Wall clock time and date at job start Wed Apr 1 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 C 1.52997 * 109.47355 * 240.00011 * 2 1 3 5 5 C 1.50706 * 109.46917 * 119.99982 * 2 1 3 6 6 O 1.21274 * 119.99828 * 359.97438 * 5 2 1 7 7 N 1.34773 * 119.99595 * 180.02562 * 5 2 1 8 8 C 1.46504 * 119.99712 * 180.02562 * 7 5 2 9 9 C 1.52999 * 109.47033 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.47332 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99499 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00377 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99928 * 359.97438 * 12 10 9 14 14 C 1.50698 * 109.46886 * 270.00390 * 13 12 10 15 15 H 1.07994 * 120.00600 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99702 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00037 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47136 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46951 * 120.00311 * 18 16 14 21 21 H 1.48498 * 109.47372 * 240.00176 * 18 16 14 22 22 C 1.46504 * 119.99689 * 179.97438 * 12 10 9 23 23 C 1.50707 * 109.46935 * 90.00167 * 22 12 10 24 24 C 1.38227 * 119.62059 * 95.01845 * 23 22 12 25 25 C 1.38627 * 119.15702 * 179.74122 * 24 23 22 26 26 C 1.38669 * 118.42389 * 0.47826 * 25 24 23 27 27 C 1.38186 * 119.16143 * 359.49762 * 26 25 24 28 28 N 1.31856 * 119.61137 * 274.99275 * 23 22 12 29 29 H 1.09001 * 109.47245 * 300.00454 * 1 2 3 30 30 H 1.09002 * 109.46806 * 60.00124 * 1 2 3 31 31 H 1.08996 * 109.47417 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47019 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47142 * 299.99670 * 3 2 1 34 34 H 1.09007 * 109.47228 * 60.00034 * 3 2 1 35 35 H 1.09005 * 109.46883 * 300.00098 * 4 2 1 36 36 H 1.09003 * 109.47015 * 59.99669 * 4 2 1 37 37 H 1.08998 * 109.47502 * 180.02562 * 4 2 1 38 38 H 0.97002 * 120.00768 * 359.97438 * 7 5 2 39 39 H 1.09000 * 109.47326 * 60.00298 * 8 7 5 40 40 H 1.09001 * 109.46743 * 299.99770 * 8 7 5 41 41 H 1.08996 * 109.47417 * 59.99812 * 9 8 7 42 42 H 1.09001 * 109.47245 * 299.99556 * 9 8 7 43 43 H 1.08998 * 109.47243 * 30.00215 * 13 12 10 44 44 H 1.08997 * 109.46980 * 150.00484 * 13 12 10 45 45 H 0.97000 * 120.00213 * 179.97438 * 17 16 14 46 46 H 1.08997 * 109.47679 * 329.99634 * 22 12 10 47 47 H 1.09003 * 109.46652 * 209.99594 * 22 12 10 48 48 H 1.07998 * 120.41916 * 359.95342 * 24 23 22 49 49 H 1.08008 * 120.78688 * 180.22921 * 25 24 23 50 50 H 1.08002 * 120.42244 * 179.78279 * 26 25 24 51 51 H 1.07996 * 119.61757 * 180.25243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1709 2.0290 7 7 3.3573 -0.8331 1.4440 8 6 3.8457 -1.5242 2.6400 9 6 5.3757 -1.5241 2.6400 10 6 5.8780 -2.2356 3.8698 11 8 5.0898 -2.6968 4.6680 12 7 7.2031 -2.3584 4.0834 13 6 8.1551 -1.8007 3.1196 14 6 8.4820 -2.8395 2.0780 15 1 8.0267 -3.8174 2.1290 16 6 9.3626 -2.5414 1.0598 17 7 9.9176 -1.3507 0.9979 18 14 9.7685 -3.8293 -0.2311 19 1 9.0187 -5.0771 0.0618 20 1 9.3826 -3.3238 -1.5730 21 1 11.2264 -4.1105 -0.2085 22 6 7.6913 -3.0495 5.2793 23 6 7.8594 -4.5166 4.9781 24 6 9.0972 -4.9980 4.5950 25 6 9.2421 -6.3501 4.3255 26 6 8.1295 -7.1694 4.4423 27 6 6.9241 -6.6167 4.8309 28 7 6.8240 -5.3262 5.0838 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 3.9878 -0.4645 0.8056 39 1 3.4828 -2.5521 2.6393 40 1 3.4819 -1.0110 3.5301 41 1 5.7390 -0.4965 2.6404 42 1 5.7391 -2.0376 1.7499 43 1 7.7146 -0.9283 2.6369 44 1 9.0675 -1.5069 3.6386 45 1 10.5375 -1.1411 0.2818 46 1 6.9732 -2.9249 6.0897 47 1 8.6514 -2.6273 5.5764 48 1 9.9414 -4.3298 4.5099 49 1 10.1981 -6.7550 4.0277 50 1 8.2051 -8.2270 4.2367 51 1 6.0538 -7.2487 4.9282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103439323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:38 Heat of formation + Delta-G solvation = -74.149696 kcal Electronic energy + Delta-G solvation = -31102.872265 eV Core-core repulsion = 27000.810113 eV Total energy + Delta-G solvation = -4102.062152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.40347 -41.12562 -40.31500 -36.93774 -36.62697 -36.24417 -34.64024 -33.35236 -32.88973 -31.63022 -29.38725 -28.20953 -28.13994 -27.64319 -25.46858 -24.72407 -24.24365 -23.32114 -22.69906 -20.74057 -19.66540 -18.65291 -18.14045 -17.80048 -17.64995 -17.16459 -16.95961 -16.82800 -16.66107 -16.42617 -16.03387 -15.87582 -15.12195 -15.04173 -14.76330 -14.64269 -14.37974 -14.26536 -14.03020 -13.93791 -13.77842 -13.46905 -13.30276 -13.09382 -13.05541 -12.97341 -12.84695 -12.75151 -12.63819 -12.61874 -12.45131 -12.40647 -12.02763 -11.89996 -11.84385 -11.66790 -10.89195 -10.72736 -10.65507 -10.52778 -10.31047 -10.16982 -9.85234 -9.43731 -8.16043 -6.26468 0.22979 0.47890 1.37666 1.44346 1.51801 1.60885 1.77853 1.99683 2.39233 2.51604 3.07593 3.15561 3.47327 3.57022 3.76453 3.82907 3.88430 3.93163 3.97471 4.06082 4.07855 4.27209 4.28799 4.32649 4.49055 4.56216 4.64020 4.71660 4.73738 4.83169 4.83434 4.84475 4.90143 4.93405 4.95202 4.95896 4.99287 5.03142 5.22168 5.26482 5.29171 5.33487 5.34602 5.34827 5.39671 5.70757 5.84762 5.88609 6.11916 6.50134 6.59141 6.85868 7.20622 7.20994 7.33986 7.47186 8.89540 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.003233 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.990037 B = 8659.774290 C =10146.922755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.140 4.140 5 C 0.513 3.487 6 O -0.588 6.588 7 N -0.716 5.716 8 C 0.152 3.848 9 C -0.132 4.132 10 C 0.514 3.486 11 O -0.578 6.578 12 N -0.592 5.592 13 C 0.250 3.750 14 C -0.523 4.523 15 H 0.041 0.959 16 C 0.035 3.965 17 N -0.913 5.913 18 Si 0.938 3.062 19 H -0.281 1.281 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.168 3.832 23 C 0.102 3.898 24 C -0.145 4.145 25 C -0.088 4.088 26 C -0.170 4.170 27 C 0.071 3.929 28 N -0.499 5.499 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.414 0.586 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.039 0.961 44 H 0.029 0.971 45 H 0.266 0.734 46 H 0.079 0.921 47 H 0.106 0.894 48 H 0.138 0.862 49 H 0.158 0.842 50 H 0.164 0.836 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.251 0.708 -3.257 6.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.085 4.085 3 C -0.196 4.196 4 C -0.198 4.198 5 C 0.301 3.699 6 O -0.468 6.468 7 N -0.368 5.368 8 C 0.027 3.973 9 C -0.172 4.172 10 C 0.302 3.698 11 O -0.459 6.459 12 N -0.322 5.322 13 C 0.129 3.871 14 C -0.562 4.562 15 H 0.059 0.941 16 C -0.166 4.166 17 N -0.553 5.553 18 Si 0.765 3.235 19 H -0.206 1.206 20 H -0.205 1.205 21 H -0.204 1.204 22 C 0.044 3.956 23 C -0.037 4.037 24 C -0.165 4.165 25 C -0.114 4.114 26 C -0.190 4.190 27 C -0.086 4.086 28 N -0.209 5.209 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.252 0.748 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.125 0.875 48 H 0.155 0.845 49 H 0.175 0.825 50 H 0.182 0.818 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.854 0.628 -2.112 7.200 hybrid contribution 1.569 -1.060 -1.047 2.164 sum -5.285 -0.432 -3.159 6.173 Atomic orbital electron populations 1.21666 0.91947 1.02021 1.02677 1.20883 0.98063 0.97395 0.92132 1.21898 1.01942 0.92106 1.03649 1.21907 1.01866 1.00053 0.95939 1.21411 0.81712 0.78808 0.87945 1.90671 1.56451 1.50677 1.49048 1.45948 1.07514 1.58149 1.25180 1.20703 0.92342 0.96578 0.87704 1.21639 0.94639 1.03379 0.97564 1.20631 0.82293 0.79616 0.87242 1.90664 1.55728 1.50991 1.48468 1.48141 1.06032 1.54523 1.23524 1.19240 0.87637 0.93705 0.86491 1.21458 1.25893 0.98869 1.10011 0.94116 1.25352 0.95673 0.96545 0.98989 1.69976 1.30497 1.21069 1.33756 0.85813 0.77987 0.79822 0.79869 1.20627 1.20504 1.20428 1.20221 1.01014 0.86292 0.88071 1.21637 0.89376 0.96430 0.96236 1.22092 0.98581 0.97014 0.98843 1.21924 1.00409 0.93128 0.95945 1.22428 0.93327 1.02565 1.00636 1.23141 0.98518 0.91021 0.95951 1.67524 1.32874 1.05659 1.14798 0.93318 0.89108 0.93600 0.91191 0.88879 0.92841 0.93231 0.88787 0.91362 0.74824 0.93649 0.92416 0.86701 0.87903 0.94278 0.95300 0.92429 0.90284 0.87542 0.84462 0.82479 0.81810 0.81561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.76 71.98 0.56 -1.92 16 2 C -0.08 -1.63 0.87 -52.93 -0.05 -1.67 16 3 C -0.14 -2.09 8.37 71.98 0.60 -1.48 16 4 C -0.14 -2.28 8.37 71.98 0.60 -1.67 16 5 C 0.51 15.05 6.48 87.66 0.57 15.61 16 6 O -0.59 -22.83 15.98 -3.01 -0.05 -22.88 16 7 N -0.72 -19.65 5.34 -463.05 -2.47 -22.12 16 8 C 0.15 5.17 4.96 86.38 0.43 5.60 16 9 C -0.13 -4.53 4.37 29.85 0.13 -4.40 16 10 C 0.51 21.22 7.67 87.66 0.67 21.89 16 11 O -0.58 -27.02 15.56 -3.05 -0.05 -27.07 16 12 N -0.59 -23.89 2.44 -830.49 -2.03 -25.92 16 13 C 0.25 10.73 5.01 85.63 0.43 11.16 16 14 C -0.52 -24.76 9.13 25.60 0.23 -24.53 16 15 H 0.04 2.08 7.81 -2.91 -0.02 2.06 16 16 C 0.04 1.69 5.46 84.66 0.46 2.15 16 17 N -0.91 -45.78 13.29 21.45 0.28 -45.50 16 18 Si 0.94 39.34 29.54 68.60 2.03 41.37 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 22 C 0.17 6.26 5.76 85.63 0.49 6.75 16 23 C 0.10 3.85 6.36 42.55 0.27 4.12 16 24 C -0.14 -4.89 9.58 22.36 0.21 -4.68 16 25 C -0.09 -2.51 10.18 22.47 0.23 -2.28 16 26 C -0.17 -4.55 10.11 22.36 0.23 -4.32 16 27 C 0.07 2.26 11.18 84.67 0.95 3.21 16 28 N -0.50 -19.67 10.27 -183.88 -1.89 -21.56 16 29 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.07 0.96 7.56 -2.39 -0.02 0.94 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.04 7.56 -2.39 -0.02 1.03 16 38 H 0.41 8.95 7.31 -92.71 -0.68 8.27 16 39 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 40 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16 41 H 0.11 3.46 7.40 -2.39 -0.02 3.44 16 42 H 0.10 3.67 8.00 -2.39 -0.02 3.65 16 43 H 0.04 1.69 6.44 -2.39 -0.02 1.68 16 44 H 0.03 1.29 7.89 -2.39 -0.02 1.27 16 45 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 46 H 0.08 3.06 7.42 -2.39 -0.02 3.04 16 47 H 0.11 3.41 7.79 -2.39 -0.02 3.39 16 48 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 49 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 50 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 51 H 0.17 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -69.20 424.21 3.09 -66.11 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.24 Total: 34.02 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 7.02 Total: 23.54 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -6.10 Total: -115.09 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.10 Total: -49.95 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -69.20 3.09 -66.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103439323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.040 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds