Wall clock time and date at job start Wed Apr 1 2020 04:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 C 1.50701 * 109.46983 * 120.00279 * 2 1 3 5 5 C 1.38354 * 119.45815 * 274.97364 * 4 2 1 6 6 C 1.38357 * 119.29940 * 179.72487 * 5 4 2 7 7 C 1.40016 * 118.29140 * 0.55787 * 6 5 4 8 8 C 1.47846 * 120.56209 * 179.73330 * 7 6 5 9 9 O 1.21551 * 119.99488 * 359.73023 * 8 7 6 10 10 N 1.34769 * 120.00328 * 179.72106 * 8 7 6 11 11 C 1.46504 * 120.00380 * 184.91991 * 10 8 7 12 12 C 1.53003 * 109.44360 * 57.45448 * 11 10 8 13 13 O 1.42900 * 109.47583 * 56.11452 * 12 11 10 14 14 C 1.53043 * 109.46074 * 177.41853 * 11 10 8 15 15 C 1.53186 * 109.31249 * 58.65479 * 14 11 10 16 16 N 1.46927 * 108.77418 * 54.63543 * 15 14 11 17 17 C 1.36937 * 120.63315 * 126.41247 * 16 15 14 18 18 H 1.08006 * 119.99935 * 332.36031 * 17 16 15 19 19 C 1.38811 * 120.00520 * 152.35805 * 17 16 15 20 20 N 1.31619 * 120.00389 * 160.14155 * 19 17 16 21 21 Si 1.86809 * 119.99734 * 340.14348 * 19 17 16 22 22 H 1.48501 * 109.47071 * 93.28710 * 21 19 17 23 23 H 1.48497 * 109.46848 * 213.28477 * 21 19 17 24 24 H 1.48494 * 109.46911 * 333.28754 * 21 19 17 25 25 C 1.46933 * 118.74030 * 306.38833 * 16 15 14 26 26 C 1.53039 * 109.45671 * 297.48785 * 11 10 8 27 27 C 1.39518 * 118.88101 * 359.46542 * 7 6 5 28 28 N 1.31697 * 120.56610 * 0.25127 * 27 7 6 29 29 H 1.09006 * 109.46589 * 300.00334 * 1 2 3 30 30 H 1.08998 * 109.47312 * 59.99762 * 1 2 3 31 31 H 1.08991 * 109.47652 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46589 * 239.99666 * 2 1 3 33 33 H 1.09005 * 109.47073 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46980 * 299.99575 * 3 2 1 35 35 H 1.08998 * 109.46970 * 60.00414 * 3 2 1 36 36 H 1.07994 * 120.35056 * 0.02562 * 5 4 2 37 37 H 1.08008 * 120.85258 * 180.29326 * 6 5 4 38 38 H 0.97003 * 119.99920 * 4.92370 * 10 8 7 39 39 H 1.09004 * 109.46682 * 176.11302 * 12 11 10 40 40 H 1.09002 * 109.47059 * 296.10592 * 12 11 10 41 41 H 0.96690 * 113.99963 * 179.97438 * 13 12 11 42 42 H 1.08997 * 109.49142 * 178.60991 * 14 11 10 43 43 H 1.09001 * 109.49759 * 298.70702 * 14 11 10 44 44 H 1.08999 * 109.58935 * 294.85061 * 15 14 11 45 45 H 1.08999 * 109.59016 * 174.41928 * 15 14 11 46 46 H 0.97004 * 119.99844 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.58501 * 293.82264 * 25 16 15 48 48 H 1.08998 * 109.70478 * 173.47119 * 25 16 15 49 49 H 1.08992 * 109.49704 * 61.29735 * 26 11 10 50 50 H 1.09003 * 109.49055 * 181.38891 * 26 11 10 51 51 H 1.08004 * 119.71950 * 180.27359 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1606 -0.0093 2.4162 6 6 2.6167 -0.6663 3.5453 7 6 2.9436 -2.0234 3.4368 8 6 3.4412 -2.7729 4.6101 9 8 3.5742 -2.2098 5.6791 10 7 3.7472 -4.0802 4.4944 11 6 4.1369 -4.8491 5.6790 12 6 3.0232 -4.7720 6.7253 13 8 1.7976 -5.2305 6.1511 14 6 4.3668 -6.3101 5.2857 15 6 5.4581 -6.3803 4.2130 16 7 6.6573 -5.6940 4.7128 17 6 7.8710 -6.3281 4.7227 18 1 7.9174 -7.4043 4.8019 19 6 9.0417 -5.5879 4.6308 20 7 10.1838 -6.1114 5.0231 21 14 8.9961 -3.8487 3.9505 22 1 8.8493 -2.8833 5.0693 23 1 10.2579 -3.5703 3.2188 24 1 7.8449 -3.7102 3.0228 25 6 6.5297 -4.3142 5.2013 26 6 5.4263 -4.2672 6.2629 27 6 2.7865 -2.6580 2.2043 28 7 2.3429 -1.9906 1.1592 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.9029 1.0384 2.4613 37 1 2.7219 -0.1445 4.4851 38 1 3.7095 -4.5122 3.6267 39 1 3.2820 -5.3995 7.5782 40 1 2.9060 -3.7400 7.0558 41 1 1.0463 -5.2096 6.7594 42 1 4.6807 -6.8775 6.1618 43 1 3.4417 -6.7307 4.8915 44 1 5.1091 -5.8905 3.3040 45 1 5.6955 -7.4228 4.0008 46 1 11.0018 -5.5939 4.9592 47 1 6.2680 -3.6560 4.3729 48 1 7.4735 -3.9911 5.6405 49 1 5.2552 -3.2338 6.5643 50 1 5.7302 -4.8539 7.1298 51 1 3.0304 -3.7056 2.1065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733913270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:06 Heat of formation + Delta-G solvation = -26.563202 kcal Electronic energy + Delta-G solvation = -32075.460750 eV Core-core repulsion = 27975.462103 eV Total energy + Delta-G solvation = -4099.998647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.99982 -39.98624 -37.73906 -36.32583 -35.81875 -34.27477 -32.70492 -32.28190 -31.18561 -30.46691 -29.82642 -27.56524 -26.95629 -25.08514 -23.82821 -23.60035 -22.81458 -21.93081 -21.04862 -20.33634 -19.00954 -18.17921 -17.34352 -16.85190 -16.54898 -16.26013 -15.52001 -15.28538 -15.20734 -14.95617 -14.67547 -14.35042 -14.20075 -14.02570 -13.76729 -13.66575 -13.51835 -13.22390 -13.10403 -13.00384 -12.71275 -12.50343 -12.39947 -12.01712 -11.82771 -11.79767 -11.58682 -11.53030 -11.30570 -11.29335 -10.87468 -10.57602 -10.32914 -10.19155 -10.08884 -10.02195 -9.75142 -9.73571 -9.49907 -9.24121 -9.21516 -8.85728 -8.58176 -6.98481 -5.95660 -3.32253 0.49794 1.03612 2.86723 3.20493 3.33473 3.48571 3.50875 3.71409 3.82604 4.28718 4.33445 4.52532 4.59884 4.64119 4.74784 4.75321 4.84685 4.90160 4.95822 5.10605 5.17332 5.21251 5.28319 5.35594 5.38733 5.44830 5.45630 5.53269 5.58450 5.60735 5.74340 5.78939 5.86326 5.87435 5.89919 5.97833 5.98270 6.05734 6.18980 6.33086 6.35968 6.45859 6.54382 6.61105 6.64652 6.74603 6.90734 7.63627 7.66750 7.69491 7.95210 8.30630 8.31894 8.92681 9.71204 10.08625 11.20261 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.003496 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.559884 B = 8007.857894 C = 9438.907961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C -0.149 4.149 4 C 0.153 3.847 5 C -0.179 4.179 6 C -0.016 4.016 7 C -0.186 4.186 8 C 0.568 3.432 9 O -0.539 6.539 10 N -0.696 5.696 11 C 0.194 3.806 12 C 0.063 3.937 13 O -0.568 6.568 14 C -0.136 4.136 15 C 0.148 3.852 16 N -0.605 5.605 17 C -0.260 4.260 18 H 0.086 0.914 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.882 3.118 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.272 1.272 25 C 0.134 3.866 26 C -0.145 4.145 27 C 0.141 3.859 28 N -0.485 5.485 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.399 0.601 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.372 0.628 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.018 0.982 45 H 0.068 0.932 46 H 0.262 0.738 47 H 0.023 0.977 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.691 11.197 -4.933 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.206 4.206 4 C 0.015 3.985 5 C -0.199 4.199 6 C -0.043 4.043 7 C -0.191 4.191 8 C 0.354 3.646 9 O -0.418 6.418 10 N -0.347 5.347 11 C 0.108 3.892 12 C -0.015 4.015 13 O -0.372 6.372 14 C -0.175 4.175 15 C 0.022 3.978 16 N -0.329 5.329 17 C -0.388 4.388 18 H 0.104 0.896 19 C -0.174 4.174 20 N -0.551 5.551 21 Si 0.713 3.287 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.197 1.197 25 C 0.009 3.991 26 C -0.185 4.185 27 C -0.018 4.018 28 N -0.193 5.193 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.235 0.765 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.218 0.782 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.036 0.964 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.041 0.959 48 H 0.090 0.910 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.099 11.033 -5.472 24.430 hybrid contribution -0.032 1.243 0.630 1.394 sum -21.131 12.276 -4.841 24.913 Atomic orbital electron populations 1.21799 0.93376 1.02478 1.02191 1.20110 0.96329 0.95498 0.94957 1.21941 1.01596 0.94693 1.02410 1.21451 0.92430 0.89819 0.94761 1.21968 1.03057 1.01828 0.93058 1.21717 0.90781 0.92594 0.99161 1.21087 1.06019 0.96100 0.95863 1.17904 0.77293 0.81853 0.87550 1.90684 1.53943 1.68737 1.28465 1.45862 1.67917 1.09254 1.11682 1.20339 0.92502 0.92082 0.84259 1.22707 0.84308 0.99318 0.95195 1.86455 1.19032 1.88889 1.42834 1.22273 0.99897 0.93334 1.01997 1.20919 0.86688 0.97448 0.92780 1.44375 1.05264 1.11506 1.71736 1.18918 0.81265 0.93139 1.45472 0.89601 1.25266 0.95107 0.97669 0.99375 1.69824 0.98867 1.37992 1.48457 0.86968 0.76290 0.85888 0.79538 1.21694 1.23182 1.19700 1.21220 0.96978 0.86902 0.94042 1.22415 0.94112 1.01854 1.00142 1.22974 0.91884 0.99770 0.87123 1.67507 1.11889 1.08561 1.31381 0.92457 0.91724 0.92174 0.88952 0.92176 0.91666 0.92049 0.84069 0.83552 0.76490 0.93094 0.91686 0.78214 0.90287 0.91132 0.96432 0.91354 0.92766 0.95878 0.90978 0.90345 0.90786 0.82416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.18 37.16 0.34 -0.62 16 2 C -0.05 -0.41 3.23 -91.77 -0.30 -0.70 16 3 C -0.15 -0.95 8.61 37.16 0.32 -0.63 16 4 C 0.15 1.66 5.79 -82.51 -0.48 1.19 16 5 C -0.18 -1.81 9.16 -39.49 -0.36 -2.17 16 6 C -0.02 -0.19 9.72 -38.87 -0.38 -0.57 16 7 C -0.19 -2.54 5.89 -104.82 -0.62 -3.15 16 8 C 0.57 8.91 7.19 -12.33 -0.09 8.82 16 9 O -0.54 -9.56 12.70 5.32 0.07 -9.49 16 10 N -0.70 -10.55 3.86 -48.50 -0.19 -10.74 16 11 C 0.19 3.08 0.44 -131.77 -0.06 3.02 16 12 C 0.06 0.88 5.62 37.16 0.21 1.09 16 13 O -0.57 -7.13 12.91 -35.23 -0.45 -7.58 16 14 C -0.14 -2.14 4.87 -26.61 -0.13 -2.27 16 15 C 0.15 2.76 6.24 -3.71 -0.02 2.74 16 16 N -0.60 -14.07 2.77 -172.32 -0.48 -14.55 16 17 C -0.26 -7.18 10.04 -15.06 -0.15 -7.33 16 18 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 19 C 0.02 0.72 5.25 -17.43 -0.09 0.63 16 20 N -0.91 -27.94 13.97 55.49 0.78 -27.17 16 21 Si 0.88 22.93 24.33 -169.99 -4.14 18.80 16 22 H -0.29 -7.39 6.64 56.52 0.38 -7.01 16 23 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 24 H -0.27 -6.96 6.55 56.52 0.37 -6.59 16 25 C 0.13 2.99 3.93 -3.71 -0.01 2.98 16 26 C -0.15 -2.71 4.70 -26.61 -0.13 -2.84 16 27 C 0.14 1.82 10.71 -17.13 -0.18 1.63 16 28 N -0.49 -6.22 10.25 -9.14 -0.09 -6.31 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.34 6.48 -51.93 -0.34 0.00 16 36 H 0.14 1.03 6.29 -52.49 -0.33 0.70 16 37 H 0.15 1.65 7.74 -52.48 -0.41 1.25 16 38 H 0.40 5.50 5.27 -40.82 -0.22 5.29 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.98 6.27 -51.93 -0.33 0.66 16 41 H 0.37 3.07 9.12 45.56 0.42 3.49 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.07 1.00 7.75 -51.93 -0.40 0.60 16 44 H 0.02 0.31 6.89 -51.93 -0.36 -0.05 16 45 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.02 0.53 6.61 -51.93 -0.34 0.19 16 48 H 0.07 1.79 4.48 -51.93 -0.23 1.56 16 49 H 0.08 1.49 6.22 -51.93 -0.32 1.17 16 50 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 51 H 0.16 1.78 6.44 -52.48 -0.34 1.44 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -33.96 388.80 -7.80 -41.76 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.03 Total: 7.63 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.13 Total: 1.80 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.02 Total: -58.77 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.39 Total: -17.07 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.14 Total: 18.80 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.96 -7.80 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733913270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.201 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds