Wall clock time and date at job start Wed Apr 1 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47227 * 2 1 4 4 C 1.52999 * 109.46875 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46935 * 179.97438 * 4 3 2 6 6 C 1.46904 * 110.99632 * 66.04996 * 5 4 3 7 7 C 1.50700 * 109.46891 * 200.00662 * 6 5 4 8 8 N 1.34774 * 120.00324 * 185.76184 * 7 6 5 9 9 O 1.21285 * 120.00092 * 5.75873 * 7 6 5 10 10 C 1.46899 * 110.99978 * 189.99849 * 5 4 3 11 11 C 1.50699 * 109.46859 * 76.31425 * 10 5 4 12 12 O 1.21288 * 120.00057 * 5.65017 * 11 10 5 13 13 N 1.34778 * 119.99949 * 185.65440 * 11 10 5 14 14 C 1.46505 * 120.00270 * 184.30242 * 13 11 10 15 15 C 1.50700 * 109.47132 * 270.00560 * 14 13 11 16 16 H 1.07995 * 119.99868 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99596 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00466 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99990 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.46842 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47243 * 119.99422 * 19 17 15 22 22 H 1.48495 * 109.47150 * 240.00040 * 19 17 15 23 23 C 1.39924 * 119.99826 * 4.30699 * 13 11 10 24 24 C 1.38865 * 120.07419 * 68.13953 * 23 13 11 25 25 C 1.38117 * 119.93222 * 179.97438 * 24 23 13 26 26 C 1.38281 * 120.06626 * 359.97205 * 25 24 23 27 27 C 1.38279 * 120.14600 * 0.04791 * 26 25 24 28 28 C 1.38116 * 120.06926 * 359.95295 * 27 26 25 29 29 H 1.09001 * 109.47338 * 300.00157 * 1 2 3 30 30 H 1.09001 * 109.46921 * 60.00136 * 1 2 3 31 31 H 1.09004 * 109.47424 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46757 * 239.99352 * 2 1 3 33 33 H 1.09001 * 109.46921 * 119.99864 * 2 1 3 34 34 H 1.08999 * 109.47301 * 60.00191 * 3 2 1 35 35 H 1.09001 * 109.47059 * 299.99779 * 3 2 1 36 36 H 1.09001 * 109.47405 * 60.00018 * 4 3 2 37 37 H 1.08994 * 109.47375 * 299.99463 * 4 3 2 38 38 H 1.09004 * 109.47252 * 320.00199 * 6 5 4 39 39 H 1.08994 * 109.47372 * 80.00732 * 6 5 4 40 40 H 0.97005 * 120.00077 * 359.97438 * 8 7 6 41 41 H 0.96996 * 120.00665 * 180.02562 * 8 7 6 42 42 H 1.08994 * 109.47456 * 316.30879 * 10 5 4 43 43 H 1.08997 * 109.47153 * 196.30960 * 10 5 4 44 44 H 1.09001 * 109.46269 * 29.99878 * 14 13 11 45 45 H 1.08989 * 109.46902 * 149.99726 * 14 13 11 46 46 H 0.96996 * 120.00554 * 180.02562 * 18 17 15 47 47 H 1.08005 * 120.03591 * 359.70109 * 24 23 13 48 48 H 1.07994 * 119.96607 * 179.97438 * 25 24 23 49 49 H 1.08001 * 119.92863 * 180.02562 * 26 25 24 50 50 H 1.07994 * 119.96694 * 179.97438 * 27 26 25 51 51 H 1.08002 * 120.03723 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.7098 3.5100 1.2529 7 6 3.7701 5.0015 1.0461 8 7 3.6001 5.8343 2.0919 9 8 3.9718 5.4525 -0.0616 10 6 5.5087 2.8733 -0.2375 11 6 5.7859 2.6327 -1.6991 12 8 4.8658 2.5438 -2.4843 13 7 7.0563 2.5161 -2.1337 14 6 7.3307 2.3766 -3.5661 15 6 7.3363 0.9159 -3.9365 16 1 7.1542 0.1664 -3.1806 17 6 7.5750 0.5363 -5.2403 18 7 7.7973 1.4490 -6.1608 19 14 7.5826 -1.2744 -5.6995 20 1 7.3087 -2.0927 -4.4908 21 1 6.5343 -1.5309 -6.7195 22 1 8.9115 -1.6391 -6.2528 23 6 8.1133 2.5282 -1.2169 24 6 8.2777 1.4721 -0.3304 25 6 9.3223 1.4869 0.5730 26 6 10.2043 2.5516 0.5949 27 6 10.0432 3.6051 -0.2862 28 6 9.0006 3.5963 -1.1920 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9284 -0.8891 37 1 3.9330 0.9288 0.8908 38 1 2.7011 3.2253 1.5523 39 1 4.4150 3.2225 2.0326 40 1 3.4385 5.4737 2.9778 41 1 3.6386 6.7944 1.9588 42 1 5.9990 2.1026 0.3571 43 1 5.8929 3.8523 0.0488 44 1 6.5581 2.8930 -4.1358 45 1 8.3031 2.8130 -3.7939 46 1 7.9648 1.1820 -7.0781 47 1 7.5868 0.6421 -0.3443 48 1 9.4504 0.6660 1.2630 49 1 11.0206 2.5607 1.3020 50 1 10.7335 4.4353 -0.2663 51 1 8.8750 4.4196 -1.8797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048048355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:30 Heat of formation + Delta-G solvation = -65.937003 kcal Electronic energy + Delta-G solvation = -31662.737668 eV Core-core repulsion = 27561.031645 eV Total energy + Delta-G solvation = -4101.706023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.53184 -40.53571 -39.47240 -38.16404 -36.41855 -35.40598 -34.78314 -34.56731 -31.89656 -31.09638 -30.48961 -29.96430 -28.73947 -26.48894 -24.82434 -23.80481 -23.34014 -22.98305 -22.04333 -21.15802 -20.43131 -18.77048 -18.60673 -18.30536 -17.78986 -17.42516 -17.09211 -16.68187 -16.61125 -16.37722 -15.98202 -15.69109 -15.41547 -15.36911 -15.00697 -14.88715 -14.40350 -14.32021 -14.29214 -14.19186 -13.90145 -13.60735 -13.43832 -13.31962 -13.22764 -13.07282 -12.80690 -12.69305 -12.45754 -12.21211 -12.12166 -12.09737 -11.91623 -11.74476 -11.71590 -11.37938 -10.98234 -10.81402 -10.69136 -10.56877 -10.06735 -9.84387 -9.36009 -9.11556 -8.25501 -6.40917 0.37163 0.49527 1.32004 1.35246 1.46998 1.73285 1.77380 2.05029 2.35164 2.50326 2.86323 3.03537 3.05124 3.58925 3.91329 3.98501 4.06606 4.06797 4.12351 4.16173 4.25948 4.27152 4.31348 4.33711 4.37282 4.48142 4.60057 4.65521 4.68867 4.70961 4.77174 4.95364 4.97466 4.99495 5.08633 5.10469 5.15187 5.26207 5.42361 5.43138 5.47797 5.54135 5.61835 5.66823 5.77670 5.84319 5.95440 5.99612 6.05716 6.08864 6.61059 6.65493 6.78128 7.24224 7.44308 7.49279 8.82305 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007219 B = 0.004282 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3877.683169 B = 6537.233925 C = 8767.569773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.106 4.106 4 C 0.063 3.937 5 N -0.534 5.534 6 C 0.033 3.967 7 C 0.505 3.495 8 N -0.836 5.836 9 O -0.581 6.581 10 C 0.068 3.932 11 C 0.505 3.495 12 O -0.559 6.559 13 N -0.571 5.571 14 C 0.269 3.731 15 C -0.535 4.535 16 H 0.052 0.948 17 C 0.007 3.993 18 N -0.930 5.930 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.267 1.267 23 C 0.127 3.873 24 C -0.136 4.136 25 C -0.099 4.099 26 C -0.119 4.119 27 C -0.103 4.103 28 C -0.147 4.147 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.138 0.862 39 H 0.102 0.898 40 H 0.419 0.581 41 H 0.405 0.595 42 H 0.085 0.915 43 H 0.095 0.905 44 H -0.005 1.005 45 H 0.016 0.984 46 H 0.268 0.732 47 H 0.114 0.886 48 H 0.158 0.842 49 H 0.163 0.837 50 H 0.151 0.849 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 1.543 28.140 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.144 4.144 4 C -0.064 4.064 5 N -0.259 5.259 6 C -0.097 4.097 7 C 0.289 3.711 8 N -0.402 5.402 9 O -0.460 6.460 10 C -0.062 4.062 11 C 0.294 3.706 12 O -0.436 6.436 13 N -0.300 5.300 14 C 0.149 3.851 15 C -0.574 4.574 16 H 0.071 0.929 17 C -0.192 4.192 18 N -0.570 5.570 19 Si 0.795 3.205 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.192 1.192 23 C 0.036 3.964 24 C -0.156 4.156 25 C -0.117 4.117 26 C -0.137 4.137 27 C -0.121 4.121 28 C -0.167 4.167 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.156 0.844 39 H 0.120 0.880 40 H 0.251 0.749 41 H 0.236 0.764 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.014 0.986 45 H 0.034 0.966 46 H 0.077 0.923 47 H 0.132 0.868 48 H 0.176 0.824 49 H 0.180 0.820 50 H 0.168 0.832 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.468 1.879 26.356 26.798 hybrid contribution 0.250 -0.542 -0.770 0.975 sum -4.218 1.336 25.586 25.965 Atomic orbital electron populations 1.21736 0.94737 1.02085 1.01966 1.21477 0.96783 0.95738 1.02006 1.21567 0.93038 0.97524 1.02240 1.22158 0.96874 0.86829 1.00569 1.60930 1.12032 1.17615 1.35333 1.22205 1.06038 0.90158 0.91294 1.21103 0.75184 0.90540 0.84253 1.43650 1.75121 1.10242 1.11197 1.90829 1.49380 1.79003 1.26752 1.21760 0.90006 1.03048 0.91436 1.21227 0.81536 0.75827 0.91975 1.90636 1.44404 1.50173 1.58413 1.45847 1.05145 1.71204 1.07819 1.18754 0.94376 0.96344 0.75607 1.21588 1.48802 0.92336 0.94659 0.92931 1.25896 0.94360 1.03036 0.95890 1.70070 1.49004 1.35323 1.02571 0.85322 0.78186 0.78719 0.78322 1.18899 1.20518 1.19220 1.18052 0.90795 0.95486 0.92025 1.21381 1.00414 0.96311 0.97495 1.21364 0.93104 0.99496 0.97752 1.21559 0.99772 0.93121 0.99206 1.21323 0.96303 1.00108 0.94371 1.21409 0.97175 0.97420 1.00650 0.91219 0.93935 0.91994 0.94032 0.90137 0.89382 0.94112 0.94107 0.91769 0.84417 0.88007 0.74892 0.76379 0.89777 0.88714 0.98647 0.96559 0.92342 0.86837 0.82434 0.81986 0.83156 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.12 -2.52 5.93 30.59 0.18 -2.34 16 3 C -0.11 -2.52 5.19 30.59 0.16 -2.36 16 4 C 0.06 1.77 4.60 86.30 0.40 2.16 16 5 N -0.53 -16.67 3.55 -905.38 -3.21 -19.89 16 6 C 0.03 0.64 5.32 85.56 0.45 1.09 16 7 C 0.50 12.08 7.55 87.66 0.66 12.74 16 8 N -0.84 -10.28 8.87 -173.53 -1.54 -11.82 16 9 O -0.58 -22.39 16.54 -3.05 -0.05 -22.44 16 10 C 0.07 2.39 3.95 85.56 0.34 2.72 16 11 C 0.51 24.54 7.11 87.66 0.62 25.17 16 12 O -0.56 -32.83 15.18 -3.05 -0.05 -32.87 16 13 N -0.57 -28.12 2.50 -635.30 -1.59 -29.71 16 14 C 0.27 16.13 5.08 85.63 0.43 16.57 16 15 C -0.54 -33.06 9.39 25.60 0.24 -32.82 16 16 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 17 C 0.01 0.42 5.46 84.65 0.46 0.88 16 18 N -0.93 -59.31 13.29 21.45 0.28 -59.03 16 19 Si 0.97 47.07 29.54 68.60 2.03 49.10 16 20 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.13 4.98 4.45 38.15 0.17 5.15 16 24 C -0.14 -4.35 8.26 22.39 0.18 -4.16 16 25 C -0.10 -2.23 10.04 22.25 0.22 -2.01 16 26 C -0.12 -2.39 10.04 22.29 0.22 -2.17 16 27 C -0.10 -2.54 10.04 22.25 0.22 -2.32 16 28 C -0.15 -5.09 9.70 22.39 0.22 -4.87 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.49 6.25 -2.39 -0.01 1.48 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 1.54 6.94 -2.39 -0.02 1.52 16 37 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 38 H 0.14 1.82 5.87 -2.39 -0.01 1.80 16 39 H 0.10 1.21 7.99 -2.39 -0.02 1.19 16 40 H 0.42 1.48 8.83 -92.70 -0.82 0.66 16 41 H 0.41 4.78 8.93 -92.71 -0.83 3.95 16 42 H 0.08 2.45 6.31 -2.39 -0.02 2.43 16 43 H 0.09 3.29 6.96 -2.39 -0.02 3.28 16 44 H 0.00 -0.31 7.49 -2.39 -0.02 -0.33 16 45 H 0.02 1.01 7.87 -2.39 -0.02 0.99 16 46 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 47 H 0.11 3.70 7.96 -2.91 -0.02 3.68 16 48 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 49 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 50 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 51 H 0.10 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -94.47 419.52 1.08 -93.40 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -0.70 Total: 21.68 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 5.91 Total: 11.58 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -6.06 Total: -120.44 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -0.10 Total: -55.31 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -94.47 1.08 -93.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048048355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.461 kcal (2) G-P(sol) polarization free energy of solvation -94.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds