Wall clock time and date at job start Wed Apr 1 2020 04:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46948 * 2 1 4 4 C 1.50697 * 109.47488 * 120.00304 * 2 1 3 5 5 C 1.38353 * 119.40784 * 275.00211 * 4 2 1 6 6 C 1.38336 * 119.46167 * 179.97438 * 5 4 2 7 7 C 1.39985 * 118.34587 * 0.02562 * 6 5 4 8 8 C 1.47529 * 120.59358 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99710 * 170.42010 * 8 7 6 10 10 N 1.34777 * 120.00079 * 350.41657 * 8 7 6 11 11 C 1.47422 * 125.64946 * 179.97438 * 10 8 7 12 12 C 1.54902 * 104.83296 * 204.16141 * 11 10 8 13 13 C 1.55158 * 101.58413 * 322.99073 * 12 11 10 14 14 C 1.47024 * 125.64941 * 0.02562 * 10 8 7 15 15 H 1.09006 * 109.87852 * 59.33420 * 14 10 8 16 16 C 1.53000 * 109.88274 * 298.32632 * 14 10 8 17 17 N 1.46500 * 109.47149 * 179.46704 * 16 14 10 18 18 C 1.46505 * 119.99674 * 264.90052 * 17 16 14 19 19 C 1.36932 * 120.00336 * 84.89512 * 17 16 14 20 20 H 1.08004 * 119.99605 * 354.42035 * 19 17 16 21 21 C 1.38811 * 120.00374 * 174.69263 * 19 17 16 22 22 N 1.31618 * 119.99678 * 4.82977 * 21 19 17 23 23 Si 1.86800 * 120.00166 * 184.83028 * 21 19 17 24 24 H 1.48502 * 109.46961 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46885 * 120.00006 * 23 21 19 26 26 H 1.48498 * 109.47091 * 240.00270 * 23 21 19 27 27 C 1.40279 * 118.80884 * 0.26813 * 7 6 5 28 28 O 1.35424 * 119.80096 * 179.71210 * 27 7 6 29 29 N 1.31876 * 119.40922 * 94.97288 * 4 2 1 30 30 H 1.09002 * 109.46940 * 299.99471 * 1 2 3 31 31 H 1.08997 * 109.47688 * 59.99689 * 1 2 3 32 32 H 1.08997 * 109.47484 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46940 * 240.00528 * 2 1 3 34 34 H 1.08998 * 109.47445 * 299.99888 * 3 2 1 35 35 H 1.09002 * 109.47381 * 60.00611 * 3 2 1 36 36 H 1.09004 * 109.46826 * 180.02562 * 3 2 1 37 37 H 1.08006 * 120.26959 * 0.02562 * 5 4 2 38 38 H 1.08008 * 120.82595 * 179.97438 * 6 5 4 39 39 H 1.09008 * 110.36262 * 323.00295 * 11 10 8 40 40 H 1.09001 * 110.36835 * 85.32101 * 11 10 8 41 41 H 1.09005 * 111.00593 * 81.06285 * 12 11 10 42 42 H 1.08997 * 111.00807 * 204.91421 * 12 11 10 43 43 H 1.09000 * 110.71543 * 277.14129 * 13 12 11 44 44 H 1.08997 * 110.72070 * 153.86631 * 13 12 11 45 45 H 1.08998 * 109.47335 * 59.46360 * 16 14 10 46 46 H 1.08997 * 109.47132 * 299.46327 * 16 14 10 47 47 H 1.09006 * 109.46880 * 244.35872 * 18 17 16 48 48 H 1.08990 * 109.47277 * 4.36231 * 18 17 16 49 49 H 1.08997 * 109.47071 * 124.36547 * 18 17 16 50 50 H 0.97001 * 119.99838 * 179.97438 * 22 21 19 51 51 H 0.96700 * 114.00463 * 89.99754 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1598 -0.0085 2.4158 6 6 2.6204 -0.6597 3.5460 7 6 2.9436 -2.0179 3.4452 8 6 3.4387 -2.7611 4.6196 9 8 3.5506 -3.9709 4.5705 10 7 3.7670 -2.0991 5.7467 11 6 4.2715 -2.7137 6.9881 12 6 3.9066 -1.7058 8.1063 13 6 4.1311 -0.3489 7.3882 14 6 3.6804 -0.6445 5.9422 15 1 2.6527 -0.3115 5.7962 16 6 4.6039 0.0694 4.9531 17 7 4.5011 1.5179 5.1471 18 6 3.5851 2.3047 4.3176 19 6 5.2609 2.1363 6.1038 20 1 5.8681 1.5471 6.7752 21 6 5.2465 3.5199 6.2144 22 7 4.4319 4.2315 5.4646 23 14 6.3833 4.3718 7.4275 24 1 7.1936 3.3548 8.1446 25 1 7.2854 5.2962 6.6949 26 1 5.5748 5.1416 8.4067 27 6 2.7932 -2.6585 2.2063 28 8 3.1055 -3.9706 2.0846 29 7 2.3422 -1.9903 1.1580 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.9010 1.0393 2.4585 38 1 2.7287 -0.1330 4.4827 39 1 3.7801 -3.6706 7.1645 40 1 5.3522 -2.8456 6.9341 41 1 2.8659 -1.8194 8.4103 42 1 4.5752 -1.8110 8.9607 43 1 5.1841 -0.0684 7.4143 44 1 3.5122 0.4301 7.8333 45 1 4.3096 -0.1826 3.9343 46 1 5.6328 -0.2477 5.1230 47 1 4.1574 3.0008 3.7043 48 1 3.0142 1.6368 3.6727 49 1 2.9022 2.8622 4.9587 50 1 4.4215 5.1984 5.5421 51 1 2.3669 -4.5689 2.2623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700358942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:26 Heat of formation + Delta-G solvation = 17.580162 kcal Electronic energy + Delta-G solvation = -32987.105645 eV Core-core repulsion = 28889.021198 eV Total energy + Delta-G solvation = -4098.084447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.50832 -40.77944 -39.28472 -38.23723 -37.14923 -36.13434 -34.48507 -33.20135 -32.29861 -30.94507 -30.36547 -28.05277 -27.99297 -27.05447 -26.02917 -24.60284 -24.05981 -22.85108 -21.92526 -21.70412 -20.66947 -19.31675 -18.93618 -18.43765 -17.99213 -17.44297 -16.92290 -16.76247 -16.36755 -16.30359 -15.75663 -15.34341 -15.21467 -15.18410 -14.76866 -14.56813 -14.46984 -14.20551 -13.90877 -13.73725 -13.59127 -13.44017 -13.17658 -12.90262 -12.86509 -12.81063 -12.70036 -12.61871 -12.34643 -12.24623 -12.09359 -12.03906 -11.93317 -11.85083 -11.79246 -11.68094 -11.33800 -11.20121 -10.61572 -10.54307 -10.41982 -10.00764 -9.74252 -8.86178 -7.67779 -5.12902 -0.53185 0.03115 1.49658 1.53390 1.60160 1.66695 1.84747 2.40046 2.54299 2.64733 3.16302 3.40388 3.44293 3.49900 3.67998 3.75922 3.82149 3.89390 3.98189 4.05190 4.12998 4.21946 4.23529 4.35046 4.39994 4.42697 4.57634 4.61811 4.74601 4.83694 4.84778 4.87643 4.88997 4.96192 4.99431 5.03344 5.04595 5.05996 5.18836 5.20473 5.31973 5.36560 5.41191 5.43366 5.44011 5.64865 5.71520 5.93853 6.33335 6.39186 6.51186 6.77479 7.00093 7.23310 7.91567 8.29308 9.28936 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009251 B = 0.004706 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.868817 B = 5947.921255 C = 8521.640959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C -0.149 4.149 4 C 0.186 3.814 5 C -0.197 4.197 6 C -0.047 4.047 7 C -0.234 4.234 8 C 0.578 3.422 9 O -0.560 6.560 10 N -0.605 5.605 11 C 0.103 3.897 12 C -0.121 4.121 13 C -0.106 4.106 14 C 0.101 3.899 15 H 0.082 0.918 16 C 0.129 3.871 17 N -0.612 5.612 18 C 0.171 3.829 19 C -0.239 4.239 20 H 0.085 0.915 21 C -0.054 4.054 22 N -0.941 5.941 23 Si 0.959 3.041 24 H -0.267 1.267 25 H -0.302 1.302 26 H -0.295 1.295 27 C 0.363 3.637 28 O -0.475 6.475 29 N -0.527 5.527 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.164 0.836 38 H 0.183 0.817 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.007 0.993 48 H 0.037 0.963 49 H 0.028 0.972 50 H 0.242 0.758 51 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 -9.069 -3.702 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 C -0.206 4.206 4 C 0.048 3.952 5 C -0.216 4.216 6 C -0.072 4.072 7 C -0.240 4.240 8 C 0.368 3.632 9 O -0.440 6.440 10 N -0.337 5.337 11 C -0.018 4.018 12 C -0.159 4.159 13 C -0.144 4.144 14 C -0.004 4.004 15 H 0.100 0.900 16 C 0.001 3.999 17 N -0.336 5.336 18 C 0.027 3.973 19 C -0.369 4.369 20 H 0.103 0.897 21 C -0.247 4.247 22 N -0.591 5.591 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.230 1.230 26 H -0.222 1.222 27 C 0.183 3.817 28 O -0.285 6.285 29 N -0.246 5.246 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.181 0.819 38 H 0.199 0.801 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.026 0.974 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.052 0.948 51 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -8.129 -9.895 -4.674 13.632 hybrid contribution 0.607 0.948 1.377 1.778 sum -7.522 -8.947 -3.297 12.145 Atomic orbital electron populations 1.21788 0.91722 1.02244 1.03634 1.20254 0.97553 0.95748 0.93096 1.21963 1.00952 0.93853 1.03853 1.21736 0.89805 0.87677 0.95973 1.22265 1.03635 1.02970 0.92732 1.23527 0.88534 0.92360 1.02746 1.20939 1.11893 0.96437 0.94749 1.17634 0.77459 0.86271 0.81813 1.90723 1.56093 1.14140 1.83067 1.48558 1.63915 1.08260 1.13010 1.22393 0.99261 0.97601 0.82573 1.22836 1.03369 0.92661 0.97044 1.22511 1.02514 0.97555 0.91777 1.22840 0.99957 0.78590 0.99010 0.90022 1.21722 0.97400 0.84037 0.96694 1.44107 1.47586 1.01166 1.40719 1.21066 0.91682 0.91947 0.92600 1.19658 1.18786 0.89673 1.08757 0.89741 1.25467 1.00739 0.97266 1.01223 1.70396 1.40371 1.04720 1.43598 0.85303 0.78661 0.78625 0.78493 1.19170 1.22955 1.22225 1.19196 0.89717 0.86367 0.86387 1.84635 1.40021 1.11783 1.92025 1.67157 1.15262 1.10644 1.31565 0.91962 0.89538 0.92990 0.89064 0.89495 0.91520 0.93417 0.81903 0.80059 0.90064 0.91313 0.89780 0.87631 0.91037 0.90286 0.91996 0.94316 0.97407 0.94521 0.95372 0.94800 0.72121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.18 71.98 0.66 -1.53 16 2 C -0.05 -0.95 3.23 -11.54 -0.04 -0.99 16 3 C -0.15 -2.76 8.61 71.98 0.62 -2.14 16 4 C 0.19 4.97 5.79 42.58 0.25 5.21 16 5 C -0.20 -5.38 8.12 22.32 0.18 -5.20 16 6 C -0.05 -1.45 5.46 22.72 0.12 -1.32 16 7 C -0.23 -7.63 5.44 -19.91 -0.11 -7.73 16 8 C 0.58 19.85 7.63 86.69 0.66 20.51 16 9 O -0.56 -21.19 15.52 16.58 0.26 -20.93 16 10 N -0.60 -18.60 3.06 -791.84 -2.43 -21.03 16 11 C 0.10 2.64 6.91 86.85 0.60 3.24 16 12 C -0.12 -2.63 7.08 31.98 0.23 -2.40 16 13 C -0.11 -3.07 5.33 31.78 0.17 -2.90 16 14 C 0.10 3.19 2.41 45.34 0.11 3.30 16 15 H 0.08 2.58 6.04 -2.38 -0.01 2.57 16 16 C 0.13 4.79 4.39 86.38 0.38 5.17 16 17 N -0.61 -26.81 2.89 -726.94 -2.10 -28.92 16 18 C 0.17 7.46 8.69 127.77 1.11 8.57 16 19 C -0.24 -11.55 8.64 84.03 0.73 -10.82 16 20 H 0.08 3.91 6.16 -2.91 -0.02 3.89 16 21 C -0.05 -2.75 5.45 84.86 0.46 -2.28 16 22 N -0.94 -51.00 9.44 21.65 0.20 -50.80 16 23 Si 0.96 42.31 29.56 68.60 2.03 44.33 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 C 0.36 11.76 7.76 85.13 0.66 12.42 16 28 O -0.47 -14.73 11.71 -66.60 -0.78 -15.51 16 29 N -0.53 -16.10 10.28 -296.07 -3.04 -19.14 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.24 6.47 -2.39 -0.02 1.22 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.16 4.02 4.89 -2.91 -0.01 4.00 16 38 H 0.18 5.77 1.58 -2.93 0.00 5.76 16 39 H 0.08 2.00 8.04 -2.38 -0.02 1.98 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 41 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.11 1.83 8.14 -2.39 -0.02 1.82 16 43 H 0.07 2.31 6.00 -2.39 -0.01 2.29 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.06 2.31 3.95 -2.87 -0.01 2.30 16 46 H 0.04 1.54 8.06 -2.39 -0.02 1.52 16 47 H 0.01 0.37 7.14 -2.38 -0.02 0.36 16 48 H 0.04 1.30 3.16 -2.39 -0.01 1.29 16 49 H 0.03 1.35 6.94 -2.39 -0.02 1.33 16 50 H 0.24 13.00 8.31 -92.71 -0.77 12.23 16 51 H 0.42 9.31 9.06 -74.06 -0.67 8.64 16 Total: -1.00 -64.18 381.12 1.24 -62.93 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.31 Total: 27.96 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 6.79 Total: 21.10 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -7.37 Total: -119.89 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.52 Total: -36.44 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -64.18 1.24 -62.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700358942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.515 kcal (2) G-P(sol) polarization free energy of solvation -64.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds