Wall clock time and date at job start Wed Apr 1 2020 04:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47285 * 2 1 4 4 C 1.50701 * 109.46983 * 120.00279 * 2 1 3 5 5 C 1.38354 * 119.45815 * 274.97364 * 4 2 1 6 6 C 1.38357 * 119.29940 * 179.72487 * 5 4 2 7 7 C 1.40016 * 118.29140 * 0.55787 * 6 5 4 8 8 C 1.47846 * 120.56209 * 179.73330 * 7 6 5 9 9 O 1.21551 * 119.99488 * 359.73023 * 8 7 6 10 10 N 1.34769 * 120.00328 * 179.72106 * 8 7 6 11 11 C 1.46504 * 120.00380 * 184.91991 * 10 8 7 12 12 C 1.53003 * 109.44360 * 57.45448 * 11 10 8 13 13 O 1.42900 * 109.47583 * 56.11452 * 12 11 10 14 14 C 1.53043 * 109.46074 * 177.41853 * 11 10 8 15 15 C 1.53186 * 109.31249 * 58.65479 * 14 11 10 16 16 N 1.46927 * 108.77418 * 54.63543 * 15 14 11 17 17 C 1.36937 * 120.63315 * 126.41247 * 16 15 14 18 18 H 1.08006 * 119.99935 * 332.36031 * 17 16 15 19 19 C 1.38811 * 120.00520 * 152.35805 * 17 16 15 20 20 N 1.31619 * 120.00389 * 160.14155 * 19 17 16 21 21 Si 1.86809 * 119.99734 * 340.14348 * 19 17 16 22 22 H 1.48501 * 109.47071 * 93.28710 * 21 19 17 23 23 H 1.48497 * 109.46848 * 213.28477 * 21 19 17 24 24 H 1.48494 * 109.46911 * 333.28754 * 21 19 17 25 25 C 1.46933 * 118.74030 * 306.38833 * 16 15 14 26 26 C 1.53039 * 109.45671 * 297.48785 * 11 10 8 27 27 C 1.39518 * 118.88101 * 359.46542 * 7 6 5 28 28 N 1.31697 * 120.56610 * 0.25127 * 27 7 6 29 29 H 1.09006 * 109.46589 * 300.00334 * 1 2 3 30 30 H 1.08998 * 109.47312 * 59.99762 * 1 2 3 31 31 H 1.08991 * 109.47652 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46589 * 239.99666 * 2 1 3 33 33 H 1.09005 * 109.47073 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46980 * 299.99575 * 3 2 1 35 35 H 1.08998 * 109.46970 * 60.00414 * 3 2 1 36 36 H 1.07994 * 120.35056 * 0.02562 * 5 4 2 37 37 H 1.08008 * 120.85258 * 180.29326 * 6 5 4 38 38 H 0.97003 * 119.99920 * 4.92370 * 10 8 7 39 39 H 1.09004 * 109.46682 * 176.11302 * 12 11 10 40 40 H 1.09002 * 109.47059 * 296.10592 * 12 11 10 41 41 H 0.96690 * 113.99963 * 179.97438 * 13 12 11 42 42 H 1.08997 * 109.49142 * 178.60991 * 14 11 10 43 43 H 1.09001 * 109.49759 * 298.70702 * 14 11 10 44 44 H 1.08999 * 109.58935 * 294.85061 * 15 14 11 45 45 H 1.08999 * 109.59016 * 174.41928 * 15 14 11 46 46 H 0.97004 * 119.99844 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.58501 * 293.82264 * 25 16 15 48 48 H 1.08998 * 109.70478 * 173.47119 * 25 16 15 49 49 H 1.08992 * 109.49704 * 61.29735 * 26 11 10 50 50 H 1.09003 * 109.49055 * 181.38891 * 26 11 10 51 51 H 1.08004 * 119.71950 * 180.27359 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1606 -0.0093 2.4162 6 6 2.6167 -0.6663 3.5453 7 6 2.9436 -2.0234 3.4368 8 6 3.4412 -2.7729 4.6101 9 8 3.5742 -2.2098 5.6791 10 7 3.7472 -4.0802 4.4944 11 6 4.1369 -4.8491 5.6790 12 6 3.0232 -4.7720 6.7253 13 8 1.7976 -5.2305 6.1511 14 6 4.3668 -6.3101 5.2857 15 6 5.4581 -6.3803 4.2130 16 7 6.6573 -5.6940 4.7128 17 6 7.8710 -6.3281 4.7227 18 1 7.9174 -7.4043 4.8019 19 6 9.0417 -5.5879 4.6308 20 7 10.1838 -6.1114 5.0231 21 14 8.9961 -3.8487 3.9505 22 1 8.8493 -2.8833 5.0693 23 1 10.2579 -3.5703 3.2188 24 1 7.8449 -3.7102 3.0228 25 6 6.5297 -4.3142 5.2013 26 6 5.4263 -4.2672 6.2629 27 6 2.7865 -2.6580 2.2043 28 7 2.3429 -1.9906 1.1592 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.9029 1.0384 2.4613 37 1 2.7219 -0.1445 4.4851 38 1 3.7095 -4.5122 3.6267 39 1 3.2820 -5.3995 7.5782 40 1 2.9060 -3.7400 7.0558 41 1 1.0463 -5.2096 6.7594 42 1 4.6807 -6.8775 6.1618 43 1 3.4417 -6.7307 4.8915 44 1 5.1091 -5.8905 3.3040 45 1 5.6955 -7.4228 4.0008 46 1 11.0018 -5.5939 4.9592 47 1 6.2680 -3.6560 4.3729 48 1 7.4735 -3.9911 5.6405 49 1 5.2552 -3.2338 6.5643 50 1 5.7302 -4.8539 7.1298 51 1 3.0304 -3.7056 2.1065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733913270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:05 Heat of formation + Delta-G solvation = -51.506903 kcal Electronic energy + Delta-G solvation = -32076.542390 eV Core-core repulsion = 27975.462103 eV Total energy + Delta-G solvation = -4101.080287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.06380 -41.08466 -39.08282 -37.55124 -36.53496 -35.75442 -33.97914 -33.62062 -32.69679 -32.04821 -30.87984 -28.51549 -28.06391 -25.98975 -25.51410 -24.53346 -24.41463 -23.11297 -22.36815 -21.28102 -20.38089 -19.32007 -18.89598 -18.07042 -17.63396 -17.35179 -17.07288 -16.48918 -16.36690 -16.13822 -15.88071 -15.55268 -15.40680 -15.31268 -15.04052 -14.85757 -14.71414 -14.39448 -14.15353 -14.10885 -13.84755 -13.73416 -13.60657 -13.51852 -13.40083 -12.89089 -12.66731 -12.63732 -12.25449 -12.23477 -12.10431 -12.09055 -11.90255 -11.74081 -11.56805 -11.44331 -11.16946 -10.98217 -10.79346 -10.72309 -10.38184 -10.18665 -9.95835 -8.95514 -8.19797 -5.50818 -0.43922 0.15009 1.24355 1.34074 1.41775 1.78748 2.05419 2.36406 2.75435 3.00944 3.03655 3.19056 3.34502 3.57913 3.58709 3.76113 3.82921 3.86606 3.95110 4.10794 4.14982 4.15921 4.25958 4.26785 4.45318 4.49258 4.50678 4.57100 4.58429 4.64713 4.69594 4.81119 4.85865 4.89258 4.91168 4.94988 4.98505 5.01578 5.06354 5.09622 5.13413 5.20473 5.30738 5.35505 5.39641 5.51738 5.55891 5.84929 6.11133 6.49003 6.80082 6.87442 6.88393 7.13563 7.59193 8.00550 9.00080 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.003496 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.559884 B = 8007.857894 C = 9438.907961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C -0.146 4.146 4 C 0.149 3.851 5 C -0.171 4.171 6 C -0.023 4.023 7 C -0.205 4.205 8 C 0.566 3.434 9 O -0.565 6.565 10 N -0.695 5.695 11 C 0.193 3.807 12 C 0.075 3.925 13 O -0.573 6.573 14 C -0.121 4.121 15 C 0.142 3.858 16 N -0.616 5.616 17 C -0.241 4.241 18 H 0.062 0.938 19 C -0.030 4.030 20 N -0.954 5.954 21 Si 0.939 3.061 22 H -0.287 1.287 23 H -0.310 1.310 24 H -0.265 1.265 25 C 0.136 3.864 26 C -0.136 4.136 27 C 0.136 3.864 28 N -0.505 5.505 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.173 0.827 37 H 0.151 0.849 38 H 0.405 0.595 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.393 0.607 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.037 0.963 45 H 0.066 0.934 46 H 0.261 0.739 47 H 0.021 0.979 48 H 0.043 0.957 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.704 12.768 -5.822 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C -0.204 4.204 4 C 0.011 3.989 5 C -0.190 4.190 6 C -0.049 4.049 7 C -0.210 4.210 8 C 0.354 3.646 9 O -0.445 6.445 10 N -0.346 5.346 11 C 0.108 3.892 12 C -0.003 4.003 13 O -0.381 6.381 14 C -0.160 4.160 15 C 0.017 3.983 16 N -0.340 5.340 17 C -0.371 4.371 18 H 0.079 0.921 19 C -0.225 4.225 20 N -0.601 5.601 21 Si 0.769 3.231 22 H -0.214 1.214 23 H -0.239 1.239 24 H -0.190 1.190 25 C 0.011 3.989 26 C -0.176 4.176 27 C -0.023 4.023 28 N -0.214 5.214 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.190 0.810 37 H 0.168 0.832 38 H 0.243 0.757 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.242 0.758 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.039 0.961 48 H 0.061 0.939 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -24.185 12.603 -6.373 28.007 hybrid contribution 0.788 0.730 0.872 1.383 sum -23.398 13.333 -5.501 27.486 Atomic orbital electron populations 1.21782 0.92193 1.02005 1.03472 1.20214 0.97189 0.96196 0.93291 1.21943 1.00994 0.93552 1.03885 1.22022 0.91313 0.89413 0.96117 1.22263 1.01696 1.03112 0.91938 1.21901 0.90755 0.92184 1.00065 1.21012 1.07743 0.96834 0.95413 1.18201 0.76726 0.81860 0.87810 1.90666 1.55131 1.69216 1.29536 1.45826 1.67708 1.09293 1.11744 1.20257 0.92048 0.91821 0.85117 1.22419 0.84351 0.99054 0.94515 1.86391 1.19272 1.88623 1.43792 1.22123 0.99665 0.93373 1.00838 1.21148 0.85692 0.97043 0.94423 1.44480 1.05214 1.11894 1.72452 1.18915 0.83002 0.92299 1.42842 0.92077 1.25794 0.95018 1.01000 1.00688 1.69933 0.99531 1.39625 1.51002 0.86044 0.75886 0.82321 0.78837 1.21409 1.23884 1.18983 1.21114 0.96912 0.86136 0.94751 1.22251 0.94467 1.01996 0.98897 1.23118 0.91870 1.00332 0.86934 1.67563 1.12664 1.09700 1.31443 0.91739 0.89905 0.93521 0.89732 0.93117 0.90052 0.90786 0.80988 0.83180 0.75738 0.91761 0.92861 0.75776 0.90611 0.88542 0.94545 0.91510 0.93008 0.96096 0.93895 0.90650 0.91003 0.81525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.18 71.98 0.66 -0.85 16 2 C -0.05 -0.69 3.23 -11.54 -0.04 -0.73 16 3 C -0.15 -1.43 8.61 71.98 0.62 -0.81 16 4 C 0.15 2.94 5.79 42.57 0.25 3.19 16 5 C -0.17 -3.04 9.16 22.33 0.20 -2.83 16 6 C -0.02 -0.51 9.72 22.73 0.22 -0.29 16 7 C -0.20 -5.35 5.89 -19.99 -0.12 -5.47 16 8 C 0.57 17.11 7.19 86.79 0.62 17.73 16 9 O -0.56 -19.54 12.70 -3.88 -0.05 -19.59 16 10 N -0.69 -19.85 3.86 -425.63 -1.64 -21.50 16 11 C 0.19 5.79 0.44 3.63 0.00 5.79 16 12 C 0.08 1.92 5.62 71.98 0.40 2.33 16 13 O -0.57 -12.63 12.91 -148.98 -1.92 -14.55 16 14 C -0.12 -3.53 4.87 30.67 0.15 -3.38 16 15 C 0.14 5.06 6.24 86.36 0.54 5.60 16 16 N -0.62 -28.40 2.77 -699.10 -1.94 -30.34 16 17 C -0.24 -13.52 10.04 84.03 0.84 -12.67 16 18 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 19 C -0.03 -1.78 5.25 84.86 0.45 -1.33 16 20 N -0.95 -60.44 13.97 21.65 0.30 -60.14 16 21 Si 0.94 48.43 24.33 68.60 1.67 50.10 16 22 H -0.29 -14.49 6.64 99.48 0.66 -13.83 16 23 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 24 H -0.27 -13.18 6.55 99.48 0.65 -12.53 16 25 C 0.14 6.01 3.93 86.36 0.34 6.35 16 26 C -0.14 -4.98 4.70 30.67 0.14 -4.83 16 27 C 0.14 3.33 10.71 85.02 0.91 4.24 16 28 N -0.50 -12.28 10.25 -182.82 -1.87 -14.15 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.54 6.48 -2.39 -0.02 0.52 16 36 H 0.17 1.89 6.29 -2.91 -0.02 1.87 16 37 H 0.15 3.19 7.74 -2.91 -0.02 3.16 16 38 H 0.41 10.37 5.27 -92.71 -0.49 9.88 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.52 6.27 -2.39 -0.01 1.50 16 41 H 0.39 5.21 9.12 -74.06 -0.68 4.53 16 42 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.10 2.39 7.75 -2.39 -0.02 2.37 16 44 H 0.04 1.19 6.89 -2.39 -0.02 1.18 16 45 H 0.07 2.40 7.93 -2.39 -0.02 2.38 16 46 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 47 H 0.02 0.94 6.61 -2.39 -0.02 0.93 16 48 H 0.04 2.15 4.48 -2.39 -0.01 2.14 16 49 H 0.08 2.82 6.22 -2.39 -0.01 2.81 16 50 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 51 H 0.17 3.54 6.44 -2.91 -0.02 3.52 16 Total: -1.00 -74.32 388.80 0.44 -73.87 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -0.30 Total: 24.27 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.20 Total: 12.02 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -5.15 Total: -126.12 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.97 Total: -34.14 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 1.67 Total: 50.10 kcal Total: -74.32 0.44 -73.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733913270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.365 kcal (2) G-P(sol) polarization free energy of solvation -74.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds