Wall clock time and date at job start Wed Apr 1 2020 04:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46814 * 2 1 4 4 C 1.50696 * 109.47203 * 119.99571 * 2 1 3 5 5 C 1.38631 * 120.32244 * 119.97911 * 4 2 1 6 6 C 1.38589 * 118.48718 * 180.02562 * 5 4 2 7 7 C 1.39309 * 119.05906 * 0.02562 * 6 5 4 8 8 C 1.48174 * 119.72244 * 179.97438 * 7 6 5 9 9 O 1.21510 * 119.99918 * 338.60693 * 8 7 6 10 10 N 1.34773 * 120.00113 * 158.60957 * 8 7 6 11 11 C 1.46925 * 120.63223 * 0.02562 * 10 8 7 12 12 C 1.52761 * 109.00974 * 233.58570 * 11 10 8 13 13 C 1.53035 * 109.38466 * 305.58638 * 12 11 10 14 14 C 1.53044 * 109.53544 * 61.23649 * 13 12 11 15 15 C 1.53004 * 109.49615 * 178.68334 * 14 13 12 16 16 O 1.42904 * 109.47234 * 184.83901 * 15 14 13 17 17 N 1.46503 * 109.52293 * 58.60946 * 14 13 12 18 18 C 1.36938 * 119.99707 * 180.14280 * 17 14 13 19 19 H 1.07994 * 120.00230 * 359.97438 * 18 17 14 20 20 C 1.38816 * 119.99501 * 179.97438 * 18 17 14 21 21 N 1.31626 * 119.99555 * 180.02562 * 20 18 17 22 22 Si 1.86791 * 120.00259 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47175 * 89.99981 * 22 20 18 24 24 H 1.48499 * 109.47345 * 210.00074 * 22 20 18 25 25 H 1.48499 * 109.47461 * 330.00000 * 22 20 18 26 26 C 1.46925 * 120.63175 * 180.29385 * 10 8 7 27 27 N 1.32717 * 120.55601 * 359.97438 * 7 6 5 28 28 C 1.31523 * 121.64206 * 0.02562 * 27 7 6 29 29 H 1.08994 * 109.47095 * 300.00293 * 1 2 3 30 30 H 1.08996 * 109.47076 * 60.00292 * 1 2 3 31 31 H 1.08997 * 109.46793 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47575 * 239.99875 * 2 1 3 33 33 H 1.08996 * 109.47061 * 299.99718 * 3 2 1 34 34 H 1.08994 * 109.47529 * 59.99972 * 3 2 1 35 35 H 1.09001 * 109.46467 * 179.97438 * 3 2 1 36 36 H 1.07996 * 120.75562 * 0.02562 * 5 4 2 37 37 H 1.08004 * 120.46966 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.58672 * 353.41542 * 11 10 8 39 39 H 1.08997 * 109.58879 * 113.84536 * 11 10 8 40 40 H 1.08995 * 109.56568 * 185.54631 * 12 11 10 41 41 H 1.09009 * 109.36093 * 65.49523 * 12 11 10 42 42 H 1.08998 * 109.46154 * 301.21917 * 13 12 11 43 43 H 1.08999 * 109.46473 * 181.25628 * 13 12 11 44 44 H 1.08997 * 109.47344 * 304.83982 * 15 14 13 45 45 H 1.09007 * 109.47065 * 64.83981 * 15 14 13 46 46 H 0.96698 * 113.99993 * 180.02562 * 16 15 14 47 47 H 0.96996 * 120.00185 * 0.14050 * 17 14 13 48 48 H 0.96994 * 119.99496 * 179.97438 * 21 20 18 49 49 H 1.09007 * 109.58595 * 246.15421 * 26 10 8 50 50 H 1.08999 * 109.58458 * 6.43438 * 26 10 8 51 51 H 1.07999 * 119.54914 * 180.27709 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8294 -1.8383 1.1111 6 6 3.2698 -2.4619 2.2678 7 6 2.8978 -1.9367 3.5033 8 6 3.3599 -2.5920 4.7493 9 8 3.7116 -3.7550 4.7297 10 7 3.3900 -1.8983 5.9044 11 6 2.9673 -0.4917 5.9441 12 6 4.0820 0.3454 6.5688 13 6 4.4517 -0.2389 7.9341 14 6 4.9620 -1.6708 7.7568 15 6 5.3622 -2.2426 9.1183 16 8 5.9429 -3.5360 8.9398 17 7 6.1252 -1.6692 6.8661 18 6 6.7527 -2.8466 6.5574 19 1 6.3904 -3.7762 6.9708 20 6 7.8546 -2.8451 5.7131 21 7 8.4574 -3.9769 5.4160 22 14 8.4809 -1.2374 4.9976 23 1 9.4926 -0.6494 5.9120 24 1 9.1006 -1.4933 3.6726 25 1 7.3474 -0.2911 4.8393 26 6 3.8517 -2.5324 7.1467 27 7 2.1330 -0.8544 3.5737 28 6 1.7012 -0.2430 2.4922 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 3.1010 -2.2223 0.1390 37 1 3.8926 -3.3425 2.2121 38 1 2.7722 -0.1400 4.9310 39 1 2.0633 -0.3987 6.5459 40 1 3.7408 1.3731 6.6932 41 1 4.9556 0.3280 5.9170 42 1 3.5717 -0.2440 8.5772 43 1 5.2315 0.3705 8.3909 44 1 6.0877 -1.5808 9.5913 45 1 4.4788 -2.3252 9.7516 46 1 6.2206 -3.9596 9.7635 47 1 6.4509 -0.8343 6.4951 48 1 9.2271 -3.9759 4.8258 49 1 3.0211 -2.6091 7.8485 50 1 4.2376 -3.5279 6.9272 51 1 1.0842 0.6381 2.5888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724908124.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:09 Heat of formation + Delta-G solvation = -41.911808 kcal Electronic energy + Delta-G solvation = -32638.111516 eV Core-core repulsion = 28537.447303 eV Total energy + Delta-G solvation = -4100.664212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.02458 -40.75008 -39.22922 -37.21838 -36.79514 -35.60303 -34.06848 -33.32566 -32.69521 -31.56543 -30.82989 -27.93408 -27.31468 -26.57645 -25.29318 -24.99166 -24.77053 -22.91224 -21.66522 -21.21377 -20.01238 -19.68075 -18.43671 -18.04781 -17.83651 -17.03521 -16.62530 -16.52364 -16.24244 -16.11160 -15.68741 -15.59549 -15.07942 -15.03220 -14.85231 -14.65779 -14.63711 -14.50545 -14.23013 -13.92342 -13.83596 -13.66704 -13.46424 -13.33352 -13.03419 -12.94438 -12.73774 -12.52623 -12.16154 -12.08168 -12.06639 -11.92849 -11.90062 -11.67874 -11.38982 -11.37641 -11.22925 -10.90025 -10.87619 -10.57536 -10.07304 -9.95787 -9.57805 -9.06761 -7.82390 -5.13095 -0.38149 0.16534 1.26248 1.32348 1.37738 1.73323 2.05926 2.54628 2.74271 3.06570 3.32858 3.53960 3.60484 3.64850 3.70328 3.85908 3.90109 4.01847 4.03890 4.08998 4.20329 4.30674 4.31466 4.33136 4.54219 4.56433 4.59122 4.72693 4.73510 4.79226 4.84703 4.87068 4.87984 4.91466 4.95611 4.99346 5.04845 5.14605 5.17176 5.18985 5.25505 5.38152 5.43043 5.44372 5.50432 5.58439 5.84130 6.12973 6.44937 6.46695 6.67846 7.12072 7.22925 7.32154 7.98360 8.14761 9.40884 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.003849 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.339377 B = 7273.048288 C = 8045.131526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.077 4.077 6 C -0.129 4.129 7 C 0.059 3.941 8 C 0.552 3.448 9 O -0.581 6.581 10 N -0.574 5.574 11 C 0.074 3.926 12 C -0.131 4.131 13 C -0.112 4.112 14 C 0.181 3.819 15 C 0.073 3.927 16 O -0.570 6.570 17 N -0.732 5.732 18 C -0.160 4.160 19 H 0.078 0.922 20 C -0.086 4.086 21 N -0.996 5.996 22 Si 0.937 3.063 23 H -0.281 1.281 24 H -0.308 1.308 25 H -0.262 1.262 26 C 0.112 3.888 27 N -0.448 5.448 28 C 0.096 3.904 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.165 0.835 37 H 0.121 0.879 38 H 0.140 0.860 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.032 0.968 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.046 0.954 45 H 0.067 0.933 46 H 0.372 0.628 47 H 0.358 0.642 48 H 0.245 0.755 49 H 0.081 0.919 50 H 0.048 0.952 51 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.844 17.442 -5.339 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.203 4.203 4 C -0.099 4.099 5 C -0.102 4.102 6 C -0.150 4.150 7 C -0.077 4.077 8 C 0.339 3.661 9 O -0.461 6.461 10 N -0.304 5.304 11 C -0.047 4.047 12 C -0.170 4.170 13 C -0.150 4.150 14 C 0.090 3.910 15 C -0.007 4.007 16 O -0.376 6.376 17 N -0.374 5.374 18 C -0.291 4.291 19 H 0.096 0.904 20 C -0.274 4.274 21 N -0.651 5.651 22 Si 0.767 3.233 23 H -0.208 1.208 24 H -0.236 1.236 25 H -0.188 1.188 26 C -0.012 4.012 27 N -0.160 5.160 28 C -0.064 4.064 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.183 0.817 37 H 0.139 0.861 38 H 0.156 0.844 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.051 0.949 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.219 0.781 47 H 0.192 0.808 48 H 0.054 0.946 49 H 0.099 0.901 50 H 0.067 0.933 51 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -20.973 17.080 -5.091 27.523 hybrid contribution 1.879 -0.664 -0.650 2.096 sum -19.094 16.417 -5.740 25.827 Atomic orbital electron populations 1.21873 0.92629 1.02158 1.03435 1.20198 0.97033 0.96359 0.93294 1.21890 1.00764 0.94158 1.03497 1.21450 0.95720 0.94960 0.97795 1.21816 0.95263 0.94527 0.98621 1.22126 0.99422 1.00563 0.92874 1.20896 0.99063 0.94693 0.93023 1.18450 0.77947 0.85684 0.84021 1.90781 1.50536 1.18915 1.85840 1.47803 1.61846 1.13491 1.07210 1.22943 0.96637 0.78146 1.06988 1.21875 0.98302 1.00709 0.96076 1.21719 1.02485 0.92524 0.98292 1.20413 0.86104 0.95360 0.89075 1.22713 0.96556 0.84816 0.96604 1.86977 1.82926 1.32393 1.35279 1.42819 1.33300 1.04886 1.56367 1.19243 1.04745 0.87704 1.17443 0.90403 1.25341 1.00493 0.98685 1.02888 1.69904 1.25199 1.26478 1.43539 0.85643 0.78463 0.81729 0.77444 1.20754 1.23553 1.18752 1.22013 0.96620 0.97580 0.85018 1.67500 1.09584 1.05991 1.32882 1.23380 0.96723 0.99536 0.86751 0.91491 0.90454 0.93182 0.89196 0.90390 0.91415 0.93579 0.81710 0.86095 0.84359 0.89410 0.87107 0.94893 0.87697 0.90510 0.93614 0.91478 0.78113 0.80840 0.94597 0.90126 0.93299 0.78554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.01 71.98 0.65 -0.55 16 2 C -0.05 -0.54 3.11 -11.54 -0.04 -0.57 16 3 C -0.15 -1.36 9.01 71.98 0.65 -0.71 16 4 C -0.10 -1.74 4.80 -19.69 -0.09 -1.83 16 5 C -0.08 -1.76 9.79 22.45 0.22 -1.54 16 6 C -0.13 -4.29 9.63 22.61 0.22 -4.07 16 7 C 0.06 2.10 6.46 41.91 0.27 2.37 16 8 C 0.55 24.70 7.62 86.88 0.66 25.36 16 9 O -0.58 -32.17 15.94 -3.75 -0.06 -32.23 16 10 N -0.57 -22.10 2.90 -822.75 -2.38 -24.49 16 11 C 0.07 2.06 5.96 86.22 0.51 2.58 16 12 C -0.13 -3.42 5.90 30.53 0.18 -3.24 16 13 C -0.11 -2.93 4.77 30.62 0.15 -2.78 16 14 C 0.18 6.73 0.68 3.69 0.00 6.74 16 15 C 0.07 2.46 6.09 71.98 0.44 2.90 16 16 O -0.57 -24.00 10.05 -148.98 -1.50 -25.50 16 17 N -0.73 -35.38 4.55 -302.95 -1.38 -36.76 16 18 C -0.16 -9.72 8.55 84.03 0.72 -9.00 16 19 H 0.08 5.36 5.50 -2.91 -0.02 5.34 16 20 C -0.09 -5.56 5.50 84.86 0.47 -5.10 16 21 N -1.00 -70.47 13.97 21.65 0.30 -70.16 16 22 Si 0.94 50.06 27.73 68.60 1.90 51.97 16 23 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.31 -16.93 7.11 99.48 0.71 -16.23 16 25 H -0.26 -12.80 6.52 99.48 0.65 -12.16 16 26 C 0.11 4.51 4.91 86.37 0.42 4.94 16 27 N -0.45 -12.19 6.35 -184.91 -1.17 -13.37 16 28 C 0.10 1.82 9.90 84.82 0.84 2.66 16 29 H 0.07 0.47 7.41 -2.39 -0.02 0.46 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 0.87 7.92 -2.39 -0.02 0.85 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.53 7.40 -2.39 -0.02 0.51 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.17 2.79 8.00 -2.91 -0.02 2.76 16 37 H 0.12 4.60 7.79 -2.91 -0.02 4.58 16 38 H 0.14 3.82 3.97 -57.35 -0.23 3.59 16 39 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.03 1.09 6.75 -2.38 -0.02 1.08 16 42 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.37 11.82 9.12 -74.06 -0.68 11.14 16 47 H 0.36 17.04 4.29 -92.71 -0.40 16.65 16 48 H 0.25 16.70 8.31 -92.71 -0.77 15.93 16 49 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 50 H 0.05 2.57 5.83 -2.39 -0.01 2.55 16 51 H 0.20 2.14 7.12 -2.91 -0.02 2.12 16 Total: -1.00 -93.07 392.89 1.59 -91.48 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: -0.39 Total: 40.92 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 6.27 Total: 18.15 kcal Atomic # 7 Polarization: -140.14 SS G_CDS: -4.63 Total: -144.78 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -1.56 Total: -57.73 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 1.90 Total: 51.97 kcal Total: -93.07 1.59 -91.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724908124.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.566 kcal (2) G-P(sol) polarization free energy of solvation -93.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds