Wall clock time and date at job start Wed Apr 1 2020 05:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47307 * 2 1 4 4 C 1.53001 * 109.46861 * 119.99423 * 2 1 3 5 5 C 1.50699 * 109.47366 * 239.99507 * 2 1 3 6 6 C 1.38626 * 120.32350 * 179.72013 * 5 2 1 7 7 C 1.38591 * 118.48701 * 179.78177 * 6 5 2 8 8 C 1.39307 * 119.05547 * 0.49722 * 7 6 5 9 9 C 1.48176 * 119.72018 * 179.76610 * 8 7 6 10 10 O 1.21506 * 120.00120 * 347.74378 * 9 8 7 11 11 N 1.34783 * 119.99721 * 167.73980 * 9 8 7 12 12 C 1.47145 * 120.98280 * 358.63655 * 11 9 8 13 13 C 1.53296 * 108.38811 * 230.51216 * 12 11 9 14 14 O 1.42966 * 109.21856 * 307.70069 * 13 12 11 15 15 C 1.42963 * 114.16793 * 62.58211 * 14 13 12 16 16 H 1.09004 * 109.51539 * 57.33865 * 15 14 13 17 17 C 1.52999 * 109.51479 * 177.44167 * 15 14 13 18 18 N 1.46503 * 109.46971 * 300.00108 * 17 15 14 19 19 C 1.36935 * 119.99580 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00497 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99758 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99926 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00184 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47027 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47260 * 119.99756 * 23 21 19 26 26 H 1.48502 * 109.47218 * 240.00105 * 23 21 19 27 27 C 1.47154 * 120.97796 * 178.35508 * 11 9 8 28 28 N 1.32718 * 120.55637 * 359.74668 * 8 7 6 29 29 C 1.31514 * 121.64245 * 359.97438 * 28 8 7 30 30 H 1.09001 * 109.46689 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47125 * 60.00258 * 1 2 3 32 32 H 1.09004 * 109.47231 * 300.00308 * 1 2 3 33 33 H 1.09000 * 109.47246 * 59.99183 * 3 2 1 34 34 H 1.08992 * 109.47533 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46592 * 299.99987 * 3 2 1 36 36 H 1.09001 * 109.47253 * 60.00610 * 4 2 1 37 37 H 1.09004 * 109.47402 * 179.97438 * 4 2 1 38 38 H 1.08992 * 109.47786 * 300.00224 * 4 2 1 39 39 H 1.08002 * 120.75540 * 0.02562 * 6 5 2 40 40 H 1.07995 * 120.47255 * 180.21989 * 7 6 5 41 41 H 1.09000 * 109.68212 * 350.24154 * 12 11 9 42 42 H 1.09006 * 109.67800 * 110.75198 * 12 11 9 43 43 H 1.08994 * 109.51265 * 67.62050 * 13 12 11 44 44 H 1.08994 * 109.51209 * 187.78263 * 13 12 11 45 45 H 1.09009 * 109.46899 * 59.99789 * 17 15 14 46 46 H 1.08999 * 109.47398 * 179.97438 * 17 15 14 47 47 H 0.96998 * 119.99786 * 359.97438 * 18 17 15 48 48 H 0.96999 * 120.00346 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.67923 * 249.21227 * 27 11 9 50 50 H 1.08997 * 109.67897 * 9.76894 * 27 11 9 51 51 H 1.08001 * 119.54928 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 3.3939 -0.8359 -1.4593 7 6 3.8138 -1.5006 -2.6006 8 6 2.8583 -2.0075 -3.4785 9 6 3.2909 -2.7161 -4.7058 10 8 4.4517 -2.6631 -5.0608 11 7 2.3966 -3.4196 -5.4284 12 6 0.9920 -3.5230 -5.0023 13 6 0.5919 -5.0028 -5.0102 14 8 0.9130 -5.5703 -6.2826 15 6 2.3083 -5.5579 -6.5937 16 1 2.8592 -6.0885 -5.8171 17 6 2.5373 -6.2437 -7.9421 18 7 2.0654 -7.6289 -7.8718 19 6 2.1687 -8.4438 -8.9675 20 1 2.5977 -8.0653 -9.8834 21 6 1.7221 -9.7564 -8.9007 22 7 1.1997 -10.2179 -7.7842 23 14 1.8623 -10.8678 -10.3955 24 1 2.4798 -10.1144 -11.5164 25 1 2.7085 -12.0417 -10.0619 26 1 0.5096 -11.3308 -10.7968 27 6 2.7949 -4.1018 -6.6699 28 7 1.5638 -1.8614 -3.2246 29 6 1.1380 -1.2400 -2.1466 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 -1.7488 1.2494 37 1 3.1300 -0.7216 1.2492 38 1 1.6766 -0.2074 2.1393 39 1 4.1110 -0.4284 -0.7620 40 1 4.8668 -1.6199 -2.8087 41 1 0.8829 -3.1185 -3.9961 42 1 0.3573 -2.9668 -5.6923 43 1 1.1366 -5.5314 -4.2280 44 1 -0.4797 -5.0911 -4.8322 45 1 1.9875 -5.7115 -8.7185 46 1 3.6012 -6.2335 -8.1789 47 1 1.6805 -7.9689 -7.0490 48 1 0.8873 -11.1350 -7.7376 49 1 2.3385 -3.6035 -7.5252 50 1 3.8802 -4.0809 -6.7683 51 1 0.0766 -1.1401 -1.9737 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717169820.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:30 Heat of formation + Delta-G solvation = -38.133036 kcal Electronic energy + Delta-G solvation = -30632.253789 eV Core-core repulsion = 26531.753437 eV Total energy + Delta-G solvation = -4100.500353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.19670 -40.93544 -39.51044 -37.84565 -36.68009 -35.83063 -33.96361 -33.43495 -32.15654 -31.43260 -29.34878 -28.43793 -28.08377 -27.52633 -25.57142 -24.94935 -24.22609 -23.81768 -22.40801 -21.12386 -20.41920 -19.26052 -18.68546 -18.20688 -17.55454 -17.03144 -16.88195 -16.72836 -16.57380 -16.05879 -15.91267 -15.76463 -15.33857 -15.26125 -15.04661 -14.73177 -14.61434 -14.55677 -14.42788 -14.20644 -13.96466 -13.72670 -13.29004 -13.15456 -12.91064 -12.83541 -12.79941 -12.62060 -12.50525 -12.27046 -12.08148 -12.02481 -11.91092 -11.87460 -11.71422 -11.67327 -11.40218 -11.21010 -10.97769 -10.88404 -10.11476 -9.99844 -9.62972 -9.01985 -7.94486 -5.24470 -0.47521 0.14689 1.46977 1.49090 1.53029 1.59307 1.67946 2.55886 2.67523 2.73476 2.92321 3.38997 3.46562 3.52581 3.58757 3.74403 3.88145 3.90341 3.97724 4.00572 4.08983 4.10194 4.19496 4.24835 4.34332 4.40285 4.45099 4.56803 4.65493 4.70326 4.78067 4.81112 4.82225 4.87450 4.91141 4.94390 4.97485 5.05925 5.07174 5.07841 5.14867 5.19374 5.28872 5.37206 5.45458 5.47890 5.50429 5.67752 6.14580 6.22064 6.27509 6.55520 6.90285 7.32579 8.06019 8.31623 9.29566 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.001951 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.657501 B =14345.612704 C =14866.588411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.087 4.087 6 C -0.070 4.070 7 C -0.110 4.110 8 C 0.052 3.948 9 C 0.564 3.436 10 O -0.570 6.570 11 N -0.594 5.594 12 C 0.042 3.958 13 C 0.040 3.960 14 O -0.388 6.388 15 C 0.089 3.911 16 H 0.046 0.954 17 C 0.161 3.839 18 N -0.740 5.740 19 C -0.247 4.247 20 H 0.079 0.921 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.980 3.020 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.091 3.909 28 N -0.458 5.458 29 C 0.089 3.911 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.168 0.832 40 H 0.145 0.855 41 H 0.175 0.825 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.124 0.876 45 H 0.031 0.969 46 H 0.045 0.955 47 H 0.375 0.625 48 H 0.251 0.749 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.041 28.570 22.651 36.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.089 4.089 6 C -0.096 4.096 7 C -0.131 4.131 8 C -0.084 4.084 9 C 0.353 3.647 10 O -0.450 6.450 11 N -0.325 5.325 12 C -0.080 4.080 13 C -0.038 4.038 14 O -0.307 6.307 15 C 0.030 3.970 16 H 0.064 0.936 17 C 0.034 3.966 18 N -0.383 5.383 19 C -0.378 4.378 20 H 0.097 0.903 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.808 3.192 24 H -0.189 1.189 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.032 4.032 28 N -0.169 5.169 29 C -0.069 4.069 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.186 0.814 40 H 0.163 0.837 41 H 0.190 0.810 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.142 0.858 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.207 0.793 48 H 0.060 0.940 49 H 0.107 0.893 50 H 0.115 0.885 51 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.088 28.153 21.520 35.452 hybrid contribution 0.713 -0.852 -0.089 1.115 sum -0.375 27.300 21.431 34.709 Atomic orbital electron populations 1.22043 0.92755 1.02847 1.03275 1.19579 0.96867 0.95210 0.90866 1.21926 1.01494 0.93629 1.02701 1.21932 1.01489 1.00187 0.96221 1.21384 0.93792 0.96522 0.97247 1.21760 0.96484 0.95490 0.95827 1.22153 1.01196 0.95846 0.93886 1.20804 0.90754 1.01168 0.95666 1.18417 0.84492 0.78731 0.83096 1.90743 1.18809 1.64248 1.71200 1.48104 1.11273 1.49261 1.23852 1.23966 0.79266 0.96704 1.08064 1.23268 1.02723 0.92887 0.84872 1.88079 1.23477 1.82095 1.37082 1.22536 0.82846 0.94281 0.97384 0.93553 1.20773 0.97361 0.84941 0.93543 1.42408 1.74237 1.08135 1.13472 1.19726 1.32715 0.92827 0.92567 0.90285 1.25664 1.02044 0.99013 1.00400 1.69860 1.48571 1.16027 1.27644 0.84981 0.76888 0.78462 0.78839 1.18862 1.21890 1.21925 1.22279 1.02282 0.91793 0.86842 1.67241 1.14788 1.14209 1.20647 1.23517 1.02303 0.92661 0.88463 0.91671 0.91630 0.90814 0.90711 0.92013 0.92795 0.92881 0.92034 0.90697 0.81419 0.83731 0.80953 0.90427 0.93892 0.85823 0.95097 0.93714 0.79340 0.93996 0.89332 0.88513 0.79124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 7.14 71.98 0.51 -0.09 16 2 C -0.02 -0.14 0.86 -52.93 -0.05 -0.18 16 3 C -0.14 -0.64 8.29 71.98 0.60 -0.05 16 4 C -0.14 -0.71 8.29 71.98 0.60 -0.11 16 5 C -0.09 -0.90 4.77 -19.70 -0.09 -0.99 16 6 C -0.07 -0.82 8.84 22.45 0.20 -0.62 16 7 C -0.11 -2.04 9.63 22.61 0.22 -1.82 16 8 C 0.05 1.20 6.60 41.91 0.28 1.48 16 9 C 0.56 17.08 7.68 86.88 0.67 17.75 16 10 O -0.57 -20.37 15.86 -3.74 -0.06 -20.43 16 11 N -0.59 -17.70 3.01 -819.57 -2.47 -20.17 16 12 C 0.04 1.04 6.17 86.36 0.53 1.58 16 13 C 0.04 1.14 6.99 72.08 0.50 1.64 16 14 O -0.39 -15.05 10.13 -148.98 -1.51 -16.56 16 15 C 0.09 3.36 2.88 30.84 0.09 3.45 16 16 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 17 C 0.16 7.07 5.96 86.38 0.51 7.58 16 18 N -0.74 -40.90 5.49 -343.44 -1.89 -42.78 16 19 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 20 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 21 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 22 N -0.97 -62.16 13.06 21.65 0.28 -61.88 16 23 Si 0.98 47.89 29.55 68.60 2.03 49.92 16 24 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 27 C 0.09 2.95 5.96 86.50 0.52 3.46 16 28 N -0.46 -8.79 6.09 -184.91 -1.13 -9.91 16 29 C 0.09 1.14 10.15 84.82 0.86 2.00 16 30 H 0.06 0.26 7.53 -2.39 -0.02 0.24 16 31 H 0.06 0.24 7.53 -2.39 -0.02 0.22 16 32 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 33 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.06 0.26 7.43 -2.39 -0.02 0.24 16 35 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 0.29 7.46 -2.38 -0.02 0.27 16 38 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.17 1.01 7.24 -2.91 -0.02 0.99 16 40 H 0.14 2.73 7.69 -2.91 -0.02 2.70 16 41 H 0.18 3.77 3.92 -73.83 -0.29 3.48 16 42 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 45 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.37 22.31 7.54 -92.71 -0.70 21.61 16 48 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 49 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 50 H 0.10 3.19 7.07 -2.39 -0.02 3.17 16 51 H 0.19 1.39 5.91 -2.91 -0.02 1.37 16 Total: -1.00 -77.16 403.38 2.46 -74.70 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.04 Total: 30.05 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 7.25 Total: 17.06 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -5.20 Total: -134.74 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.57 Total: -36.99 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -77.16 2.46 -74.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717169820.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.564 kcal (2) G-P(sol) polarization free energy of solvation -77.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds