Wall clock time and date at job start Wed Apr 1 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 C 1.52997 * 109.47355 * 240.00011 * 2 1 3 5 5 C 1.50706 * 109.46917 * 119.99982 * 2 1 3 6 6 O 1.21274 * 119.99828 * 359.97438 * 5 2 1 7 7 N 1.34773 * 119.99595 * 180.02562 * 5 2 1 8 8 C 1.46504 * 119.99712 * 180.02562 * 7 5 2 9 9 C 1.52999 * 109.47033 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47332 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99499 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00377 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99928 * 359.97438 * 12 10 9 14 14 C 1.50698 * 109.46886 * 270.00390 * 13 12 10 15 15 H 1.07994 * 120.00600 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99702 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00037 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47136 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46951 * 120.00311 * 18 16 14 21 21 H 1.48498 * 109.47372 * 240.00176 * 18 16 14 22 22 C 1.46504 * 119.99689 * 179.97438 * 12 10 9 23 23 C 1.50707 * 109.46935 * 90.00167 * 22 12 10 24 24 C 1.38227 * 119.62059 * 95.01845 * 23 22 12 25 25 C 1.38627 * 119.15702 * 179.74122 * 24 23 22 26 26 C 1.38669 * 118.42389 * 0.47826 * 25 24 23 27 27 C 1.38186 * 119.16143 * 359.49762 * 26 25 24 28 28 N 1.31856 * 119.61137 * 274.99275 * 23 22 12 29 29 H 1.09001 * 109.47245 * 300.00454 * 1 2 3 30 30 H 1.09002 * 109.46806 * 60.00124 * 1 2 3 31 31 H 1.08996 * 109.47417 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47019 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47142 * 299.99670 * 3 2 1 34 34 H 1.09007 * 109.47228 * 60.00034 * 3 2 1 35 35 H 1.09005 * 109.46883 * 300.00098 * 4 2 1 36 36 H 1.09003 * 109.47015 * 59.99669 * 4 2 1 37 37 H 1.08998 * 109.47502 * 180.02562 * 4 2 1 38 38 H 0.97002 * 120.00768 * 359.97438 * 7 5 2 39 39 H 1.09000 * 109.47326 * 60.00298 * 8 7 5 40 40 H 1.09001 * 109.46743 * 299.99770 * 8 7 5 41 41 H 1.08996 * 109.47417 * 59.99812 * 9 8 7 42 42 H 1.09001 * 109.47245 * 299.99556 * 9 8 7 43 43 H 1.08998 * 109.47243 * 30.00215 * 13 12 10 44 44 H 1.08997 * 109.46980 * 150.00484 * 13 12 10 45 45 H 0.97000 * 120.00213 * 179.97438 * 17 16 14 46 46 H 1.08997 * 109.47679 * 329.99634 * 22 12 10 47 47 H 1.09003 * 109.46652 * 209.99594 * 22 12 10 48 48 H 1.07998 * 120.41916 * 359.95342 * 24 23 22 49 49 H 1.08008 * 120.78688 * 180.22921 * 25 24 23 50 50 H 1.08002 * 120.42244 * 179.78279 * 26 25 24 51 51 H 1.07996 * 119.61757 * 180.25243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1709 2.0290 7 7 3.3573 -0.8331 1.4440 8 6 3.8457 -1.5242 2.6400 9 6 5.3757 -1.5241 2.6400 10 6 5.8780 -2.2356 3.8698 11 8 5.0898 -2.6968 4.6680 12 7 7.2031 -2.3584 4.0834 13 6 8.1551 -1.8007 3.1196 14 6 8.4820 -2.8395 2.0780 15 1 8.0267 -3.8174 2.1290 16 6 9.3626 -2.5414 1.0598 17 7 9.9176 -1.3507 0.9979 18 14 9.7685 -3.8293 -0.2311 19 1 9.0187 -5.0771 0.0618 20 1 9.3826 -3.3238 -1.5730 21 1 11.2264 -4.1105 -0.2085 22 6 7.6913 -3.0495 5.2793 23 6 7.8594 -4.5166 4.9781 24 6 9.0972 -4.9980 4.5950 25 6 9.2421 -6.3501 4.3255 26 6 8.1295 -7.1694 4.4423 27 6 6.9241 -6.6167 4.8309 28 7 6.8240 -5.3262 5.0838 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 3.9878 -0.4645 0.8056 39 1 3.4828 -2.5521 2.6393 40 1 3.4819 -1.0110 3.5301 41 1 5.7390 -0.4965 2.6404 42 1 5.7391 -2.0376 1.7499 43 1 7.7146 -0.9283 2.6369 44 1 9.0675 -1.5069 3.6386 45 1 10.5375 -1.1411 0.2818 46 1 6.9732 -2.9249 6.0897 47 1 8.6514 -2.6273 5.5764 48 1 9.9414 -4.3298 4.5099 49 1 10.1981 -6.7550 4.0277 50 1 8.2051 -8.2270 4.2367 51 1 6.0538 -7.2487 4.9282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103439323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:39 Heat of formation + Delta-G solvation = -55.371446 kcal Electronic energy + Delta-G solvation = -31102.057979 eV Core-core repulsion = 27000.810113 eV Total energy + Delta-G solvation = -4101.247866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.11346 -39.85682 -38.81819 -35.74672 -35.27465 -34.81808 -32.87303 -32.01045 -31.48651 -30.28870 -27.68780 -27.51112 -27.25776 -26.22452 -24.10905 -23.15674 -22.82841 -22.10738 -21.37275 -19.54660 -18.18535 -16.88048 -16.71526 -16.62351 -16.34967 -15.83418 -15.56921 -15.45152 -15.21643 -15.03439 -14.64110 -14.38080 -14.09195 -13.78650 -13.74924 -13.37135 -13.12649 -12.85140 -12.57145 -12.49371 -12.47870 -12.32656 -12.22191 -11.98918 -11.85480 -11.78170 -11.59924 -11.36654 -11.29794 -11.11262 -11.04840 -11.02224 -10.94963 -10.76582 -10.26277 -9.83306 -9.59732 -9.44013 -9.09456 -8.96912 -8.87237 -8.69245 -8.49828 -7.79264 -6.27419 -4.33553 1.50778 1.74187 2.77283 3.12384 3.21024 3.22614 3.27499 3.40782 3.89996 4.24063 4.42393 4.55530 4.63934 4.73931 4.75102 5.05846 5.07458 5.15741 5.19165 5.27354 5.39113 5.40442 5.44742 5.45386 5.51196 5.56366 5.59472 5.66141 5.72043 5.77619 5.84799 5.92644 5.93670 6.00138 6.05947 6.16102 6.16496 6.21481 6.29752 6.37165 6.53890 6.59947 6.61615 6.66693 7.06209 7.12546 7.45043 7.63806 7.68481 7.97131 8.25510 8.36076 8.50776 8.72918 8.99635 9.34807 10.79047 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.003233 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.990037 B = 8659.774290 C =10146.922755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.142 4.142 5 C 0.520 3.480 6 O -0.541 6.541 7 N -0.727 5.727 8 C 0.136 3.864 9 C -0.147 4.147 10 C 0.522 3.478 11 O -0.550 6.550 12 N -0.593 5.593 13 C 0.236 3.764 14 C -0.529 4.529 15 H 0.060 0.940 16 C 0.068 3.932 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.171 3.829 23 C 0.124 3.876 24 C -0.133 4.133 25 C -0.085 4.085 26 C -0.181 4.181 27 C 0.087 3.913 28 N -0.460 5.460 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.400 0.600 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.040 0.960 44 H 0.036 0.964 45 H 0.264 0.736 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.136 0.864 49 H 0.127 0.873 50 H 0.125 0.875 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 0.900 -1.232 6.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.198 4.198 4 C -0.199 4.199 5 C 0.305 3.695 6 O -0.418 6.418 7 N -0.378 5.378 8 C 0.013 3.987 9 C -0.187 4.187 10 C 0.310 3.690 11 O -0.428 6.428 12 N -0.324 5.324 13 C 0.116 3.884 14 C -0.568 4.568 15 H 0.078 0.922 16 C -0.135 4.135 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.047 3.953 23 C -0.015 4.015 24 C -0.153 4.153 25 C -0.111 4.111 26 C -0.201 4.201 27 C -0.070 4.070 28 N -0.169 5.169 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.235 0.765 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.154 0.846 49 H 0.145 0.855 50 H 0.143 0.857 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.756 0.804 -0.068 7.798 hybrid contribution 1.847 -1.039 -1.726 2.733 sum -5.909 -0.235 -1.794 6.180 Atomic orbital electron populations 1.21646 0.92112 1.02787 1.01836 1.20825 0.97959 0.96475 0.93825 1.21873 1.01474 0.93738 1.02747 1.21880 1.01549 1.00609 0.95893 1.20518 0.82177 0.79555 0.87204 1.90694 1.55359 1.48628 1.47094 1.46067 1.07134 1.58756 1.25871 1.21073 0.92709 0.98000 0.86932 1.21751 0.94690 1.02792 0.99434 1.20121 0.82401 0.79825 0.86698 1.90681 1.55188 1.49743 1.47233 1.48146 1.06280 1.54654 1.23367 1.19495 0.87765 0.94291 0.86826 1.21492 1.26315 0.99427 1.09567 0.92221 1.24879 0.95641 0.95317 0.97654 1.69919 1.29895 1.20015 1.33073 0.86584 0.78308 0.81973 0.81566 1.19761 1.20838 1.20833 1.20094 1.00447 0.85727 0.89024 1.21651 0.88663 0.96526 0.94694 1.21987 0.99175 0.95742 0.98417 1.21499 0.98784 0.93869 0.96957 1.22035 0.94554 1.00768 1.02789 1.22653 0.96708 0.91640 0.96042 1.67578 1.31940 1.04048 1.13354 0.91989 0.92191 0.91982 0.91891 0.91437 0.92051 0.92030 0.91434 0.91838 0.76533 0.90932 0.91018 0.88742 0.87416 0.94211 0.94585 0.92603 0.89298 0.89486 0.84597 0.85458 0.85664 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 7.76 37.16 0.29 -1.02 16 2 C -0.09 -0.93 0.87 -155.66 -0.14 -1.07 16 3 C -0.14 -1.23 8.37 37.16 0.31 -0.92 16 4 C -0.14 -1.31 8.37 37.16 0.31 -1.00 16 5 C 0.52 7.57 6.48 -10.98 -0.07 7.50 16 6 O -0.54 -10.09 15.98 5.56 0.09 -10.00 16 7 N -0.73 -10.00 5.34 -60.29 -0.32 -10.32 16 8 C 0.14 2.26 4.96 -4.04 -0.02 2.24 16 9 C -0.15 -2.49 4.37 -27.88 -0.12 -2.61 16 10 C 0.52 10.52 7.67 -10.99 -0.08 10.44 16 11 O -0.55 -12.36 15.56 5.55 0.09 -12.28 16 12 N -0.59 -11.80 2.44 -176.43 -0.43 -12.23 16 13 C 0.24 5.09 5.01 -5.20 -0.03 5.06 16 14 C -0.53 -12.64 9.13 -34.44 -0.31 -12.96 16 15 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 16 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -22.80 13.29 55.43 0.74 -22.07 16 18 Si 0.89 19.65 29.54 -169.99 -5.02 14.63 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.17 3.12 5.76 -5.19 -0.03 3.09 16 23 C 0.12 2.32 6.36 -82.58 -0.53 1.80 16 24 C -0.13 -2.28 9.58 -39.44 -0.38 -2.66 16 25 C -0.08 -1.30 10.18 -39.28 -0.40 -1.70 16 26 C -0.18 -2.65 10.11 -39.44 -0.40 -3.05 16 27 C 0.09 1.43 11.18 -17.55 -0.20 1.23 16 28 N -0.46 -8.96 10.27 -9.47 -0.10 -9.06 16 29 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.06 0.52 7.56 -51.93 -0.39 0.12 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.56 7.56 -51.93 -0.39 0.17 16 38 H 0.40 4.56 7.31 -40.82 -0.30 4.26 16 39 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 40 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.09 1.46 7.40 -51.93 -0.38 1.07 16 42 H 0.11 1.92 8.00 -51.93 -0.42 1.51 16 43 H 0.04 0.87 6.44 -51.93 -0.33 0.54 16 44 H 0.04 0.81 7.89 -51.93 -0.41 0.40 16 45 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 46 H 0.09 1.64 7.42 -51.93 -0.39 1.26 16 47 H 0.09 1.37 7.79 -51.93 -0.40 0.97 16 48 H 0.14 2.24 8.06 -52.49 -0.42 1.81 16 49 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 50 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 51 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 424.21 15.07 6.39 6.39 Total: -1.00 -31.49 424.21 -8.90 -40.39 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -8.45 Total: 8.59 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.89 Total: 5.95 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.11 Total: -53.68 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.18 Total: -22.28 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -31.49 -8.90 -40.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.978 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds