Wall clock time and date at job start Wed Apr 1 2020 04:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47340 * 2 1 4 4 C 1.50706 * 109.46925 * 180.02562 * 3 2 1 5 5 C 1.38029 * 119.50879 * 125.00367 * 4 3 2 6 6 C 1.39919 * 119.12606 * 179.97438 * 5 4 3 7 7 C 1.48162 * 120.88839 * 179.97438 * 6 5 4 8 8 O 1.21515 * 120.00464 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00276 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00314 * 180.02562 * 9 7 6 11 11 H 1.09006 * 110.01574 * 33.61278 * 10 9 7 12 12 C 1.54265 * 110.03517 * 272.16815 * 10 9 7 13 13 C 1.54878 * 104.19688 * 217.10699 * 12 10 9 14 14 C 1.54888 * 102.75271 * 37.93852 * 13 12 10 15 15 H 1.09003 * 110.48756 * 80.73593 * 14 13 12 16 16 C 1.53002 * 110.60115 * 203.32671 * 14 13 12 17 17 N 1.46502 * 109.47076 * 289.83800 * 16 14 13 18 18 C 1.36938 * 119.99849 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99781 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99761 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00037 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99954 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47192 * 60.00143 * 22 20 18 24 24 H 1.48497 * 109.47213 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47140 * 299.99892 * 22 20 18 26 26 C 1.53871 * 110.03384 * 154.99690 * 10 9 7 27 27 C 1.39612 * 118.22175 * 359.97438 * 6 5 4 28 28 C 1.38852 * 118.94807 * 0.02562 * 27 6 5 29 29 O 1.35684 * 119.61901 * 179.97438 * 28 27 6 30 30 N 1.31874 * 119.51456 * 304.72903 * 4 3 2 31 31 H 1.09000 * 109.47196 * 59.99588 * 1 2 3 32 32 H 1.09001 * 109.47364 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46785 * 299.99692 * 1 2 3 34 34 H 1.09004 * 109.46785 * 240.00308 * 2 1 3 35 35 H 1.09004 * 109.47694 * 120.00406 * 2 1 3 36 36 H 1.09000 * 109.46497 * 60.00561 * 3 2 1 37 37 H 1.09000 * 109.47312 * 300.00340 * 3 2 1 38 38 H 1.07993 * 120.43457 * 359.95296 * 5 4 3 39 39 H 0.96998 * 119.99835 * 359.97438 * 9 7 6 40 40 H 1.09010 * 110.47995 * 335.78099 * 12 10 9 41 41 H 1.08994 * 110.48744 * 98.42109 * 12 10 9 42 42 H 1.09007 * 110.75625 * 279.62227 * 13 12 10 43 43 H 1.09001 * 110.76060 * 156.25347 * 13 12 10 44 44 H 1.08998 * 109.46782 * 49.83873 * 16 14 13 45 45 H 1.09001 * 109.46696 * 169.83977 * 16 14 13 46 46 H 0.96997 * 119.99712 * 0.02562 * 17 16 14 47 47 H 0.96999 * 120.00269 * 179.97438 * 21 20 18 48 48 H 1.08998 * 110.03875 * 238.57261 * 26 10 9 49 49 H 1.08999 * 110.03133 * 0.02562 * 26 10 9 50 50 H 1.08002 * 120.52553 * 180.02562 * 27 6 5 51 51 H 0.96703 * 114.00059 * 89.99915 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2266 2.1316 -0.9848 6 6 5.6258 2.1265 -0.9774 7 6 6.3945 2.8526 -2.0152 8 8 5.8101 3.4637 -2.8880 9 7 7.7420 2.8354 -1.9913 10 6 8.5021 3.5538 -3.0172 11 1 7.9666 4.4552 -3.3155 12 6 8.7290 2.6431 -4.2415 13 6 10.1557 3.0040 -4.7241 14 6 10.9210 3.2228 -3.3953 15 1 11.2246 2.2671 -2.9681 16 6 12.1402 4.1200 -3.6177 17 7 13.1491 3.3903 -4.3897 18 6 14.3340 3.9959 -4.7128 19 1 14.5249 5.0113 -4.3982 20 6 15.2898 3.3047 -5.4448 21 7 15.0568 2.0675 -5.8287 22 14 16.9064 4.1305 -5.8849 23 1 17.6187 4.5187 -4.6411 24 1 17.7480 3.1873 -6.6641 25 1 16.6374 5.3423 -6.7001 26 6 9.8957 3.9224 -2.4792 27 6 6.2781 1.4191 0.0341 28 6 5.5179 0.7525 0.9858 29 8 6.1378 0.0603 1.9745 30 7 4.1971 0.7884 0.9422 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6767 1.9562 0.8901 37 1 1.6767 1.9564 -0.8899 38 1 3.6854 2.6673 -1.7505 39 1 8.2085 2.3480 -1.2945 40 1 8.6786 1.5937 -3.9509 41 1 7.9969 2.8601 -5.0193 42 1 10.1431 3.9182 -5.3177 43 1 10.5920 2.1808 -5.2899 44 1 11.8391 5.0129 -4.1655 45 1 12.5592 4.4090 -2.6538 46 1 12.9774 2.4786 -4.6726 47 1 15.7245 1.5846 -6.3405 48 1 10.0370 5.0026 -2.5172 49 1 10.0067 3.5664 -1.4550 50 1 7.3570 1.3906 0.0756 51 1 6.3174 0.5833 2.7679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755740928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:53 Heat of formation + Delta-G solvation = -78.337384 kcal Electronic energy + Delta-G solvation = -29340.595170 eV Core-core repulsion = 25238.351426 eV Total energy + Delta-G solvation = -4102.243744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.00821 -40.81224 -39.23606 -38.32424 -36.49844 -35.89835 -34.93245 -33.67335 -32.79787 -31.66009 -30.16244 -29.11465 -27.92389 -26.43756 -25.32390 -23.97806 -23.89658 -22.65531 -21.53671 -21.40250 -20.98332 -19.83917 -19.06765 -18.35380 -18.08294 -17.19446 -16.81309 -16.73743 -16.62052 -16.11426 -15.91555 -15.78119 -15.61617 -15.34498 -15.08003 -14.94062 -14.63184 -14.52198 -14.37408 -13.69778 -13.56663 -13.34825 -13.15531 -13.02764 -12.91406 -12.76527 -12.73193 -12.43964 -12.38546 -12.20917 -12.07732 -12.04374 -11.81915 -11.63169 -11.59227 -11.54604 -11.49744 -11.37517 -11.04529 -10.88822 -10.53134 -10.17391 -9.92015 -8.96523 -7.93686 -5.21718 -0.48434 -0.14935 1.47874 1.50694 1.56833 1.66498 1.91075 2.43506 2.57341 2.63726 3.31209 3.39730 3.41314 3.57130 3.62957 3.82796 3.84666 3.88972 4.06759 4.15602 4.17871 4.20945 4.35763 4.40982 4.48851 4.51446 4.56248 4.60963 4.66500 4.68629 4.77764 4.79440 4.85206 4.86871 4.93372 4.99665 5.05702 5.07418 5.14732 5.20054 5.22901 5.33404 5.37556 5.40169 5.47640 5.48153 5.51154 5.57145 6.28855 6.36466 6.55139 6.81096 7.01312 7.35327 8.13394 8.35871 9.29640 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024533 B = 0.001611 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.057389 B =17377.273835 C =17875.226380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.069 4.069 4 C 0.150 3.850 5 C -0.131 4.131 6 C -0.076 4.076 7 C 0.559 3.441 8 O -0.563 6.563 9 N -0.700 5.700 10 C 0.148 3.852 11 H 0.087 0.913 12 C -0.125 4.125 13 C -0.110 4.110 14 C -0.089 4.089 15 H 0.073 0.927 16 C 0.157 3.843 17 N -0.744 5.744 18 C -0.247 4.247 19 H 0.075 0.925 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.279 1.279 26 C -0.110 4.110 27 C -0.154 4.154 28 C 0.309 3.691 29 O -0.487 6.487 30 N -0.504 5.504 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.154 0.846 39 H 0.414 0.586 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.169 0.831 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.324 -1.103 17.365 33.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.107 4.107 4 C 0.013 3.987 5 C -0.152 4.152 6 C -0.086 4.086 7 C 0.346 3.654 8 O -0.442 6.442 9 N -0.352 5.352 10 C 0.044 3.956 11 H 0.105 0.895 12 C -0.163 4.163 13 C -0.148 4.148 14 C -0.108 4.108 15 H 0.091 0.909 16 C 0.031 3.969 17 N -0.387 5.387 18 C -0.379 4.379 19 H 0.092 0.908 20 C -0.267 4.267 21 N -0.620 5.620 22 Si 0.801 3.199 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.205 1.205 26 C -0.148 4.148 27 C -0.176 4.176 28 C 0.130 3.870 29 O -0.297 6.297 30 N -0.224 5.224 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.172 0.828 39 H 0.253 0.747 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.103 0.897 49 H 0.113 0.887 50 H 0.187 0.813 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -29.012 -1.415 17.043 33.677 hybrid contribution 1.978 0.332 -0.627 2.101 sum -27.034 -1.083 16.416 31.647 Atomic orbital electron populations 1.21759 0.94212 1.02168 1.02535 1.21400 0.96762 0.95248 1.01831 1.20755 0.86049 0.98925 1.04971 1.21315 0.97798 0.90955 0.88637 1.22262 0.93279 0.99807 0.99846 1.20227 0.94574 0.98395 0.95446 1.18328 0.82736 0.80090 0.84241 1.90779 1.70339 1.44680 1.38394 1.46041 1.05234 1.52748 1.31129 1.21602 0.91908 0.94911 0.87177 0.89534 1.22700 0.96352 0.99929 0.97369 1.22385 0.94362 1.01063 0.96958 1.22034 0.93979 0.98861 0.95922 0.90891 1.20883 0.88435 0.93933 0.93657 1.42557 1.15912 1.15221 1.65006 1.19624 0.93860 0.97411 1.26997 0.90752 1.25542 1.02256 0.97065 1.01867 1.69806 1.36291 1.11698 1.44207 0.85231 0.79618 0.77189 0.77848 1.20318 1.22198 1.20517 1.22340 0.90944 1.01834 0.99725 1.22449 1.02928 0.96935 0.95291 1.19110 0.86637 0.90406 0.90820 1.84781 1.76620 1.39995 1.28339 1.66839 1.10584 1.18467 1.26521 0.91899 0.92525 0.91974 0.92962 0.92246 0.88598 0.88144 0.82786 0.74737 0.90907 0.91741 0.92061 0.92952 0.96332 0.96022 0.79428 0.94076 0.89713 0.88743 0.81329 0.71534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.56 16 2 C -0.11 -1.36 5.79 30.59 0.18 -1.18 16 3 C -0.07 -0.76 5.61 29.85 0.17 -0.59 16 4 C 0.15 2.39 6.17 42.50 0.26 2.65 16 5 C -0.13 -2.22 9.27 22.63 0.21 -2.01 16 6 C -0.08 -1.32 5.91 -19.90 -0.12 -1.44 16 7 C 0.56 11.79 7.80 86.88 0.68 12.47 16 8 O -0.56 -15.95 16.10 -3.76 -0.06 -16.01 16 9 N -0.70 -12.05 4.99 -441.66 -2.21 -14.25 16 10 C 0.15 3.10 3.25 45.71 0.15 3.25 16 11 H 0.09 2.02 7.56 -2.38 -0.02 2.00 16 12 C -0.12 -3.02 6.53 31.66 0.21 -2.82 16 13 C -0.11 -3.24 6.19 31.88 0.20 -3.05 16 14 C -0.09 -2.57 2.88 -9.72 -0.03 -2.60 16 15 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 16 C 0.16 5.99 5.55 86.38 0.48 6.47 16 17 N -0.74 -37.39 5.49 -343.45 -1.89 -39.27 16 18 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 19 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 20 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 21 N -0.97 -59.33 13.06 21.65 0.28 -59.04 16 22 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 26 C -0.11 -2.25 6.14 31.32 0.19 -2.06 16 27 C -0.15 -2.15 9.55 22.75 0.22 -1.93 16 28 C 0.31 4.94 7.74 84.78 0.66 5.59 16 29 O -0.49 -6.30 13.56 -90.02 -1.22 -7.52 16 30 N -0.50 -9.11 9.88 -297.15 -2.94 -12.04 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.06 0.88 7.95 -2.39 -0.02 0.86 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.78 7.86 -2.39 -0.02 0.76 16 38 H 0.15 2.46 7.62 -2.91 -0.02 2.44 16 39 H 0.41 4.80 6.46 -92.71 -0.60 4.20 16 40 H 0.07 1.70 8.05 -2.38 -0.02 1.68 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.92 7.97 -2.38 -0.02 1.90 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.02 0.72 8.03 -2.39 -0.02 0.70 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.37 19.98 7.64 -92.71 -0.71 19.27 16 47 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 48 H 0.08 1.70 7.84 -2.39 -0.02 1.69 16 49 H 0.09 1.48 7.62 -2.39 -0.02 1.46 16 50 H 0.17 1.40 6.53 -2.91 -0.02 1.39 16 51 H 0.42 1.13 9.06 -74.06 -0.67 0.46 16 Total: -1.00 -74.37 417.33 -1.55 -75.92 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -1.02 Total: 28.73 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.47 Total: -4.60 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -6.75 Total: -124.61 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -1.28 Total: -23.53 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -74.37 -1.55 -75.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755740928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.417 kcal (2) G-P(sol) polarization free energy of solvation -74.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds