Wall clock time and date at job start Wed Apr 1 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20756 * 120.00310 * 2 1 4 4 C 1.50704 * 119.99966 * 179.97438 * 2 1 3 5 5 H 1.09005 * 109.47191 * 36.92130 * 4 2 1 6 6 N 1.46499 * 109.46869 * 156.91433 * 4 2 1 7 7 C 1.34769 * 120.00548 * 275.00150 * 6 4 2 8 8 O 1.21292 * 119.99937 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00424 * 180.02562 * 7 6 4 10 10 N 1.46898 * 109.46943 * 178.03479 * 9 7 6 11 11 C 1.46900 * 111.00261 * 287.31201 * 10 9 7 12 12 C 1.50701 * 109.47416 * 293.93401 * 11 10 9 13 13 H 1.08001 * 119.99757 * 4.55930 * 12 11 10 14 14 C 1.37871 * 120.00258 * 184.56244 * 12 11 10 15 15 N 1.31514 * 119.99999 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99758 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46697 * 90.00598 * 16 14 12 18 18 H 1.48501 * 109.46934 * 210.00319 * 16 14 12 19 19 H 1.48493 * 109.47158 * 330.00189 * 16 14 12 20 20 C 1.46904 * 110.99552 * 163.36524 * 10 9 7 21 21 C 1.50702 * 109.46862 * 189.99977 * 20 10 9 22 22 C 1.38231 * 119.61728 * 95.02289 * 21 20 10 23 23 C 1.38634 * 119.15585 * 179.74930 * 22 21 20 24 24 C 1.38668 * 118.42179 * 0.46423 * 23 22 21 25 25 C 1.38182 * 119.16559 * 359.51216 * 24 23 22 26 26 N 1.31857 * 119.61769 * 274.99342 * 21 20 10 27 27 C 1.52997 * 109.47001 * 276.91785 * 4 2 1 28 28 C 1.53006 * 109.46785 * 178.20815 * 27 4 2 29 29 C 1.52998 * 109.47412 * 298.20466 * 27 4 2 30 30 H 1.09002 * 109.47281 * 245.03141 * 1 2 3 31 31 H 1.08997 * 109.47107 * 5.03165 * 1 2 3 32 32 H 1.09000 * 109.46973 * 125.03620 * 1 2 3 33 33 H 0.97003 * 119.99468 * 95.00217 * 6 4 2 34 34 H 1.09004 * 109.47094 * 58.03485 * 9 7 6 35 35 H 1.08994 * 109.46711 * 298.03494 * 9 7 6 36 36 H 1.09003 * 109.46777 * 53.92969 * 11 10 9 37 37 H 1.08995 * 109.47275 * 173.93228 * 11 10 9 38 38 H 0.97001 * 119.99406 * 179.97438 * 15 14 12 39 39 H 1.08992 * 109.47522 * 69.99758 * 20 10 9 40 40 H 1.09002 * 109.47277 * 309.99522 * 20 10 9 41 41 H 1.07991 * 120.42402 * 359.94642 * 22 21 20 42 42 H 1.08005 * 120.78391 * 180.22966 * 23 22 21 43 43 H 1.08007 * 120.41994 * 179.78278 * 24 23 22 44 44 H 1.07997 * 119.61931 * 180.25085 * 25 24 23 45 45 H 1.08997 * 109.46948 * 58.21132 * 27 4 2 46 46 H 1.09000 * 109.47020 * 65.08773 * 28 27 4 47 47 H 1.08995 * 109.46901 * 185.08659 * 28 27 4 48 48 H 1.09000 * 109.47144 * 305.08808 * 28 27 4 49 49 H 1.09002 * 109.47229 * 300.00546 * 29 27 4 50 50 H 1.09001 * 109.46726 * 60.00031 * 29 27 4 51 51 H 1.08991 * 109.47521 * 180.02562 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7307 -2.0309 -0.6165 6 7 3.6050 -1.0929 -0.5411 7 6 3.8078 -1.1251 -1.8731 8 8 2.8770 -1.3292 -2.6235 9 6 5.1910 -0.9073 -2.4302 10 7 5.1556 -1.0369 -3.8931 11 6 4.9873 -2.4402 -4.2934 12 6 6.2090 -3.2267 -3.8938 13 1 6.9963 -2.7509 -3.3279 14 6 6.3219 -4.5537 -4.2507 15 7 7.3879 -5.2401 -3.9015 16 14 4.9599 -5.3767 -5.2291 17 1 5.2297 -5.2205 -6.6810 18 1 4.9087 -6.8211 -4.8877 19 1 3.6589 -4.7430 -4.8962 20 6 6.3600 -0.4566 -4.5021 21 6 6.1818 -0.3841 -5.9968 22 6 5.7248 0.7857 -6.5744 23 6 5.5694 0.8435 -7.9508 24 6 5.8714 -0.2855 -8.6971 25 6 6.3239 -1.4194 -8.0499 26 7 6.4641 -1.4370 -6.7386 27 6 2.3650 -1.8330 1.4328 28 6 3.0909 -3.1799 1.4281 29 6 3.1477 -0.8349 2.2884 30 1 -0.3634 -0.4338 0.9316 31 1 -0.3633 1.0237 -0.0901 32 1 -0.3633 -0.5900 -0.8414 33 1 4.3494 -0.9293 0.0590 34 1 5.8710 -1.6518 -2.0159 35 1 5.5377 0.0906 -2.1621 36 1 4.1095 -2.8563 -3.7988 37 1 4.8563 -2.4965 -5.3740 38 1 7.4670 -6.1738 -4.1524 39 1 7.2221 -1.0813 -4.2689 40 1 6.5202 0.5463 -4.1063 41 1 5.4948 1.6446 -5.9616 42 1 5.2177 1.7453 -8.4299 43 1 5.7587 -0.2773 -9.7712 44 1 6.5651 -2.3015 -8.6243 45 1 1.3649 -1.9607 1.8468 46 1 4.1202 -3.0368 1.0991 47 1 3.0860 -3.5987 2.4344 48 1 2.5837 -3.8637 0.7475 49 1 4.1478 -0.7072 1.8743 50 1 2.6306 0.1246 2.2917 51 1 3.2225 -1.2111 3.3086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081159896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:11 Heat of formation + Delta-G solvation = -50.778315 kcal Electronic energy + Delta-G solvation = -31687.157762 eV Core-core repulsion = 27586.109069 eV Total energy + Delta-G solvation = -4101.048693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.57654 -41.04385 -39.95854 -38.06973 -37.22880 -34.51698 -34.00237 -33.25909 -32.68426 -31.55976 -30.18145 -28.94591 -28.09854 -27.37293 -25.82450 -24.26524 -23.67629 -22.07885 -21.95080 -21.21310 -20.20648 -19.24321 -18.10719 -17.62471 -17.46937 -17.10397 -17.03418 -16.58399 -16.45633 -16.15400 -16.09321 -15.86956 -15.31687 -15.22835 -15.16927 -14.74816 -14.50184 -14.19725 -14.17711 -14.09714 -13.66015 -13.44228 -13.37720 -13.20654 -13.03646 -12.92115 -12.89691 -12.86451 -12.74238 -12.37055 -12.22958 -12.19696 -11.87390 -11.85258 -11.79712 -11.65324 -11.15284 -10.81523 -10.71966 -10.63261 -10.06860 -9.86607 -9.83499 -8.96884 -8.25686 -6.22711 0.28375 0.54031 0.95233 1.27814 1.29687 1.41811 1.72214 2.09147 2.35616 2.91167 3.12144 3.12907 3.44359 3.65355 3.69002 3.88280 3.91541 3.96924 4.07154 4.09905 4.22026 4.30061 4.34530 4.37640 4.47366 4.52231 4.54283 4.62655 4.66971 4.69554 4.77635 4.80089 4.91009 4.93542 4.95972 5.01777 5.10958 5.11591 5.13722 5.19979 5.34390 5.35246 5.37371 5.40234 5.46026 5.54456 5.93022 6.06083 6.24916 6.31936 6.51246 6.60037 6.76101 7.32843 7.34120 7.41604 8.90329 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010144 B = 0.003658 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.711211 B = 7651.757866 C = 9332.607152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.348 3.652 3 O -0.485 6.485 4 C 0.095 3.905 5 H 0.102 0.898 6 N -0.708 5.708 7 C 0.522 3.478 8 O -0.563 6.563 9 C 0.039 3.961 10 N -0.513 5.513 11 C 0.179 3.821 12 C -0.512 4.512 13 H 0.047 0.953 14 C 0.030 3.970 15 N -0.942 5.942 16 Si 0.925 3.075 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.270 1.270 20 C 0.106 3.894 21 C 0.122 3.878 22 C -0.160 4.160 23 C -0.078 4.078 24 C -0.171 4.171 25 C 0.067 3.933 26 N -0.501 5.501 27 C -0.084 4.084 28 C -0.147 4.147 29 C -0.152 4.152 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.411 0.589 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.012 0.988 37 H 0.018 0.982 38 H 0.262 0.738 39 H 0.038 0.962 40 H 0.107 0.893 41 H 0.153 0.847 42 H 0.170 0.830 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.119 0.881 46 H 0.045 0.955 47 H 0.080 0.920 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.051 0.949 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.918 12.490 7.174 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.224 3.776 3 O -0.360 6.360 4 C -0.011 4.011 5 H 0.120 0.880 6 N -0.363 5.363 7 C 0.310 3.690 8 O -0.441 6.441 9 C -0.092 4.092 10 N -0.236 5.236 11 C 0.051 3.949 12 C -0.551 4.551 13 H 0.065 0.935 14 C -0.168 4.168 15 N -0.583 5.583 16 Si 0.751 3.249 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.195 1.195 20 C -0.022 4.022 21 C -0.015 4.015 22 C -0.181 4.181 23 C -0.104 4.104 24 C -0.191 4.191 25 C -0.090 4.090 26 N -0.211 5.211 27 C -0.102 4.102 28 C -0.204 4.204 29 C -0.209 4.209 30 H 0.146 0.854 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.030 0.970 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.125 0.875 41 H 0.170 0.830 42 H 0.188 0.812 43 H 0.183 0.817 44 H 0.170 0.830 45 H 0.137 0.863 46 H 0.064 0.936 47 H 0.099 0.901 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.286 12.235 6.868 18.006 hybrid contribution 0.617 -0.824 -0.566 1.175 sum -10.669 11.411 6.302 16.845 Atomic orbital electron populations 1.22355 0.91453 1.05482 1.06471 1.25550 0.93719 0.89861 0.68506 1.90368 1.73047 1.35743 1.36836 1.21722 0.84371 0.96732 0.98295 0.87977 1.45720 1.10655 1.73565 1.06331 1.20817 0.91181 0.74790 0.82248 1.90625 1.45237 1.49118 1.59082 1.21895 0.93563 1.03794 0.89961 1.62134 1.36267 1.18853 1.06391 1.19817 0.94544 0.85060 0.95456 1.21588 1.04199 0.95516 1.33832 0.93475 1.25415 0.96907 0.98134 0.96310 1.70023 1.29717 1.09595 1.48986 0.86057 0.81060 0.77666 0.80118 1.19812 1.20693 1.19480 1.20953 0.92186 0.99893 0.89173 1.21209 0.94822 0.89583 0.95924 1.22190 1.00112 0.99033 0.96732 1.21961 0.95794 0.99493 0.93164 1.22422 1.00396 0.93597 1.02709 1.23097 0.96597 0.99132 0.90201 1.67615 1.15252 1.30283 1.07933 1.21318 1.02962 0.95797 0.90162 1.21829 1.00149 0.95610 1.02861 1.21904 0.99989 0.98343 1.00695 0.85443 0.90038 0.88404 0.75150 0.91420 0.86040 0.97011 0.96434 0.92935 0.94371 0.87516 0.82952 0.81234 0.81740 0.83013 0.86333 0.93582 0.90081 0.93212 0.92954 0.92986 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.09 10.25 71.24 0.73 -2.36 16 2 C 0.35 8.16 5.47 29.10 0.16 8.32 16 3 O -0.48 -14.62 16.83 -1.44 -0.02 -14.64 16 4 C 0.09 2.22 2.03 44.25 0.09 2.31 16 5 H 0.10 2.66 7.58 -2.38 -0.02 2.64 16 6 N -0.71 -20.08 4.02 -446.09 -1.79 -21.87 16 7 C 0.52 19.62 7.44 87.66 0.65 20.27 16 8 O -0.56 -25.43 14.68 -3.07 -0.05 -25.48 16 9 C 0.04 1.46 5.32 85.56 0.46 1.92 16 10 N -0.51 -22.44 4.30 -909.94 -3.92 -26.36 16 11 C 0.18 9.40 3.53 85.56 0.30 9.70 16 12 C -0.51 -29.63 7.88 25.60 0.20 -29.43 16 13 H 0.05 2.91 6.22 -2.91 -0.02 2.89 16 14 C 0.03 1.82 5.47 84.65 0.46 2.28 16 15 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 16 Si 0.92 48.50 27.38 68.60 1.88 50.38 16 17 H -0.27 -14.05 7.11 99.48 0.71 -13.35 16 18 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 19 H -0.27 -14.22 6.67 99.48 0.66 -13.55 16 20 C 0.11 4.21 5.04 85.56 0.43 4.64 16 21 C 0.12 4.78 5.69 42.55 0.24 5.02 16 22 C -0.16 -4.81 9.72 22.36 0.22 -4.59 16 23 C -0.08 -1.92 10.18 22.47 0.23 -1.69 16 24 C -0.17 -4.48 10.11 22.36 0.23 -4.25 16 25 C 0.07 2.35 11.18 84.67 0.95 3.30 16 26 N -0.50 -21.91 8.90 -183.88 -1.64 -23.55 16 27 C -0.08 -1.32 2.75 -10.79 -0.03 -1.35 16 28 C -0.15 -2.67 8.98 71.98 0.65 -2.02 16 29 C -0.15 -2.28 8.75 71.98 0.63 -1.65 16 30 H 0.13 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.41 9.84 6.67 -92.71 -0.62 9.22 16 34 H 0.07 2.76 6.53 -2.38 -0.02 2.75 16 35 H 0.12 3.61 7.79 -2.39 -0.02 3.59 16 36 H 0.01 0.67 5.86 -2.39 -0.01 0.66 16 37 H 0.02 0.99 5.65 -2.39 -0.01 0.97 16 38 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.04 1.78 6.24 -2.39 -0.01 1.76 16 40 H 0.11 3.31 7.75 -2.39 -0.02 3.29 16 41 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 42 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 43 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 44 H 0.15 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.04 0.99 7.73 -2.39 -0.02 0.97 16 47 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.05 0.86 6.42 -2.39 -0.02 0.84 16 50 H 0.05 0.86 6.94 -2.39 -0.02 0.85 16 51 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -84.91 409.66 1.63 -83.27 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.28 Total: 27.09 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.59 Total: 10.42 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -7.05 Total: -131.04 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.07 Total: -40.12 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.88 Total: 50.38 kcal Total: -84.91 1.63 -83.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081159896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.496 kcal (2) G-P(sol) polarization free energy of solvation -84.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds