2.2063 28 8 3.1055 -3.9706 2.0846 29 7 2.3422 -1.9903 1.1580 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.9010 1.0393 2.4585 38 1 2.7287 -0.1330 4.4827 39 1 3.7801 -3.6706 7.1645 40 1 5.3522 -2.8456 6.9341 41 1 2.8659 -1.8194 8.4103 42 1 4.5752 -1.8110 8.9607 43 1 5.1841 -0.0684 7.4143 44 1 3.5122 0.4301 7.8333 45 1 4.3096 -0.1826 3.9343 46 1 5.6328 -0.2477 5.1230 47 1 4.1574 3.0008 3.7043 48 1 3.0142 1.6368 3.6727 49 1 2.9022 2.8622 4.9587 50 1 4.4215 5.1984 5.5421 51 1 2.3669 -4.5689 2.2623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700358942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:27 Heat of formation + Delta-G solvation = 36.537332 kcal Electronic energy + Delta-G solvation = -32986.283600 eV Core-core repulsion = 28889.021198 eV Total energy + Delta-G solvation = -4097.262402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.24808 -39.54010 -37.96198 -36.97485 -35.65543 -34.99944 -33.18530 -31.54048 -31.05072 -29.67692 -28.97600 -27.23814 -26.23679 -25.66031 -24.75081 -23.32814 -22.76840 -21.37490 -20.72366 -20.54887 -19.33670 -18.14504 -17.34467 -17.06716 -16.68035 -16.13304 -15.66237 -15.31578 -15.10425 -14.76784 -14.49950 -14.32751 -14.00872 -13.59155 -13.49108 -13.29465 -13.09152 -12.92314 -12.70731 -12.51700 -12.39512 -12.08844 -11.95684 -11.78321 -11.66011 -11.48047 -11.30078 -11.21801 -11.00857 -10.93689 -10.91805 -10.83048 -10.68389 -10.49657 -10.16513 -10.11489 -9.92557 -9.69908 -9.22652 -9.17836 -8.79590 -8.69330 -8.40329 -7.04537 -5.75547 -3.20378 0.68403 1.25269 2.95781 3.11093 3.30749 3.38079 3.39621 3.55762 3.85828 4.32771 4.42053 4.58961 4.68019 4.88348 4.93789 5.01656 5.04668 5.10476 5.15101 5.18025 5.31991 5.42692 5.48403 5.51557 5.56305 5.57119 5.62611 5.70474 5.76329 5.78459 5.80066 5.90496 5.97632 6.03039 6.08810 6.14627 6.20727 6.26094 6.28086 6.41659 6.43592 6.51399 6.61145 6.65355 6.70407 7.50303 7.57880 7.59971 7.69866 7.81527 7.94608 8.24225 8.33647 9.13878 9.74644 10.16610 11.22876 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009251 B = 0.004706 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.868817 B = 5947.921255 C = 8521.640959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C -0.150 4.150 4 C 0.183 3.817 5 C -0.195 4.195 6 C -0.044 4.044 7 C -0.219 4.219 8 C 0.582 3.418 9 O -0.538 6.538 10 N -0.606 5.606 11 C 0.110 3.890 12 C -0.139 4.139 13 C -0.106 4.106 14 C 0.091 3.909 15 H 0.079 0.921 16 C 0.124 3.876 17 N -0.603 5.603 18 C 0.154 3.846 19 C -0.247 4.247 20 H 0.078 0.922 21 C -0.001 4.001 22 N -0.915 5.915 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.369 3.631 28 O -0.464 6.464 29 N -0.516 5.516 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.152 0.848 38 H 0.190 0.810 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.040 0.960 48 H 0.001 0.999 49 H 0.051 0.949 50 H 0.250 0.750 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.994 -8.445 -3.935 12.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.208 4.208 4 C 0.045 3.955 5 C -0.215 4.215 6 C -0.069 4.069 7 C -0.226 4.226 8 C 0.372 3.628 9 O -0.416 6.416 10 N -0.340 5.340 11 C -0.013 4.013 12 C -0.177 4.177 13 C -0.144 4.144 14 C -0.015 4.015 15 H 0.096 0.904 16 C -0.005 4.005 17 N -0.326 5.326 18 C 0.010 3.990 19 C -0.376 4.376 20 H 0.096 0.904 21 C -0.197 4.197 22 N -0.563 5.563 23 Si 0.736 3.264 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.189 3.811 28 O -0.271 6.271 29 N -0.236 5.236 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.169 0.831 38 H 0.206 0.794 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.019 0.981 49 H 0.069 0.931 50 H 0.061 0.939 51 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.475 -9.222 -4.932 12.855 hybrid contribution 0.414 0.843 1.542 1.806 sum -7.061 -8.379 -3.389 11.469 Atomic orbital electron populations 1.21800 0.93423 1.02197 1.02401 1.20138 0.96285 0.95750 0.94647 1.21958 1.01859 0.94255 1.02703 1.21196 0.91225 0.88155 0.94956 1.22123 1.03957 1.02461 0.92955 1.23618 0.88043 0.92587 1.02618 1.20947 1.10784 0.96078 0.94761 1.17460 0.77616 0.86414 0.81348 1.90746 1.54922 1.13328 1.82640 1.48535 1.64407 1.08477 1.12574 1.22190 0.99077 0.96903 0.83119 1.22878 1.01893 0.95729 0.97242 1.22594 1.03768 0.95881 0.92110 1.23143 1.00591 0.78545 0.99230 0.90375 1.21710 0.97516 0.85572 0.95721 1.43995 1.47667 0.99834 1.41105 1.21381 0.92457 0.91963 0.93155 1.19360 1.19592 0.89601 1.09045 0.90406 1.24849 0.99135 0.96414 0.99303 1.70210 1.38864 1.05221 1.41965 0.86156 0.80298 0.79673 0.80260 1.20479 1.21712 1.21774 1.19056 0.89787 0.86037 0.86200 1.84689 1.38734 1.11639 1.91995 1.67058 1.14815 1.09895 1.31798 0.92177 0.91738 0.92448 0.89184 0.91749 0.91499 0.91998 0.83086 0.79376 0.90775 0.91500 0.91120 0.90061 0.89536 0.89621 0.92171 0.93031 0.94190 0.98050 0.93089 0.93926 0.73967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.18 37.16 0.34 -0.95 16 2 C -0.05 -0.54 3.23 -91.77 -0.30 -0.83 16 3 C -0.15 -1.53 8.61 37.16 0.32 -1.21 16 4 C 0.18 2.55 5.79 -82.53 -0.48 2.07 16 5 C -0.20 -2.78 8.12 -39.50 -0.32 -3.10 16 6 C -0.04 -0.69 5.46 -38.89 -0.21 -0.91 16 7 C -0.22 -3.63 5.44 -104.69 -0.57 -4.20 16 8 C 0.58 10.17 7.63 -12.47 -0.10 10.08 16 9 O -0.54 -10.33 15.52 -16.25 -0.25 -10.58 16 10 N -0.61 -9.66 3.06 -164.25 -0.50 -10.17 16 11 C 0.11 1.50 6.91 -2.53 -0.02 1.49 16 12 C -0.14 -1.70 7.08 -24.59 -0.17 -1.87 16 13 C -0.11 -1.61 5.33 -24.90 -0.13 -1.75 16 14 C 0.09 1.47 2.41 -66.95 -0.16 1.31 16 15 H 0.08 1.28 6.04 -51.93 -0.31 0.96 16 16 C 0.12 2.32 4.39 -4.04 -0.02 2.30 16 17 N -0.60 -13.21 2.89 -181.12 -0.52 -13.73 16 18 C 0.15 3.34 8.69 59.85 0.52 3.86 16 19 C -0.25 -5.99 8.64 -15.06 -0.13 -6.12 16 20 H 0.08 1.83 6.16 -52.48 -0.32 1.51 16 21 C 0.00 -0.01 5.45 -17.43 -0.10 -0.11 16 22 N -0.92 -24.36 9.44 55.49 0.52 -23.83 16 23 Si 0.91 20.52 29.56 -169.99 -5.02 15.50 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.37 6.07 7.76 -16.61 -0.13 5.94 16 28 O -0.46 -7.28 11.71 -39.50 -0.46 -7.74 16 29 N -0.52 -8.12 10.28 -9.21 -0.09 -8.21 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.68 6.47 -51.93 -0.34 0.35 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.15 1.97 4.89 -52.48 -0.26 1.72 16 38 H 0.19 3.06 1.58 -52.51 -0.08 2.98 16 39 H 0.07 0.99 8.04 -51.92 -0.42 0.57 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 1.45 6.00 -51.93 -0.31 1.14 16 44 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.06 1.13 3.95 -52.45 -0.21 0.93 16 46 H 0.05 1.03 8.06 -51.93 -0.42 0.61 16 47 H 0.04 0.98 7.14 -51.93 -0.37 0.61 16 48 H 0.00 0.02 3.16 -51.93 -0.16 -0.14 16 49 H 0.05 1.21 6.94 -51.93 -0.36 0.85 16 50 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 51 H 0.40 4.55 9.06 45.56 0.41 4.97 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -29.90 381.12 -8.75 -38.66 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.51 Total: 8.38 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -1.65 Total: 5.98 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.60 Total: -55.94 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.71 Total: -18.32 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.90 -8.75 -38.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700358942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.194 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds