Wall clock time and date at job start Wed Apr 1 2020 04:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47237 * 2 1 4 4 C 1.50708 * 109.47076 * 180.02562 * 3 2 1 5 5 C 1.38361 * 119.85196 * 270.25154 * 4 3 2 6 6 C 1.37955 * 120.14138 * 180.25817 * 5 4 3 7 7 C 1.39575 * 119.85263 * 359.49245 * 6 5 4 8 8 C 1.47848 * 120.14487 * 180.27853 * 7 6 5 9 9 O 1.21550 * 119.99883 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00150 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00008 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47072 * 179.97438 * 11 10 8 13 13 N 1.46899 * 109.47210 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00232 * 66.04557 * 13 12 11 15 15 C 1.46899 * 111.00006 * 190.00235 * 13 12 11 16 16 C 1.50696 * 109.47105 * 170.00069 * 15 13 12 17 17 O 1.21293 * 120.00129 * 359.97438 * 16 15 13 18 18 N 1.34775 * 120.00085 * 179.97438 * 16 15 13 19 19 C 1.37102 * 119.99997 * 179.97438 * 18 16 15 20 20 H 1.07995 * 120.00364 * 359.97438 * 19 18 16 21 21 C 1.38957 * 119.99749 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99655 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 119.99939 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47380 * 90.00525 * 23 21 19 25 25 H 1.48501 * 109.46940 * 209.99889 * 23 21 19 26 26 H 1.48493 * 109.47504 * 329.99842 * 23 21 19 27 27 C 1.39579 * 119.71401 * 0.25207 * 7 6 5 28 28 C 1.37958 * 119.84937 * 0.02562 * 27 7 6 29 29 H 1.08993 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47067 * 299.99975 * 1 2 3 31 31 H 1.09008 * 109.46994 * 59.99721 * 1 2 3 32 32 H 1.09004 * 109.47067 * 240.00025 * 2 1 3 33 33 H 1.08994 * 109.47476 * 120.00173 * 2 1 3 34 34 H 1.08997 * 109.47366 * 60.00289 * 3 2 1 35 35 H 1.09000 * 109.47611 * 300.00081 * 3 2 1 36 36 H 1.07998 * 119.92846 * 0.02562 * 5 4 3 37 37 H 1.08002 * 120.07573 * 179.77464 * 6 5 4 38 38 H 0.96996 * 119.99601 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.47252 * 300.00049 * 11 10 8 40 40 H 1.09007 * 109.46893 * 60.00137 * 11 10 8 41 41 H 1.09005 * 109.46987 * 299.99854 * 12 11 10 42 42 H 1.08998 * 109.47290 * 60.00029 * 12 11 10 43 43 H 1.08998 * 109.47196 * 59.99628 * 14 13 12 44 44 H 1.08993 * 109.47630 * 180.02562 * 14 13 12 45 45 H 1.09006 * 109.47096 * 300.00405 * 14 13 12 46 46 H 1.08999 * 109.46776 * 289.99697 * 15 13 12 47 47 H 1.08996 * 109.47336 * 49.99332 * 15 13 12 48 48 H 0.96998 * 120.00139 * 359.97438 * 18 16 15 49 49 H 0.96999 * 119.99439 * 179.97438 * 22 21 19 50 50 H 1.07997 * 120.07575 * 180.02562 * 27 7 6 51 51 H 1.08006 * 119.92205 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2363 1.4370 1.1991 6 6 5.6158 1.4423 1.2055 7 6 6.3162 1.4425 -0.0018 8 6 7.7947 1.4419 -0.0025 9 8 8.4029 1.4418 1.0499 10 7 8.4681 1.4426 -1.1700 11 6 9.9331 1.4426 -1.1706 12 6 10.4425 1.4429 -2.6133 13 7 11.9115 1.4423 -2.6139 14 6 12.4377 0.1886 -2.0577 15 6 12.4374 1.6806 -3.9646 16 6 13.9238 1.9173 -3.8904 17 8 14.4894 1.8906 -2.8177 18 7 14.6248 2.1587 -5.0159 19 6 15.9770 2.3746 -4.9483 20 1 16.4805 2.3516 -3.9931 21 6 16.6996 2.6240 -6.1087 22 7 17.9957 2.8314 -6.0438 23 14 15.8287 2.6645 -7.7607 24 1 15.3707 4.0482 -8.0451 25 1 16.7661 2.2249 -8.8253 26 1 14.6573 1.7527 -7.7253 27 6 5.6148 1.4426 -1.2086 28 6 4.2352 1.4431 -1.2009 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.6931 1.4323 2.1325 37 1 6.1527 1.4417 2.1426 38 1 7.9827 1.4431 -2.0097 39 1 10.2966 2.3323 -0.6564 40 1 10.2966 0.5523 -0.6574 41 1 10.0789 0.5529 -3.1271 42 1 10.0789 2.3329 -3.1268 43 1 12.0876 -0.6507 -2.6586 44 1 13.5272 0.2149 -2.0695 45 1 12.0885 0.0715 -1.0317 46 1 12.2389 0.8106 -4.5906 47 1 11.9510 2.5562 -4.3947 48 1 14.1726 2.1798 -5.8738 49 1 18.5001 3.0052 -6.8539 50 1 6.1508 1.4423 -2.1461 51 1 3.6913 1.4436 -2.1340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714558618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:45 Heat of formation + Delta-G solvation = -72.539178 kcal Electronic energy + Delta-G solvation = -28568.470573 eV Core-core repulsion = 24466.478258 eV Total energy + Delta-G solvation = -4101.992315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32114 -40.50738 -39.68660 -38.21445 -36.08634 -35.95838 -35.58310 -33.74018 -32.42660 -31.93876 -30.61304 -29.19998 -27.76358 -26.90565 -25.29137 -23.83849 -23.49770 -22.32330 -22.17364 -21.27976 -21.15344 -20.16278 -19.02732 -17.77584 -17.51269 -16.92034 -16.81683 -16.55613 -16.44253 -16.20728 -16.05870 -15.62071 -15.46126 -15.25229 -15.03096 -14.84140 -14.65484 -14.54539 -14.35345 -14.30846 -14.12520 -13.71181 -13.64384 -13.11797 -13.09063 -12.94423 -12.85893 -12.58840 -12.55173 -12.39248 -12.14989 -12.03952 -12.01048 -11.95970 -11.94096 -11.46910 -11.45543 -11.13178 -10.36918 -10.25487 -10.21458 -9.95782 -9.66809 -9.24427 -8.39418 -6.00371 -0.17585 0.41465 1.31330 1.37731 1.46366 1.79610 1.92630 1.98772 2.25159 2.75146 2.85355 3.16594 3.28338 3.62664 3.78504 3.84291 3.91060 4.01056 4.05650 4.13701 4.18843 4.26594 4.35682 4.42674 4.44840 4.46066 4.48056 4.54270 4.61995 4.62621 4.78716 4.83216 4.86854 4.93522 4.96548 5.03631 5.06464 5.20674 5.26004 5.27463 5.29364 5.34226 5.40284 5.49299 5.54871 5.64344 5.88154 5.93739 5.99904 6.14215 6.46677 6.62154 6.91082 7.13849 7.42423 8.00822 8.78519 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.001422 C = 0.001362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.173782 B =19686.115132 C =20548.251140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.083 4.083 4 C -0.055 4.055 5 C -0.130 4.130 6 C -0.075 4.075 7 C -0.159 4.159 8 C 0.553 3.447 9 O -0.587 6.587 10 N -0.707 5.707 11 C 0.127 3.873 12 C 0.054 3.946 13 N -0.543 5.543 14 C 0.023 3.977 15 C 0.058 3.942 16 C 0.449 3.551 17 O -0.608 6.608 18 N -0.591 5.591 19 C -0.329 4.329 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.228 1.228 27 C -0.077 4.077 28 C -0.126 4.126 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.417 0.583 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.127 0.873 48 H 0.390 0.610 49 H 0.278 0.722 50 H 0.153 0.847 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -41.552 -5.336 2.845 41.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.120 4.120 4 C -0.055 4.055 5 C -0.148 4.148 6 C -0.094 4.094 7 C -0.162 4.162 8 C 0.342 3.658 9 O -0.468 6.468 10 N -0.360 5.360 11 C 0.003 3.997 12 C -0.074 4.074 13 N -0.268 5.268 14 C -0.125 4.125 15 C -0.073 4.073 16 C 0.237 3.763 17 O -0.492 6.492 18 N -0.233 5.233 19 C -0.458 4.458 20 H 0.071 0.929 21 C -0.214 4.214 22 N -0.578 5.578 23 Si 0.786 3.214 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.151 1.151 27 C -0.095 4.095 28 C -0.144 4.144 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.160 0.840 37 H 0.137 0.863 38 H 0.255 0.745 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.145 0.855 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.171 0.829 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -40.363 -4.934 4.489 40.911 hybrid contribution 0.552 -0.485 -1.176 1.387 sum -39.811 -5.419 3.313 40.315 Atomic orbital electron populations 1.21782 0.94940 1.01994 1.02295 1.21488 0.96291 0.95523 1.02229 1.20763 0.88946 0.97984 1.04284 1.20449 0.97137 0.95005 0.92906 1.21220 0.92937 1.01430 0.99245 1.21316 0.94880 0.95849 0.97391 1.19863 0.91204 1.09248 0.95899 1.18740 0.88236 0.75406 0.83430 1.90769 1.71017 1.51995 1.33020 1.45618 1.06975 1.74532 1.08854 1.21155 0.78944 1.01835 0.97788 1.22248 0.86199 1.03750 0.95158 1.61280 1.07477 1.36585 1.21481 1.22466 1.01199 0.88957 0.99858 1.21835 0.90479 1.04313 0.90700 1.20974 0.90482 0.81293 0.83598 1.90534 1.72756 1.55789 1.30135 1.42011 1.07255 1.65650 1.08423 1.19002 0.83367 1.47784 0.95628 0.92901 1.26137 0.96119 0.95955 1.03207 1.69818 1.08339 1.48501 1.31129 0.85343 0.79363 0.80309 0.76349 1.18122 1.20225 1.15142 1.21563 0.95091 0.96073 0.96812 1.21341 0.93541 1.00553 0.98932 0.92623 0.92445 0.92087 0.91792 0.92444 0.90130 0.89373 0.83982 0.86290 0.74466 0.92655 0.92459 0.91546 0.87735 0.94138 0.92804 0.91171 0.89768 0.85532 0.77413 0.91210 0.82925 0.82669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 71.98 0.71 0.01 16 2 C -0.12 -0.68 5.92 30.59 0.18 -0.50 16 3 C -0.08 -0.46 5.34 29.85 0.16 -0.30 16 4 C -0.05 -0.53 5.14 -19.80 -0.10 -0.63 16 5 C -0.13 -1.67 9.68 22.23 0.22 -1.45 16 6 C -0.08 -1.37 9.60 22.53 0.22 -1.16 16 7 C -0.16 -2.87 5.87 -20.09 -0.12 -2.99 16 8 C 0.55 13.09 7.77 86.79 0.67 13.76 16 9 O -0.59 -19.63 16.35 -3.87 -0.06 -19.69 16 10 N -0.71 -12.40 5.51 -465.97 -2.57 -14.97 16 11 C 0.13 2.83 5.60 86.38 0.48 3.31 16 12 C 0.05 1.00 5.07 86.30 0.44 1.44 16 13 N -0.54 -15.71 4.50 -927.08 -4.17 -19.88 16 14 C 0.02 0.71 8.96 127.69 1.14 1.85 16 15 C 0.06 1.66 5.45 85.56 0.47 2.12 16 16 C 0.45 19.98 7.47 87.66 0.66 20.64 16 17 O -0.61 -33.79 13.91 -3.07 -0.04 -33.83 16 18 N -0.59 -27.45 5.09 -306.98 -1.56 -29.01 16 19 C -0.33 -19.24 10.16 84.04 0.85 -18.39 16 20 H 0.05 3.72 7.39 -2.91 -0.02 3.69 16 21 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 22 N -0.94 -56.73 13.96 21.67 0.30 -56.42 16 23 Si 0.97 38.16 27.74 68.60 1.90 40.07 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 25 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 26 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 27 C -0.08 -0.83 9.54 22.53 0.21 -0.61 16 28 C -0.13 -1.08 9.68 22.23 0.22 -0.86 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 35 H 0.09 0.30 8.08 -2.39 -0.02 0.28 16 36 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.12 2.47 7.65 -2.91 -0.02 2.45 16 38 H 0.42 3.91 6.51 -92.71 -0.60 3.31 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.46 6.55 -2.38 -0.02 1.44 16 41 H 0.07 0.91 8.12 -2.38 -0.02 0.89 16 42 H 0.10 1.47 7.93 -2.39 -0.02 1.45 16 43 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 2.15 5.82 -2.39 -0.01 2.14 16 45 H 0.07 2.03 6.47 -2.38 -0.02 2.01 16 46 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 47 H 0.13 2.80 7.93 -2.39 -0.02 2.78 16 48 H 0.39 14.70 5.76 -92.71 -0.53 14.16 16 49 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 50 H 0.15 0.70 6.41 -2.91 -0.02 0.68 16 51 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -86.35 416.69 0.43 -85.92 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -0.25 Total: 31.99 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 6.88 Total: 15.84 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -8.00 Total: -120.29 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -0.11 Total: -53.52 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.90 Total: 40.07 kcal Total: -86.35 0.43 -85.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714558618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.383 kcal (2) G-P(sol) polarization free energy of solvation -86.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds