Wall clock time and date at job start Wed Apr 1 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47227 * 2 1 4 4 C 1.52999 * 109.46875 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46935 * 179.97438 * 4 3 2 6 6 C 1.46904 * 110.99632 * 66.04996 * 5 4 3 7 7 C 1.50700 * 109.46891 * 200.00662 * 6 5 4 8 8 N 1.34774 * 120.00324 * 185.76184 * 7 6 5 9 9 O 1.21285 * 120.00092 * 5.75873 * 7 6 5 10 10 C 1.46899 * 110.99978 * 189.99849 * 5 4 3 11 11 C 1.50699 * 109.46859 * 76.31425 * 10 5 4 12 12 O 1.21288 * 120.00057 * 5.65017 * 11 10 5 13 13 N 1.34778 * 119.99949 * 185.65440 * 11 10 5 14 14 C 1.46505 * 120.00270 * 184.30242 * 13 11 10 15 15 C 1.50700 * 109.47132 * 270.00560 * 14 13 11 16 16 H 1.07995 * 119.99868 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99596 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00466 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99990 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.46842 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47243 * 119.99422 * 19 17 15 22 22 H 1.48495 * 109.47150 * 240.00040 * 19 17 15 23 23 C 1.39924 * 119.99826 * 4.30699 * 13 11 10 24 24 C 1.38865 * 120.07419 * 68.13953 * 23 13 11 25 25 C 1.38117 * 119.93222 * 179.97438 * 24 23 13 26 26 C 1.38281 * 120.06626 * 359.97205 * 25 24 23 27 27 C 1.38279 * 120.14600 * 0.04791 * 26 25 24 28 28 C 1.38116 * 120.06926 * 359.95295 * 27 26 25 29 29 H 1.09001 * 109.47338 * 300.00157 * 1 2 3 30 30 H 1.09001 * 109.46921 * 60.00136 * 1 2 3 31 31 H 1.09004 * 109.47424 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46757 * 239.99352 * 2 1 3 33 33 H 1.09001 * 109.46921 * 119.99864 * 2 1 3 34 34 H 1.08999 * 109.47301 * 60.00191 * 3 2 1 35 35 H 1.09001 * 109.47059 * 299.99779 * 3 2 1 36 36 H 1.09001 * 109.47405 * 60.00018 * 4 3 2 37 37 H 1.08994 * 109.47375 * 299.99463 * 4 3 2 38 38 H 1.09004 * 109.47252 * 320.00199 * 6 5 4 39 39 H 1.08994 * 109.47372 * 80.00732 * 6 5 4 40 40 H 0.97005 * 120.00077 * 359.97438 * 8 7 6 41 41 H 0.96996 * 120.00665 * 180.02562 * 8 7 6 42 42 H 1.08994 * 109.47456 * 316.30879 * 10 5 4 43 43 H 1.08997 * 109.47153 * 196.30960 * 10 5 4 44 44 H 1.09001 * 109.46269 * 29.99878 * 14 13 11 45 45 H 1.08989 * 109.46902 * 149.99726 * 14 13 11 46 46 H 0.96996 * 120.00554 * 180.02562 * 18 17 15 47 47 H 1.08005 * 120.03591 * 359.70109 * 24 23 13 48 48 H 1.07994 * 119.96607 * 179.97438 * 25 24 23 49 49 H 1.08001 * 119.92863 * 180.02562 * 26 25 24 50 50 H 1.07994 * 119.96694 * 179.97438 * 27 26 25 51 51 H 1.08002 * 120.03723 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.7098 3.5100 1.2529 7 6 3.7701 5.0015 1.0461 8 7 3.6001 5.8343 2.0919 9 8 3.9718 5.4525 -0.0616 10 6 5.5087 2.8733 -0.2375 11 6 5.7859 2.6327 -1.6991 12 8 4.8658 2.5438 -2.4843 13 7 7.0563 2.5161 -2.1337 14 6 7.3307 2.3766 -3.5661 15 6 7.3363 0.9159 -3.9365 16 1 7.1542 0.1664 -3.1806 17 6 7.5750 0.5363 -5.2403 18 7 7.7973 1.4490 -6.1608 19 14 7.5826 -1.2744 -5.6995 20 1 7.3087 -2.0927 -4.4908 21 1 6.5343 -1.5309 -6.7195 22 1 8.9115 -1.6391 -6.2528 23 6 8.1133 2.5282 -1.2169 24 6 8.2777 1.4721 -0.3304 25 6 9.3223 1.4869 0.5730 26 6 10.2043 2.5516 0.5949 27 6 10.0432 3.6051 -0.2862 28 6 9.0006 3.5963 -1.1920 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9284 -0.8891 37 1 3.9330 0.9288 0.8908 38 1 2.7011 3.2253 1.5523 39 1 4.4150 3.2225 2.0326 40 1 3.4385 5.4737 2.9778 41 1 3.6386 6.7944 1.9588 42 1 5.9990 2.1026 0.3571 43 1 5.8929 3.8523 0.0488 44 1 6.5581 2.8930 -4.1358 45 1 8.3031 2.8130 -3.7939 46 1 7.9648 1.1820 -7.0781 47 1 7.5868 0.6421 -0.3443 48 1 9.4504 0.6660 1.2630 49 1 11.0206 2.5607 1.3020 50 1 10.7335 4.4353 -0.2663 51 1 8.8750 4.4196 -1.8797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048048355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:31 Heat of formation + Delta-G solvation = -37.730476 kcal Electronic energy + Delta-G solvation = -31661.514542 eV Core-core repulsion = 27561.031645 eV Total energy + Delta-G solvation = -4100.482896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.10452 -39.41336 -38.12164 -36.95946 -34.72617 -34.36554 -33.68239 -32.63124 -30.70492 -29.56976 -29.31430 -28.87727 -26.99132 -25.18319 -23.03320 -22.49539 -22.15288 -21.74445 -21.10826 -20.18476 -18.92392 -17.58514 -17.11260 -16.85329 -16.45443 -16.03341 -15.76600 -15.42255 -15.29548 -15.00672 -14.57160 -14.38832 -14.22599 -14.07319 -13.82715 -13.52121 -13.25577 -13.11591 -13.02132 -12.81855 -12.44015 -12.32292 -12.23086 -12.13262 -11.67910 -11.42484 -11.25696 -11.15554 -11.01201 -10.93441 -10.80033 -10.75862 -10.59660 -10.42298 -10.12334 -9.89328 -9.74096 -9.63771 -9.14872 -8.68539 -8.55721 -8.39085 -8.11281 -7.56211 -6.00259 -4.04274 1.59661 1.66095 2.66495 3.21420 3.32603 3.39138 3.42343 3.48242 3.69146 4.04989 4.19834 4.48457 4.79634 4.82689 4.93445 4.99782 5.07224 5.16546 5.18051 5.19423 5.21121 5.30143 5.34727 5.37683 5.49364 5.59262 5.63778 5.68592 5.70880 5.80718 5.83622 5.85417 6.05745 6.06292 6.10745 6.27837 6.32659 6.40776 6.61656 6.67651 6.74219 6.85409 6.87385 7.02940 7.09812 7.24756 7.29966 7.46403 7.58531 7.95678 8.25445 8.28825 8.47680 8.94297 9.14723 9.59865 11.08166 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007219 B = 0.004282 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3877.683169 B = 6537.233925 C = 8767.569773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.114 4.114 4 C 0.058 3.942 5 N -0.501 5.501 6 C 0.032 3.968 7 C 0.508 3.492 8 N -0.864 5.864 9 O -0.507 6.507 10 C 0.042 3.958 11 C 0.518 3.482 12 O -0.499 6.499 13 N -0.568 5.568 14 C 0.250 3.750 15 C -0.520 4.520 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.169 3.831 24 C -0.127 4.127 25 C -0.111 4.111 26 C -0.137 4.137 27 C -0.109 4.109 28 C -0.126 4.126 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.030 0.970 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.397 0.603 41 H 0.400 0.600 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.047 0.953 45 H 0.033 0.967 46 H 0.262 0.738 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.120 0.880 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 3.230 23.073 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.069 4.069 5 N -0.225 5.225 6 C -0.100 4.100 7 C 0.292 3.708 8 N -0.430 5.430 9 O -0.380 6.380 10 C -0.089 4.089 11 C 0.304 3.696 12 O -0.372 6.372 13 N -0.298 5.298 14 C 0.133 3.867 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 C 0.076 3.924 24 C -0.147 4.147 25 C -0.130 4.130 26 C -0.155 4.155 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.048 0.952 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.225 0.775 41 H 0.230 0.770 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.135 0.865 50 H 0.138 0.862 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.733 3.549 21.162 22.210 hybrid contribution 0.574 -1.175 0.703 1.485 sum -5.159 2.374 21.865 22.591 Atomic orbital electron populations 1.21749 0.95915 1.01350 1.01727 1.21489 0.95778 0.96834 1.02148 1.21619 0.94405 0.96581 1.02531 1.22234 0.95778 0.87478 1.01429 1.61125 1.13153 1.16400 1.31789 1.22043 1.03471 0.91879 0.92608 1.20701 0.76213 0.89358 0.84560 1.43900 1.77602 1.10321 1.11198 1.90838 1.45562 1.77842 1.23739 1.22054 0.88313 1.02644 0.95865 1.20076 0.82470 0.77432 0.89646 1.90688 1.42709 1.47432 1.56333 1.46005 1.03381 1.71432 1.09020 1.19386 0.97337 0.97567 0.72434 1.21388 1.48457 0.91888 0.94205 0.92457 1.24904 0.95176 0.97771 0.96156 1.69937 1.48531 1.32812 1.02065 0.86455 0.77521 0.85029 0.78488 1.19838 1.20856 1.21002 1.17763 0.90572 0.93113 0.90920 1.21355 0.99047 0.97346 0.96942 1.20948 0.94950 0.98321 0.98771 1.21033 0.99673 0.94825 0.99996 1.20969 0.97506 0.98648 0.95669 1.21375 0.95817 0.98022 0.99334 0.93086 0.92543 0.92956 0.91516 0.92388 0.92619 0.90451 0.89217 0.95186 0.87305 0.91973 0.77530 0.76956 0.92224 0.88671 0.93505 0.94884 0.92784 0.86125 0.86265 0.86472 0.86159 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.32 5.93 -26.73 -0.16 -1.48 16 3 C -0.11 -1.37 5.19 -26.73 -0.14 -1.50 16 4 C 0.06 0.81 4.60 -3.82 -0.02 0.79 16 5 N -0.50 -7.72 3.55 -237.52 -0.84 -8.56 16 6 C 0.03 0.34 5.32 -4.97 -0.03 0.32 16 7 C 0.51 6.33 7.55 -10.99 -0.08 6.25 16 8 N -0.86 -6.34 8.87 31.22 0.28 -6.07 16 9 O -0.51 -9.35 16.54 5.55 0.09 -9.26 16 10 C 0.04 0.71 3.95 -4.98 -0.02 0.69 16 11 C 0.52 11.53 7.11 -10.99 -0.08 11.45 16 12 O -0.50 -13.19 15.18 5.55 0.08 -13.11 16 13 N -0.57 -12.86 2.50 -114.74 -0.29 -13.15 16 14 C 0.25 6.83 5.08 -5.19 -0.03 6.80 16 15 C -0.52 -15.12 9.39 -34.44 -0.32 -15.44 16 16 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 19 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.17 3.18 4.45 -83.69 -0.37 2.81 16 24 C -0.13 -2.08 8.26 -39.39 -0.33 -2.41 16 25 C -0.11 -1.48 10.04 -39.61 -0.40 -1.88 16 26 C -0.14 -1.71 10.04 -39.55 -0.40 -2.11 16 27 C -0.11 -1.49 10.04 -39.61 -0.40 -1.89 16 28 C -0.13 -2.12 9.70 -39.39 -0.38 -2.50 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.55 6.25 -51.93 -0.32 0.22 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.57 6.94 -51.93 -0.36 1.21 16 37 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 38 H 0.11 0.93 5.87 -51.93 -0.31 0.63 16 39 H 0.06 0.52 7.99 -51.93 -0.42 0.10 16 40 H 0.40 1.47 8.83 -40.82 -0.36 1.11 16 41 H 0.40 2.71 8.93 -40.82 -0.36 2.34 16 42 H 0.06 0.89 6.31 -51.93 -0.33 0.56 16 43 H 0.10 1.60 6.96 -51.93 -0.36 1.24 16 44 H 0.05 1.43 7.49 -51.93 -0.39 1.04 16 45 H 0.03 0.92 7.87 -51.94 -0.41 0.51 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.12 1.98 7.96 -52.48 -0.42 1.56 16 48 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 49 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 50 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 51 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 419.52 15.07 6.32 6.32 Total: -1.00 -37.68 419.52 -9.74 -47.42 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.23 Total: 4.93 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -2.87 Total: 0.59 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.12 Total: -54.22 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.18 Total: -22.37 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -37.68 -9.74 -47.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048048355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.685 kcal (2) G-P(sol) polarization free energy of solvation -37.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds