Wall clock time and date at job start Wed Apr 1 2020 04:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47340 * 2 1 4 4 C 1.50706 * 109.46925 * 180.02562 * 3 2 1 5 5 C 1.38029 * 119.50879 * 125.00367 * 4 3 2 6 6 C 1.39919 * 119.12606 * 179.97438 * 5 4 3 7 7 C 1.48162 * 120.88839 * 179.97438 * 6 5 4 8 8 O 1.21515 * 120.00464 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00276 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00314 * 180.02562 * 9 7 6 11 11 H 1.09006 * 110.01574 * 33.61278 * 10 9 7 12 12 C 1.54265 * 110.03517 * 272.16815 * 10 9 7 13 13 C 1.54878 * 104.19688 * 217.10699 * 12 10 9 14 14 C 1.54888 * 102.75271 * 37.93852 * 13 12 10 15 15 H 1.09003 * 110.48756 * 80.73593 * 14 13 12 16 16 C 1.53002 * 110.60115 * 203.32671 * 14 13 12 17 17 N 1.46502 * 109.47076 * 289.83800 * 16 14 13 18 18 C 1.36938 * 119.99849 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99781 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99761 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00037 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99954 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47192 * 60.00143 * 22 20 18 24 24 H 1.48497 * 109.47213 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47140 * 299.99892 * 22 20 18 26 26 C 1.53871 * 110.03384 * 154.99690 * 10 9 7 27 27 C 1.39612 * 118.22175 * 359.97438 * 6 5 4 28 28 C 1.38852 * 118.94807 * 0.02562 * 27 6 5 29 29 O 1.35684 * 119.61901 * 179.97438 * 28 27 6 30 30 N 1.31874 * 119.51456 * 304.72903 * 4 3 2 31 31 H 1.09000 * 109.47196 * 59.99588 * 1 2 3 32 32 H 1.09001 * 109.47364 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46785 * 299.99692 * 1 2 3 34 34 H 1.09004 * 109.46785 * 240.00308 * 2 1 3 35 35 H 1.09004 * 109.47694 * 120.00406 * 2 1 3 36 36 H 1.09000 * 109.46497 * 60.00561 * 3 2 1 37 37 H 1.09000 * 109.47312 * 300.00340 * 3 2 1 38 38 H 1.07993 * 120.43457 * 359.95296 * 5 4 3 39 39 H 0.96998 * 119.99835 * 359.97438 * 9 7 6 40 40 H 1.09010 * 110.47995 * 335.78099 * 12 10 9 41 41 H 1.08994 * 110.48744 * 98.42109 * 12 10 9 42 42 H 1.09007 * 110.75625 * 279.62227 * 13 12 10 43 43 H 1.09001 * 110.76060 * 156.25347 * 13 12 10 44 44 H 1.08998 * 109.46782 * 49.83873 * 16 14 13 45 45 H 1.09001 * 109.46696 * 169.83977 * 16 14 13 46 46 H 0.96997 * 119.99712 * 0.02562 * 17 16 14 47 47 H 0.96999 * 120.00269 * 179.97438 * 21 20 18 48 48 H 1.08998 * 110.03875 * 238.57261 * 26 10 9 49 49 H 1.08999 * 110.03133 * 0.02562 * 26 10 9 50 50 H 1.08002 * 120.52553 * 180.02562 * 27 6 5 51 51 H 0.96703 * 114.00059 * 89.99915 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2266 2.1316 -0.9848 6 6 5.6258 2.1265 -0.9774 7 6 6.3945 2.8526 -2.0152 8 8 5.8101 3.4637 -2.8880 9 7 7.7420 2.8354 -1.9913 10 6 8.5021 3.5538 -3.0172 11 1 7.9666 4.4552 -3.3155 12 6 8.7290 2.6431 -4.2415 13 6 10.1557 3.0040 -4.7241 14 6 10.9210 3.2228 -3.3953 15 1 11.2246 2.2671 -2.9681 16 6 12.1402 4.1200 -3.6177 17 7 13.1491 3.3903 -4.3897 18 6 14.3340 3.9959 -4.7128 19 1 14.5249 5.0113 -4.3982 20 6 15.2898 3.3047 -5.4448 21 7 15.0568 2.0675 -5.8287 22 14 16.9064 4.1305 -5.8849 23 1 17.6187 4.5187 -4.6411 24 1 17.7480 3.1873 -6.6641 25 1 16.6374 5.3423 -6.7001 26 6 9.8957 3.9224 -2.4792 27 6 6.2781 1.4191 0.0341 28 6 5.5179 0.7525 0.9858 29 8 6.1378 0.0603 1.9745 30 7 4.1971 0.7884 0.9422 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6767 1.9562 0.8901 37 1 1.6767 1.9564 -0.8899 38 1 3.6854 2.6673 -1.7505 39 1 8.2085 2.3480 -1.2945 40 1 8.6786 1.5937 -3.9509 41 1 7.9969 2.8601 -5.0193 42 1 10.1431 3.9182 -5.3177 43 1 10.5920 2.1808 -5.2899 44 1 11.8391 5.0129 -4.1655 45 1 12.5592 4.4090 -2.6538 46 1 12.9774 2.4786 -4.6726 47 1 15.7245 1.5846 -6.3405 48 1 10.0370 5.0026 -2.5172 49 1 10.0067 3.5664 -1.4550 50 1 7.3570 1.3906 0.0756 51 1 6.3174 0.5833 2.7679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755740928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:54 Heat of formation + Delta-G solvation = -52.929321 kcal Electronic energy + Delta-G solvation = -29339.493394 eV Core-core repulsion = 25238.351426 eV Total energy + Delta-G solvation = -4101.141968 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31408 -39.94383 -38.17224 -37.71275 -35.35546 -34.94122 -33.69162 -32.78414 -31.18383 -30.96662 -28.83921 -27.92629 -27.40836 -25.08103 -24.14539 -23.36416 -22.19674 -22.06736 -20.74412 -20.46385 -19.72929 -19.16871 -17.63263 -17.38847 -17.03891 -16.34086 -16.14309 -15.93241 -15.30129 -15.23507 -14.92851 -14.88346 -14.46841 -14.26328 -14.10528 -13.85586 -13.45771 -13.19281 -13.04917 -12.83036 -12.78395 -12.51568 -12.27644 -12.18723 -11.92634 -11.88529 -11.59626 -11.36363 -11.12900 -11.11118 -10.85999 -10.77810 -10.61018 -10.51185 -10.34281 -10.32414 -10.26217 -9.98718 -9.85628 -9.67137 -9.32075 -9.25748 -8.85760 -6.90756 -5.75881 -3.04196 0.21240 0.45804 2.44249 2.73663 3.01382 3.29652 3.44253 3.48602 3.49662 3.91329 4.11042 4.41965 4.45169 4.56304 4.58353 4.62692 4.66349 4.72996 4.73725 4.90175 4.98292 5.08675 5.15087 5.29809 5.33016 5.40813 5.46571 5.48660 5.54816 5.56085 5.59287 5.62797 5.64733 5.79626 5.82934 5.83576 5.90295 5.95681 6.03635 6.08468 6.23282 6.27410 6.41999 6.53054 6.56933 6.78601 6.91799 6.96957 7.16340 7.39152 7.69862 7.83293 8.43312 9.54361 10.13102 10.47702 11.46982 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024533 B = 0.001611 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.057389 B =17377.273835 C =17875.226380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.070 4.070 4 C 0.153 3.847 5 C -0.125 4.125 6 C -0.066 4.066 7 C 0.557 3.443 8 O -0.526 6.526 9 N -0.712 5.712 10 C 0.140 3.860 11 H 0.093 0.907 12 C -0.134 4.134 13 C -0.111 4.111 14 C -0.097 4.097 15 H 0.075 0.925 16 C 0.160 3.840 17 N -0.732 5.732 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.123 4.123 27 C -0.162 4.162 28 C 0.315 3.685 29 O -0.478 6.478 30 N -0.486 5.486 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.152 0.848 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.020 0.980 45 H 0.017 0.983 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.146 0.854 51 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.734 -1.773 15.775 31.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.108 4.108 4 C 0.016 3.984 5 C -0.145 4.145 6 C -0.077 4.077 7 C 0.342 3.658 8 O -0.402 6.402 9 N -0.363 5.363 10 C 0.036 3.964 11 H 0.111 0.889 12 C -0.173 4.173 13 C -0.149 4.149 14 C -0.116 4.116 15 H 0.094 0.906 16 C 0.032 3.968 17 N -0.376 5.376 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.161 4.161 27 C -0.184 4.184 28 C 0.136 3.864 29 O -0.285 6.285 30 N -0.206 5.206 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.170 0.830 39 H 0.236 0.764 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.038 0.962 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.164 0.836 51 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -28.418 -2.111 15.387 32.385 hybrid contribution 1.830 0.541 -0.191 1.918 sum -26.588 -1.569 15.196 30.664 Atomic orbital electron populations 1.21781 0.95403 1.01919 1.01876 1.21455 0.95769 0.95305 1.03038 1.20668 0.87442 0.98920 1.03786 1.21017 0.96804 0.91483 0.89133 1.22154 0.93199 0.99589 0.99583 1.20331 0.94438 0.97639 0.95257 1.18104 0.82518 0.80673 0.84472 1.90795 1.69608 1.42989 1.36839 1.46199 1.05625 1.53163 1.31317 1.21829 0.91865 0.95375 0.87309 0.88861 1.22802 0.98236 0.99362 0.96872 1.22469 0.92862 1.02339 0.97189 1.22159 0.94909 0.99510 0.95018 0.90634 1.20692 0.87965 0.93573 0.94524 1.42334 1.15455 1.15330 1.64444 1.19194 0.92878 0.97164 1.27903 0.91306 1.24728 0.98752 0.96338 1.01153 1.69646 1.35370 1.10245 1.43007 0.86271 0.83700 0.78225 0.78012 1.21310 1.21694 1.21291 1.22445 0.92532 1.01830 0.99316 1.22307 1.01852 0.97912 0.96333 1.18942 0.86676 0.90492 0.90312 1.84825 1.76862 1.39316 1.27534 1.66787 1.09920 1.17931 1.25929 0.92621 0.92533 0.92592 0.92039 0.90775 0.89506 0.89659 0.82996 0.76409 0.91425 0.91332 0.91078 0.90785 0.96249 0.96553 0.78273 0.93500 0.90292 0.91370 0.83637 0.73928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.74 5.79 -26.73 -0.15 -0.89 16 3 C -0.07 -0.42 5.61 -27.88 -0.16 -0.58 16 4 C 0.15 1.29 6.17 -82.65 -0.51 0.78 16 5 C -0.12 -1.11 9.27 -39.03 -0.36 -1.47 16 6 C -0.07 -0.62 5.91 -104.68 -0.62 -1.24 16 7 C 0.56 6.27 7.80 -12.18 -0.09 6.17 16 8 O -0.53 -7.63 16.10 5.35 0.09 -7.54 16 9 N -0.71 -6.94 4.99 -53.56 -0.27 -7.21 16 10 C 0.14 1.59 3.25 -66.82 -0.22 1.38 16 11 H 0.09 1.16 7.56 -51.93 -0.39 0.77 16 12 C -0.13 -1.69 6.53 -25.08 -0.16 -1.85 16 13 C -0.11 -1.64 6.19 -24.74 -0.15 -1.79 16 14 C -0.10 -1.45 2.88 -88.96 -0.26 -1.71 16 15 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.16 3.11 5.55 -4.04 -0.02 3.09 16 17 N -0.73 -18.29 5.49 -59.91 -0.33 -18.62 16 18 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 22 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C -0.12 -1.41 6.14 -25.61 -0.16 -1.57 16 27 C -0.16 -1.29 9.55 -38.84 -0.37 -1.67 16 28 C 0.31 2.77 7.74 -17.17 -0.13 2.63 16 29 O -0.48 -3.54 13.56 -18.75 -0.25 -3.80 16 30 N -0.49 -4.65 9.88 -9.59 -0.09 -4.74 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.56 7.95 -51.93 -0.41 0.14 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.39 7.86 -51.93 -0.41 -0.02 16 38 H 0.15 1.25 7.62 -52.49 -0.40 0.85 16 39 H 0.40 2.96 6.46 -40.82 -0.26 2.69 16 40 H 0.07 0.83 8.05 -51.92 -0.42 0.42 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.10 7.97 -51.92 -0.41 0.69 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.02 0.39 8.03 -51.93 -0.42 -0.03 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.38 10.06 7.64 -40.82 -0.31 9.75 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 49 H 0.07 0.67 7.62 -51.93 -0.40 0.27 16 50 H 0.15 0.83 6.53 -52.49 -0.34 0.49 16 51 H 0.40 0.95 9.06 45.56 0.41 1.37 16 LS Contribution 417.33 15.07 6.29 6.29 Total: -1.00 -34.55 417.33 -9.64 -44.19 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.52 Total: 7.97 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.25 Total: -6.46 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.03 Total: -58.03 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.17 Total: -11.34 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.55 -9.64 -44.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755740928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.737 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds