Wall clock time and date at job start Wed Apr 1 2020 05:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47307 * 2 1 4 4 C 1.53001 * 109.46861 * 119.99423 * 2 1 3 5 5 C 1.50699 * 109.47366 * 239.99507 * 2 1 3 6 6 C 1.38626 * 120.32350 * 179.72013 * 5 2 1 7 7 C 1.38591 * 118.48701 * 179.78177 * 6 5 2 8 8 C 1.39307 * 119.05547 * 0.49722 * 7 6 5 9 9 C 1.48176 * 119.72018 * 179.76610 * 8 7 6 10 10 O 1.21506 * 120.00120 * 347.74378 * 9 8 7 11 11 N 1.34783 * 119.99721 * 167.73980 * 9 8 7 12 12 C 1.47145 * 120.98280 * 358.63655 * 11 9 8 13 13 C 1.53296 * 108.38811 * 230.51216 * 12 11 9 14 14 O 1.42966 * 109.21856 * 307.70069 * 13 12 11 15 15 C 1.42963 * 114.16793 * 62.58211 * 14 13 12 16 16 H 1.09004 * 109.51539 * 57.33865 * 15 14 13 17 17 C 1.52999 * 109.51479 * 177.44167 * 15 14 13 18 18 N 1.46503 * 109.46971 * 300.00108 * 17 15 14 19 19 C 1.36935 * 119.99580 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00497 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99758 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99926 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00184 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47027 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47260 * 119.99756 * 23 21 19 26 26 H 1.48502 * 109.47218 * 240.00105 * 23 21 19 27 27 C 1.47154 * 120.97796 * 178.35508 * 11 9 8 28 28 N 1.32718 * 120.55637 * 359.74668 * 8 7 6 29 29 C 1.31514 * 121.64245 * 359.97438 * 28 8 7 30 30 H 1.09001 * 109.46689 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47125 * 60.00258 * 1 2 3 32 32 H 1.09004 * 109.47231 * 300.00308 * 1 2 3 33 33 H 1.09000 * 109.47246 * 59.99183 * 3 2 1 34 34 H 1.08992 * 109.47533 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46592 * 299.99987 * 3 2 1 36 36 H 1.09001 * 109.47253 * 60.00610 * 4 2 1 37 37 H 1.09004 * 109.47402 * 179.97438 * 4 2 1 38 38 H 1.08992 * 109.47786 * 300.00224 * 4 2 1 39 39 H 1.08002 * 120.75540 * 0.02562 * 6 5 2 40 40 H 1.07995 * 120.47255 * 180.21989 * 7 6 5 41 41 H 1.09000 * 109.68212 * 350.24154 * 12 11 9 42 42 H 1.09006 * 109.67800 * 110.75198 * 12 11 9 43 43 H 1.08994 * 109.51265 * 67.62050 * 13 12 11 44 44 H 1.08994 * 109.51209 * 187.78263 * 13 12 11 45 45 H 1.09009 * 109.46899 * 59.99789 * 17 15 14 46 46 H 1.08999 * 109.47398 * 179.97438 * 17 15 14 47 47 H 0.96998 * 119.99786 * 359.97438 * 18 17 15 48 48 H 0.96999 * 120.00346 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.67923 * 249.21227 * 27 11 9 50 50 H 1.08997 * 109.67897 * 9.76894 * 27 11 9 51 51 H 1.08001 * 119.54928 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 3.3939 -0.8359 -1.4593 7 6 3.8138 -1.5006 -2.6006 8 6 2.8583 -2.0075 -3.4785 9 6 3.2909 -2.7161 -4.7058 10 8 4.4517 -2.6631 -5.0608 11 7 2.3966 -3.4196 -5.4284 12 6 0.9920 -3.5230 -5.0023 13 6 0.5919 -5.0028 -5.0102 14 8 0.9130 -5.5703 -6.2826 15 6 2.3083 -5.5579 -6.5937 16 1 2.8592 -6.0885 -5.8171 17 6 2.5373 -6.2437 -7.9421 18 7 2.0654 -7.6289 -7.8718 19 6 2.1687 -8.4438 -8.9675 20 1 2.5977 -8.0653 -9.8834 21 6 1.7221 -9.7564 -8.9007 22 7 1.1997 -10.2179 -7.7842 23 14 1.8623 -10.8678 -10.3955 24 1 2.4798 -10.1144 -11.5164 25 1 2.7085 -12.0417 -10.0619 26 1 0.5096 -11.3308 -10.7968 27 6 2.7949 -4.1018 -6.6699 28 7 1.5638 -1.8614 -3.2246 29 6 1.1380 -1.2400 -2.1466 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 -1.7488 1.2494 37 1 3.1300 -0.7216 1.2492 38 1 1.6766 -0.2074 2.1393 39 1 4.1110 -0.4284 -0.7620 40 1 4.8668 -1.6199 -2.8087 41 1 0.8829 -3.1185 -3.9961 42 1 0.3573 -2.9668 -5.6923 43 1 1.1366 -5.5314 -4.2280 44 1 -0.4797 -5.0911 -4.8322 45 1 1.9875 -5.7115 -8.7185 46 1 3.6012 -6.2335 -8.1789 47 1 1.6805 -7.9689 -7.0490 48 1 0.8873 -11.1350 -7.7376 49 1 2.3385 -3.6035 -7.5252 50 1 3.8802 -4.0809 -6.7683 51 1 0.0766 -1.1401 -1.9737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717169820.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:31 Heat of formation + Delta-G solvation = -15.258658 kcal Electronic energy + Delta-G solvation = -30631.261882 eV Core-core repulsion = 26531.753437 eV Total energy + Delta-G solvation = -4099.508445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.38831 -39.91222 -38.27080 -37.28778 -35.01655 -34.32573 -32.81198 -32.13647 -31.09019 -29.97848 -28.19315 -27.97073 -27.81044 -26.00137 -24.48904 -23.77266 -23.23263 -22.38141 -20.91465 -20.10959 -19.89158 -17.74519 -17.35184 -17.03246 -16.32093 -16.11762 -15.85162 -15.59240 -15.21885 -15.10353 -14.87287 -14.45633 -14.43862 -14.31313 -14.00396 -13.83708 -13.78318 -13.23334 -13.10523 -13.01440 -12.83120 -12.63018 -12.56555 -12.34167 -12.24410 -12.01452 -11.62077 -11.58940 -11.45613 -11.27014 -10.89684 -10.82124 -10.76717 -10.46640 -10.39272 -10.23832 -9.99411 -9.79219 -9.65751 -9.42519 -9.11655 -8.81681 -8.40744 -6.82930 -5.67600 -2.95916 0.27264 0.77133 2.49649 2.77056 3.45434 3.49171 3.54265 3.56905 3.69567 3.98658 4.10381 4.14487 4.33093 4.39984 4.43311 4.59225 4.64422 4.72491 4.86451 4.96773 5.06626 5.08161 5.17400 5.20378 5.25041 5.29171 5.32401 5.33122 5.36803 5.42496 5.44780 5.51927 5.55665 5.65057 5.69237 5.72917 5.73658 5.82371 5.87539 5.96595 5.98190 6.08509 6.24246 6.35025 6.53793 6.64723 6.77307 7.20267 7.36119 7.60011 7.77540 7.99176 8.50604 9.62262 10.20365 10.56609 11.55348 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.001951 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.657501 B =14345.612704 C =14866.588411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.101 4.101 6 C -0.076 4.076 7 C -0.106 4.106 8 C 0.080 3.920 9 C 0.568 3.432 10 O -0.536 6.536 11 N -0.589 5.589 12 C 0.033 3.967 13 C 0.044 3.956 14 O -0.360 6.360 15 C 0.076 3.924 16 H 0.062 0.938 17 C 0.163 3.837 18 N -0.726 5.726 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.082 3.918 28 N -0.445 5.445 29 C 0.091 3.909 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.101 0.899 45 H 0.029 0.971 46 H 0.035 0.965 47 H 0.388 0.612 48 H 0.253 0.747 49 H 0.080 0.920 50 H 0.101 0.899 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 26.607 21.314 34.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 C -0.197 4.197 4 C -0.198 4.198 5 C -0.103 4.103 6 C -0.101 4.101 7 C -0.127 4.127 8 C -0.057 4.057 9 C 0.355 3.645 10 O -0.413 6.413 11 N -0.320 5.320 12 C -0.089 4.089 13 C -0.034 4.034 14 O -0.278 6.278 15 C 0.017 3.983 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.370 5.370 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.041 4.041 28 N -0.156 5.156 29 C -0.067 4.067 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.222 0.778 48 H 0.063 0.937 49 H 0.098 0.902 50 H 0.119 0.881 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.500 26.144 20.190 33.036 hybrid contribution 0.567 -0.377 0.176 0.704 sum 0.067 25.766 20.367 32.844 Atomic orbital electron populations 1.22009 0.93529 1.02525 1.02609 1.19524 0.96224 0.95141 0.91960 1.21913 1.01260 0.94199 1.02367 1.21916 1.01268 1.00530 0.96066 1.21062 0.94135 0.98085 0.97056 1.21472 0.95557 0.96544 0.96567 1.22092 1.01670 0.95613 0.93275 1.21190 0.89526 0.99075 0.95948 1.17895 0.85013 0.79133 0.82462 1.90781 1.17482 1.62954 1.70125 1.48003 1.10441 1.49366 1.24202 1.23854 0.80322 0.97975 1.06768 1.23000 1.01402 0.92063 0.86888 1.88140 1.23608 1.81189 1.34832 1.22830 0.82691 0.93114 0.99686 0.92045 1.20631 0.97189 0.87182 0.91509 1.42220 1.74072 1.06233 1.14479 1.19287 1.33504 0.92223 0.91792 0.91083 1.24750 1.01748 0.97370 0.97290 1.69692 1.47141 1.15828 1.25408 0.86101 0.77137 0.80760 0.82107 1.20560 1.21953 1.21920 1.22514 1.02614 0.93323 0.85608 1.67507 1.15564 1.13188 1.19355 1.23059 1.00891 0.93469 0.89312 0.91812 0.91894 0.91759 0.91840 0.92306 0.92271 0.92186 0.92304 0.91829 0.84119 0.83309 0.82747 0.90988 0.93419 0.88056 0.95369 0.94716 0.77827 0.93665 0.90187 0.88077 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 7.14 37.16 0.27 -0.26 16 2 C -0.03 -0.12 0.86 -155.66 -0.13 -0.25 16 3 C -0.14 -0.53 8.29 37.16 0.31 -0.23 16 4 C -0.14 -0.56 8.29 37.16 0.31 -0.25 16 5 C -0.10 -0.65 4.77 -104.36 -0.50 -1.15 16 6 C -0.08 -0.52 8.84 -39.31 -0.35 -0.87 16 7 C -0.11 -1.02 9.63 -39.05 -0.38 -1.39 16 8 C 0.08 0.94 6.60 -83.00 -0.55 0.39 16 9 C 0.57 8.45 7.68 -12.18 -0.09 8.35 16 10 O -0.54 -9.26 15.86 5.36 0.08 -9.17 16 11 N -0.59 -8.69 3.01 -173.01 -0.52 -9.21 16 12 C 0.03 0.43 6.17 -3.54 -0.02 0.41 16 13 C 0.04 0.64 6.99 37.31 0.26 0.91 16 14 O -0.36 -6.86 10.13 -35.23 -0.36 -7.21 16 15 C 0.08 1.40 2.88 -26.36 -0.08 1.32 16 16 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 17 C 0.16 3.52 5.96 -4.04 -0.02 3.50 16 18 N -0.73 -19.62 5.49 -59.91 -0.33 -19.95 16 19 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 20 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 22 N -0.93 -29.29 13.06 55.49 0.72 -28.56 16 23 Si 0.91 23.13 29.55 -169.99 -5.02 18.11 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 27 C 0.08 1.30 5.96 -3.31 -0.02 1.28 16 28 N -0.45 -4.56 6.09 -9.80 -0.06 -4.62 16 29 C 0.09 0.68 10.15 -17.57 -0.18 0.50 16 30 H 0.06 0.22 7.53 -51.93 -0.39 -0.17 16 31 H 0.06 0.21 7.53 -51.93 -0.39 -0.18 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.06 0.21 7.43 -51.93 -0.39 -0.17 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.22 7.46 -51.93 -0.39 -0.16 16 38 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.14 0.63 7.24 -52.49 -0.38 0.25 16 40 H 0.15 1.39 7.69 -52.49 -0.40 0.98 16 41 H 0.16 1.77 3.92 -88.11 -0.35 1.43 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.39 11.15 7.54 -40.82 -0.31 10.85 16 48 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.10 1.62 7.07 -51.93 -0.37 1.25 16 51 H 0.17 0.85 5.91 -52.49 -0.31 0.54 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -35.26 403.38 -9.11 -44.37 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.29 Total: 5.56 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.42 Total: 4.62 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.19 Total: -62.34 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.27 Total: -16.39 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.26 -9.11 -44.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717169820.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.108 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds