Wall clock time and date at job start Wed Apr 1 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20756 * 120.00310 * 2 1 4 4 C 1.50704 * 119.99966 * 179.97438 * 2 1 3 5 5 H 1.09005 * 109.47191 * 36.92130 * 4 2 1 6 6 N 1.46499 * 109.46869 * 156.91433 * 4 2 1 7 7 C 1.34769 * 120.00548 * 275.00150 * 6 4 2 8 8 O 1.21292 * 119.99937 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00424 * 180.02562 * 7 6 4 10 10 N 1.46898 * 109.46943 * 178.03479 * 9 7 6 11 11 C 1.46900 * 111.00261 * 287.31201 * 10 9 7 12 12 C 1.50701 * 109.47416 * 293.93401 * 11 10 9 13 13 H 1.08001 * 119.99757 * 4.55930 * 12 11 10 14 14 C 1.37871 * 120.00258 * 184.56244 * 12 11 10 15 15 N 1.31514 * 119.99999 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99758 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46697 * 90.00598 * 16 14 12 18 18 H 1.48501 * 109.46934 * 210.00319 * 16 14 12 19 19 H 1.48493 * 109.47158 * 330.00189 * 16 14 12 20 20 C 1.46904 * 110.99552 * 163.36524 * 10 9 7 21 21 C 1.50702 * 109.46862 * 189.99977 * 20 10 9 22 22 C 1.38231 * 119.61728 * 95.02289 * 21 20 10 23 23 C 1.38634 * 119.15585 * 179.74930 * 22 21 20 24 24 C 1.38668 * 118.42179 * 0.46423 * 23 22 21 25 25 C 1.38182 * 119.16559 * 359.51216 * 24 23 22 26 26 N 1.31857 * 119.61769 * 274.99342 * 21 20 10 27 27 C 1.52997 * 109.47001 * 276.91785 * 4 2 1 28 28 C 1.53006 * 109.46785 * 178.20815 * 27 4 2 29 29 C 1.52998 * 109.47412 * 298.20466 * 27 4 2 30 30 H 1.09002 * 109.47281 * 245.03141 * 1 2 3 31 31 H 1.08997 * 109.47107 * 5.03165 * 1 2 3 32 32 H 1.09000 * 109.46973 * 125.03620 * 1 2 3 33 33 H 0.97003 * 119.99468 * 95.00217 * 6 4 2 34 34 H 1.09004 * 109.47094 * 58.03485 * 9 7 6 35 35 H 1.08994 * 109.46711 * 298.03494 * 9 7 6 36 36 H 1.09003 * 109.46777 * 53.92969 * 11 10 9 37 37 H 1.08995 * 109.47275 * 173.93228 * 11 10 9 38 38 H 0.97001 * 119.99406 * 179.97438 * 15 14 12 39 39 H 1.08992 * 109.47522 * 69.99758 * 20 10 9 40 40 H 1.09002 * 109.47277 * 309.99522 * 20 10 9 41 41 H 1.07991 * 120.42402 * 359.94642 * 22 21 20 42 42 H 1.08005 * 120.78391 * 180.22966 * 23 22 21 43 43 H 1.08007 * 120.41994 * 179.78278 * 24 23 22 44 44 H 1.07997 * 119.61931 * 180.25085 * 25 24 23 45 45 H 1.08997 * 109.46948 * 58.21132 * 27 4 2 46 46 H 1.09000 * 109.47020 * 65.08773 * 28 27 4 47 47 H 1.08995 * 109.46901 * 185.08659 * 28 27 4 48 48 H 1.09000 * 109.47144 * 305.08808 * 28 27 4 49 49 H 1.09002 * 109.47229 * 300.00546 * 29 27 4 50 50 H 1.09001 * 109.46726 * 60.00031 * 29 27 4 51 51 H 1.08991 * 109.47521 * 180.02562 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7307 -2.0309 -0.6165 6 7 3.6050 -1.0929 -0.5411 7 6 3.8078 -1.1251 -1.8731 8 8 2.8770 -1.3292 -2.6235 9 6 5.1910 -0.9073 -2.4302 10 7 5.1556 -1.0369 -3.8931 11 6 4.9873 -2.4402 -4.2934 12 6 6.2090 -3.2267 -3.8938 13 1 6.9963 -2.7509 -3.3279 14 6 6.3219 -4.5537 -4.2507 15 7 7.3879 -5.2401 -3.9015 16 14 4.9599 -5.3767 -5.2291 17 1 5.2297 -5.2205 -6.6810 18 1 4.9087 -6.8211 -4.8877 19 1 3.6589 -4.7430 -4.8962 20 6 6.3600 -0.4566 -4.5021 21 6 6.1818 -0.3841 -5.9968 22 6 5.7248 0.7857 -6.5744 23 6 5.5694 0.8435 -7.9508 24 6 5.8714 -0.2855 -8.6971 25 6 6.3239 -1.4194 -8.0499 26 7 6.4641 -1.4370 -6.7386 27 6 2.3650 -1.8330 1.4328 28 6 3.0909 -3.1799 1.4281 29 6 3.1477 -0.8349 2.2884 30 1 -0.3634 -0.4338 0.9316 31 1 -0.3633 1.0237 -0.0901 32 1 -0.3633 -0.5900 -0.8414 33 1 4.3494 -0.9293 0.0590 34 1 5.8710 -1.6518 -2.0159 35 1 5.5377 0.0906 -2.1621 36 1 4.1095 -2.8563 -3.7988 37 1 4.8563 -2.4965 -5.3740 38 1 7.4670 -6.1738 -4.1524 39 1 7.2221 -1.0813 -4.2689 40 1 6.5202 0.5463 -4.1063 41 1 5.4948 1.6446 -5.9616 42 1 5.2177 1.7453 -8.4299 43 1 5.7587 -0.2773 -9.7712 44 1 6.5651 -2.3015 -8.6243 45 1 1.3649 -1.9607 1.8468 46 1 4.1202 -3.0368 1.0991 47 1 3.0860 -3.5987 2.4344 48 1 2.5837 -3.8637 0.7475 49 1 4.1478 -0.7072 1.8743 50 1 2.6306 0.1246 2.2917 51 1 3.2225 -1.2111 3.3086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081159896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:12 Heat of formation + Delta-G solvation = -24.342829 kcal Electronic energy + Delta-G solvation = -31686.011433 eV Core-core repulsion = 27586.109069 eV Total energy + Delta-G solvation = -4099.902364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.41810 -39.74368 -38.63076 -36.71624 -35.93812 -32.81494 -32.33205 -31.99343 -31.30256 -30.70661 -28.43107 -27.42681 -27.36380 -26.24344 -24.08637 -23.00730 -22.07435 -21.12568 -20.70568 -19.57956 -19.18065 -17.31386 -16.54840 -16.42120 -16.26976 -16.01966 -15.70758 -15.18122 -15.03027 -15.00997 -14.64570 -14.34564 -14.12762 -13.98775 -13.66064 -13.47170 -13.26925 -12.92172 -12.84814 -12.65864 -12.42237 -12.33680 -12.26741 -12.22932 -12.17749 -11.48628 -11.42337 -11.29533 -11.11417 -11.08152 -11.02577 -10.99046 -10.70138 -10.26990 -10.03381 -9.80973 -9.48526 -9.37417 -9.27026 -8.73061 -8.67932 -8.57530 -8.40741 -7.18943 -5.97044 -3.92661 1.55078 1.74752 1.90922 3.15669 3.29922 3.40343 3.45746 3.54931 4.04512 4.25060 4.50303 4.55724 4.68241 4.78903 4.82694 4.98253 5.07855 5.16333 5.18757 5.25722 5.27391 5.31596 5.39655 5.40915 5.45252 5.48825 5.56354 5.59704 5.65197 5.73989 5.75995 5.82604 5.85142 5.91102 6.04701 6.06120 6.13484 6.19489 6.24973 6.43708 6.54443 6.60432 6.72803 7.01236 7.15245 7.36813 7.46822 7.65026 7.74066 8.05974 8.07857 8.53805 8.64969 8.72494 9.01301 9.69283 11.16137 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010144 B = 0.003658 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.711211 B = 7651.757866 C = 9332.607152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.348 3.652 3 O -0.448 6.448 4 C 0.104 3.896 5 H 0.113 0.887 6 N -0.722 5.722 7 C 0.526 3.474 8 O -0.521 6.521 9 C 0.041 3.959 10 N -0.511 5.511 11 C 0.156 3.844 12 C -0.531 4.531 13 H 0.071 0.929 14 C 0.081 3.919 15 N -0.903 5.903 16 Si 0.872 3.128 17 H -0.276 1.276 18 H -0.292 1.292 19 H -0.266 1.266 20 C 0.102 3.898 21 C 0.157 3.843 22 C -0.163 4.163 23 C -0.085 4.085 24 C -0.188 4.188 25 C 0.095 3.905 26 N -0.444 5.444 27 C -0.093 4.093 28 C -0.147 4.147 29 C -0.154 4.154 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.401 0.599 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.260 0.740 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.148 0.852 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.057 0.943 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.924 10.640 7.126 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.221 3.779 3 O -0.321 6.321 4 C -0.003 4.003 5 H 0.131 0.869 6 N -0.378 5.378 7 C 0.313 3.687 8 O -0.395 6.395 9 C -0.091 4.091 10 N -0.235 5.235 11 C 0.029 3.971 12 C -0.570 4.570 13 H 0.089 0.911 14 C -0.121 4.121 15 N -0.542 5.542 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.218 1.218 19 H -0.191 1.191 20 C -0.026 4.026 21 C 0.019 3.981 22 C -0.183 4.183 23 C -0.111 4.111 24 C -0.208 4.208 25 C -0.063 4.063 26 N -0.153 5.153 27 C -0.112 4.112 28 C -0.204 4.204 29 C -0.211 4.211 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.236 0.764 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.165 0.835 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.293 10.377 6.774 15.489 hybrid contribution -0.041 -0.339 -0.571 0.665 sum -9.334 10.037 6.204 15.045 Atomic orbital electron populations 1.22330 0.94465 1.04944 1.04491 1.25137 0.92035 0.90721 0.70022 1.90375 1.72056 1.34818 1.34804 1.21421 0.85841 0.96484 0.96576 0.86918 1.45834 1.09003 1.75352 1.07563 1.20828 0.91788 0.75012 0.81101 1.90653 1.44279 1.46776 1.57784 1.21788 0.93362 1.02271 0.91632 1.62208 1.34984 1.21696 1.04608 1.20267 0.96951 0.82916 0.96923 1.21462 1.04282 0.95684 1.35578 0.91076 1.24750 0.95042 0.97250 0.95028 1.69920 1.27960 1.09187 1.47172 0.86900 0.83690 0.78169 0.81287 1.20136 1.21803 1.19081 1.20907 0.94674 0.99040 0.88006 1.21161 0.92344 0.88273 0.96325 1.21936 1.01346 0.99776 0.95256 1.21439 0.97489 0.98188 0.94029 1.22045 1.03023 0.94949 1.00799 1.22819 0.95244 0.97270 0.90932 1.67786 1.13218 1.28379 1.05898 1.21284 1.01176 0.96504 0.92270 1.21827 1.01377 0.95247 1.01977 1.21917 1.00693 0.98755 0.99778 0.88992 0.90104 0.88775 0.76358 0.89853 0.89577 0.94811 0.94843 0.93037 0.90681 0.91245 0.85319 0.85626 0.85646 0.83453 0.89498 0.91737 0.92210 0.92005 0.92117 0.92412 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.80 10.25 36.01 0.37 -1.43 16 2 C 0.35 4.28 5.47 -29.03 -0.16 4.13 16 3 O -0.45 -6.91 16.83 6.00 0.10 -6.81 16 4 C 0.10 1.25 2.03 -69.08 -0.14 1.11 16 5 H 0.11 1.47 7.58 -51.93 -0.39 1.08 16 6 N -0.72 -10.19 4.02 -54.93 -0.22 -10.41 16 7 C 0.53 9.69 7.44 -10.99 -0.08 9.61 16 8 O -0.52 -11.50 14.68 5.55 0.08 -11.42 16 9 C 0.04 0.75 5.32 -4.98 -0.03 0.73 16 10 N -0.51 -10.93 4.30 -238.96 -1.03 -11.96 16 11 C 0.16 3.95 3.53 -4.98 -0.02 3.93 16 12 C -0.53 -14.68 7.88 -34.44 -0.27 -14.95 16 13 H 0.07 2.07 6.22 -52.49 -0.33 1.74 16 14 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 15 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 16 Si 0.87 22.82 27.38 -169.99 -4.65 18.17 16 17 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 19 H -0.27 -6.99 6.67 56.52 0.38 -6.62 16 20 C 0.10 1.99 5.04 -4.97 -0.03 1.96 16 21 C 0.16 3.06 5.69 -82.58 -0.47 2.59 16 22 C -0.16 -2.61 9.72 -39.44 -0.38 -3.00 16 23 C -0.09 -1.20 10.18 -39.28 -0.40 -1.60 16 24 C -0.19 -2.72 10.11 -39.44 -0.40 -3.11 16 25 C 0.10 1.68 11.18 -17.55 -0.20 1.49 16 26 N -0.44 -9.47 8.90 -9.47 -0.08 -9.55 16 27 C -0.09 -0.83 2.75 -90.62 -0.25 -1.08 16 28 C -0.15 -1.41 8.98 37.16 0.33 -1.08 16 29 C -0.15 -1.30 8.75 37.16 0.33 -0.98 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.72 8.12 -51.93 -0.42 0.29 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 4.79 6.67 -40.82 -0.27 4.52 16 34 H 0.08 1.62 6.53 -51.93 -0.34 1.28 16 35 H 0.09 1.31 7.79 -51.93 -0.40 0.90 16 36 H 0.03 0.93 5.86 -51.93 -0.30 0.62 16 37 H 0.03 0.91 5.65 -51.93 -0.29 0.61 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 39 H 0.08 1.65 6.24 -51.93 -0.32 1.33 16 40 H 0.07 1.10 7.75 -51.93 -0.40 0.70 16 41 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 44 H 0.15 2.33 8.06 -52.49 -0.42 1.90 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.70 7.73 -51.93 -0.40 0.30 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.53 6.42 -51.93 -0.33 0.20 16 50 H 0.06 0.53 6.94 -51.93 -0.36 0.17 16 51 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 409.66 15.07 6.17 6.17 Total: -1.00 -36.73 409.66 -8.71 -45.44 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.96 Total: 6.63 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.89 Total: 0.56 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.56 Total: -58.75 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.18 Total: -18.23 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.65 Total: 18.17 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.73 -8.71 -45.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081159896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.099 kcal (2) G-P(sol) polarization free energy of solvation -36.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds