Wall clock time and date at job start Wed Apr 1 2020 04:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46814 * 2 1 4 4 C 1.50696 * 109.47203 * 119.99571 * 2 1 3 5 5 C 1.38631 * 120.32244 * 119.97911 * 4 2 1 6 6 C 1.38589 * 118.48718 * 180.02562 * 5 4 2 7 7 C 1.39309 * 119.05906 * 0.02562 * 6 5 4 8 8 C 1.48174 * 119.72244 * 179.97438 * 7 6 5 9 9 O 1.21510 * 119.99918 * 338.60693 * 8 7 6 10 10 N 1.34773 * 120.00113 * 158.60957 * 8 7 6 11 11 C 1.46925 * 120.63223 * 0.02562 * 10 8 7 12 12 C 1.52761 * 109.00974 * 233.58570 * 11 10 8 13 13 C 1.53035 * 109.38466 * 305.58638 * 12 11 10 14 14 C 1.53044 * 109.53544 * 61.23649 * 13 12 11 15 15 C 1.53004 * 109.49615 * 178.68334 * 14 13 12 16 16 O 1.42904 * 109.47234 * 184.83901 * 15 14 13 17 17 N 1.46503 * 109.52293 * 58.60946 * 14 13 12 18 18 C 1.36938 * 119.99707 * 180.14280 * 17 14 13 19 19 H 1.07994 * 120.00230 * 359.97438 * 18 17 14 20 20 C 1.38816 * 119.99501 * 179.97438 * 18 17 14 21 21 N 1.31626 * 119.99555 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00259 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47175 * 89.99981 * 22 20 18 24 24 H 1.48499 * 109.47345 * 210.00074 * 22 20 18 25 25 H 1.48499 * 109.47461 * 330.00000 * 22 20 18 26 26 C 1.46925 * 120.63175 * 180.29385 * 10 8 7 27 27 N 1.32717 * 120.55601 * 359.97438 * 7 6 5 28 28 C 1.31523 * 121.64206 * 0.02562 * 27 7 6 29 29 H 1.08994 * 109.47095 * 300.00293 * 1 2 3 30 30 H 1.08996 * 109.47076 * 60.00292 * 1 2 3 31 31 H 1.08997 * 109.46793 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47575 * 239.99875 * 2 1 3 33 33 H 1.08996 * 109.47061 * 299.99718 * 3 2 1 34 34 H 1.08994 * 109.47529 * 59.99972 * 3 2 1 35 35 H 1.09001 * 109.46467 * 179.97438 * 3 2 1 36 36 H 1.07996 * 120.75562 * 0.02562 * 5 4 2 37 37 H 1.08004 * 120.46966 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.58672 * 353.41542 * 11 10 8 39 39 H 1.08997 * 109.58879 * 113.84536 * 11 10 8 40 40 H 1.08995 * 109.56568 * 185.54631 * 12 11 10 41 41 H 1.09009 * 109.36093 * 65.49523 * 12 11 10 42 42 H 1.08998 * 109.46154 * 301.21917 * 13 12 11 43 43 H 1.08999 * 109.46473 * 181.25628 * 13 12 11 44 44 H 1.08997 * 109.47344 * 304.83982 * 15 14 13 45 45 H 1.09007 * 109.47065 * 64.83981 * 15 14 13 46 46 H 0.96698 * 113.99993 * 180.02562 * 16 15 14 47 47 H 0.96996 * 120.00185 * 0.14050 * 17 14 13 48 48 H 0.96994 * 119.99496 * 179.97438 * 21 20 18 49 49 H 1.09007 * 109.58595 * 246.15421 * 26 10 8 50 50 H 1.08999 * 109.58458 * 6.43438 * 26 10 8 51 51 H 1.07999 * 119.54914 * 180.27709 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8294 -1.8383 1.1111 6 6 3.2698 -2.4619 2.2678 7 6 2.8978 -1.9367 3.5033 8 6 3.3599 -2.5920 4.7493 9 8 3.7116 -3.7550 4.7297 10 7 3.3900 -1.8983 5.9044 11 6 2.9673 -0.4917 5.9441 12 6 4.0820 0.3454 6.5688 13 6 4.4517 -0.2389 7.9341 14 6 4.9620 -1.6708 7.7568 15 6 5.3622 -2.2426 9.1183 16 8 5.9429 -3.5360 8.9398 17 7 6.1252 -1.6692 6.8661 18 6 6.7527 -2.8466 6.5574 19 1 6.3904 -3.7762 6.9708 20 6 7.8546 -2.8451 5.7131 21 7 8.4574 -3.9769 5.4160 22 14 8.4809 -1.2374 4.9976 23 1 9.4926 -0.6494 5.9120 24 1 9.1006 -1.4933 3.6726 25 1 7.3474 -0.2911 4.8393 26 6 3.8517 -2.5324 7.1467 27 7 2.1330 -0.8544 3.5737 28 6 1.7012 -0.2430 2.4922 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 3.1010 -2.2223 0.1390 37 1 3.8926 -3.3425 2.2121 38 1 2.7722 -0.1400 4.9310 39 1 2.0633 -0.3987 6.5459 40 1 3.7408 1.3731 6.6932 41 1 4.9556 0.3280 5.9170 42 1 3.5717 -0.2440 8.5772 43 1 5.2315 0.3705 8.3909 44 1 6.0877 -1.5808 9.5913 45 1 4.4788 -2.3252 9.7516 46 1 6.2206 -3.9596 9.7635 47 1 6.4509 -0.8343 6.4951 48 1 9.2271 -3.9759 4.8258 49 1 3.0211 -2.6091 7.8485 50 1 4.2376 -3.5279 6.9272 51 1 1.0842 0.6381 2.5888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724908124.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:10 Heat of formation + Delta-G solvation = -13.151301 kcal Electronic energy + Delta-G solvation = -32636.864366 eV Core-core repulsion = 28537.447303 eV Total energy + Delta-G solvation = -4099.417063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.83402 -39.41357 -37.69017 -36.02906 -35.65620 -33.81781 -32.49676 -32.02964 -31.07636 -30.37930 -29.10529 -27.46872 -25.94028 -25.25491 -23.98237 -23.68985 -23.13479 -21.57956 -20.71827 -20.02806 -18.38462 -17.72802 -17.13937 -16.86118 -16.21756 -15.62839 -15.52894 -15.10280 -14.88434 -14.56363 -14.39390 -14.14466 -14.04457 -13.92810 -13.64631 -13.35544 -13.26468 -13.18246 -13.00668 -12.62185 -12.52169 -12.48122 -12.32225 -11.96214 -11.72260 -11.52432 -11.40680 -11.23660 -11.11609 -10.88508 -10.81887 -10.59094 -10.53870 -10.12019 -9.90072 -9.85458 -9.64368 -9.34678 -9.01354 -8.89131 -8.87317 -8.70003 -7.97567 -7.03538 -5.46642 -2.80750 0.74396 1.18121 3.09812 3.42943 3.45743 3.48032 3.54700 3.94526 4.19590 4.40299 4.48790 4.75375 4.78676 4.81403 4.84817 4.88929 5.03108 5.12718 5.18789 5.29378 5.29758 5.31961 5.41387 5.49668 5.51554 5.53426 5.58643 5.68113 5.73187 5.84631 5.89240 5.90283 5.91173 5.92083 5.99175 6.04909 6.08962 6.14828 6.18537 6.20548 6.32502 6.37745 6.59893 6.68079 6.68810 6.93308 7.20769 7.69116 8.01350 8.35007 8.47627 8.73460 8.76093 9.52007 10.18808 10.34426 11.72321 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.003849 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.339377 B = 7273.048288 C = 8045.131526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C -0.146 4.146 4 C -0.117 4.117 5 C -0.079 4.079 6 C -0.106 4.106 7 C 0.089 3.911 8 C 0.568 3.432 9 O -0.515 6.515 10 N -0.574 5.574 11 C 0.079 3.921 12 C -0.135 4.135 13 C -0.119 4.119 14 C 0.195 3.805 15 C 0.076 3.924 16 O -0.529 6.529 17 N -0.729 5.729 18 C -0.200 4.200 19 H 0.117 0.883 20 C -0.003 4.003 21 N -0.937 5.937 22 Si 0.867 3.133 23 H -0.290 1.290 24 H -0.295 1.295 25 H -0.284 1.284 26 C 0.109 3.891 27 N -0.448 5.448 28 C 0.091 3.909 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.135 0.865 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.026 0.974 46 H 0.352 0.648 47 H 0.357 0.643 48 H 0.252 0.748 49 H 0.049 0.951 50 H 0.108 0.892 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 12.211 -5.184 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.203 4.203 4 C -0.119 4.119 5 C -0.105 4.105 6 C -0.127 4.127 7 C -0.048 4.048 8 C 0.353 3.647 9 O -0.390 6.390 10 N -0.305 5.305 11 C -0.044 4.044 12 C -0.173 4.173 13 C -0.157 4.157 14 C 0.102 3.898 15 C -0.005 4.005 16 O -0.332 6.332 17 N -0.371 5.371 18 C -0.330 4.330 19 H 0.134 0.866 20 C -0.196 4.196 21 N -0.587 5.587 22 Si 0.699 3.301 23 H -0.217 1.217 24 H -0.222 1.222 25 H -0.211 1.211 26 C -0.015 4.015 27 N -0.159 5.159 28 C -0.067 4.067 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.197 0.803 47 H 0.191 0.809 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.126 0.874 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.758 11.765 -5.010 21.883 hybrid contribution 1.123 0.953 -0.711 1.635 sum -16.635 12.718 -5.721 21.708 Atomic orbital electron populations 1.21868 0.93959 1.02221 1.02174 1.20099 0.96130 0.96146 0.94818 1.21877 1.01527 0.94766 1.02174 1.21014 0.98056 0.96343 0.96481 1.21528 0.95622 0.94325 0.99009 1.22186 0.98423 1.00547 0.91536 1.21418 0.96207 0.92618 0.94566 1.17712 0.78605 0.86058 0.82302 1.90834 1.47381 1.16107 1.84638 1.47576 1.62882 1.11950 1.08095 1.22622 0.95338 0.80662 1.05730 1.21859 0.99918 0.98445 0.97098 1.21691 1.00679 0.96047 0.97328 1.19910 0.88226 0.92089 0.89560 1.22645 0.94778 0.85951 0.97152 1.87042 1.82307 1.30738 1.33084 1.42818 1.32032 1.06793 1.55499 1.19411 1.06264 0.87108 1.20208 0.86559 1.24599 0.99022 0.95142 1.00839 1.69684 1.23993 1.23669 1.41395 0.86814 0.78607 0.85686 0.79013 1.21706 1.22223 1.21085 1.22165 0.95345 1.00100 0.83889 1.67605 1.09963 1.06978 1.31385 1.22680 0.97524 0.99220 0.87318 0.92237 0.92119 0.92423 0.90113 0.92099 0.92221 0.92343 0.84315 0.83235 0.84822 0.92402 0.91491 0.91414 0.91561 0.91795 0.94492 0.95632 0.80318 0.80947 0.93739 0.93290 0.87421 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.01 37.16 0.33 -0.58 16 2 C -0.05 -0.39 3.11 -91.77 -0.29 -0.68 16 3 C -0.15 -0.99 9.01 37.16 0.33 -0.66 16 4 C -0.12 -1.21 4.80 -104.36 -0.50 -1.71 16 5 C -0.08 -0.94 9.79 -39.31 -0.39 -1.32 16 6 C -0.11 -1.67 9.63 -39.05 -0.38 -2.05 16 7 C 0.09 1.55 6.46 -83.01 -0.54 1.01 16 8 C 0.57 11.96 7.62 -12.18 -0.09 11.87 16 9 O -0.52 -12.88 15.94 5.36 0.09 -12.80 16 10 N -0.57 -10.98 2.90 -174.01 -0.50 -11.48 16 11 C 0.08 1.22 5.96 -3.93 -0.02 1.20 16 12 C -0.13 -2.02 5.90 -26.84 -0.16 -2.18 16 13 C -0.12 -1.81 4.77 -26.69 -0.13 -1.93 16 14 C 0.20 3.74 0.68 -131.69 -0.09 3.65 16 15 C 0.08 1.34 6.09 37.16 0.23 1.57 16 16 O -0.53 -10.81 10.05 -35.23 -0.35 -11.16 16 17 N -0.73 -17.49 4.55 -47.11 -0.21 -17.70 16 18 C -0.20 -5.79 8.55 -15.06 -0.13 -5.92 16 19 H 0.12 3.71 5.50 -52.49 -0.29 3.42 16 20 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 21 N -0.94 -31.07 13.97 55.49 0.78 -30.30 16 22 Si 0.87 23.26 27.73 -169.99 -4.71 18.55 16 23 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 24 H -0.30 -8.11 7.11 56.52 0.40 -7.71 16 25 H -0.28 -7.22 6.52 56.52 0.37 -6.85 16 26 C 0.11 2.17 4.91 -3.70 -0.02 2.15 16 27 N -0.45 -6.46 6.35 -9.80 -0.06 -6.52 16 28 C 0.09 1.02 9.90 -17.57 -0.17 0.85 16 29 H 0.06 0.36 7.41 -51.93 -0.38 -0.03 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.38 7.40 -51.93 -0.38 0.00 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.14 1.27 8.00 -52.49 -0.42 0.85 16 37 H 0.15 2.49 7.79 -52.48 -0.41 2.08 16 38 H 0.14 2.03 3.97 -79.76 -0.32 1.71 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.22 6.75 -51.92 -0.35 0.87 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.35 5.44 9.12 45.56 0.42 5.86 16 47 H 0.36 8.62 4.29 -40.82 -0.18 8.45 16 48 H 0.25 8.05 8.31 -40.82 -0.34 7.71 16 49 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.11 2.63 5.83 -51.93 -0.30 2.33 16 51 H 0.16 1.28 7.12 -52.49 -0.37 0.91 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -37.56 392.89 -8.38 -45.94 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -7.22 Total: 14.47 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -2.10 Total: 5.08 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -0.01 Total: -66.00 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.27 Total: -23.96 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.71 Total: 18.55 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.56 -8.38 -45.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724908124.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.791 kcal (2) G-P(sol) polarization free energy of solvation -37.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds