Wall clock time and date at job start Wed Apr 1 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46506 * 2 1 4 4 O 1.42898 * 109.47070 * 119.99468 * 2 1 3 5 5 C 1.52991 * 109.47184 * 239.99931 * 2 1 3 6 6 N 1.46897 * 109.47215 * 302.05372 * 5 2 1 7 7 C 1.46904 * 111.00479 * 274.15494 * 6 5 2 8 8 C 1.53230 * 109.34369 * 172.74614 * 7 6 5 9 9 N 1.47080 * 108.52554 * 53.82925 * 8 7 6 10 10 C 1.34777 * 120.88430 * 128.79019 * 9 8 7 11 11 O 1.21575 * 119.99809 * 185.72790 * 10 9 8 12 12 N 1.34772 * 119.99694 * 5.72835 * 10 9 8 13 13 C 1.39248 * 119.99777 * 187.95421 * 12 10 9 14 14 C 1.39478 * 119.83092 * 39.26746 * 13 12 10 15 15 C 1.36376 * 120.16749 * 179.75447 * 14 13 12 16 16 C 1.40863 * 119.82857 * 0.52090 * 15 14 13 17 17 C 1.41155 * 120.16800 * 179.71398 * 16 15 14 18 18 H 1.07996 * 120.00538 * 210.01053 * 17 16 15 19 19 C 1.39901 * 119.99874 * 30.01655 * 17 16 15 20 20 N 1.30888 * 119.99663 * 9.15376 * 19 17 16 21 21 Si 1.86788 * 120.00098 * 189.15854 * 19 17 16 22 22 H 1.48497 * 109.47442 * 89.99689 * 21 19 17 23 23 H 1.48505 * 109.47327 * 209.99664 * 21 19 17 24 24 H 1.48500 * 109.47116 * 329.99460 * 21 19 17 25 25 C 1.40871 * 119.67134 * 359.73493 * 16 15 14 26 26 C 1.36377 * 119.83184 * 0.02562 * 25 16 15 27 27 C 1.47088 * 118.23600 * 308.81830 * 9 8 7 28 28 C 1.46900 * 111.00213 * 149.85084 * 6 5 2 29 29 H 1.08998 * 109.47353 * 299.99938 * 1 2 3 30 30 H 1.08996 * 109.47197 * 60.00734 * 1 2 3 31 31 H 1.09008 * 109.46721 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46322 * 184.84765 * 3 2 1 33 33 H 1.08998 * 109.47000 * 304.84331 * 3 2 1 34 34 H 1.08996 * 109.47368 * 64.85200 * 3 2 1 35 35 H 0.96702 * 114.00060 * 43.43113 * 4 2 1 36 36 H 1.08997 * 109.47826 * 62.05605 * 5 2 1 37 37 H 1.09006 * 109.46943 * 182.05831 * 5 2 1 38 38 H 1.09004 * 109.48832 * 292.70706 * 7 6 5 39 39 H 1.09005 * 109.49198 * 52.78230 * 7 6 5 40 40 H 1.09002 * 109.62803 * 294.11992 * 8 7 6 41 41 H 1.09003 * 109.62971 * 173.53624 * 8 7 6 42 42 H 0.96995 * 120.00279 * 7.96221 * 12 10 9 43 43 H 1.08003 * 119.91831 * 0.02562 * 14 13 12 44 44 H 1.08002 * 120.08715 * 180.24975 * 15 14 13 45 45 H 0.96998 * 119.99485 * 180.02562 * 20 19 17 46 46 H 1.08000 * 120.09003 * 179.97438 * 25 16 15 47 47 H 1.07996 * 119.91825 * 179.97438 * 26 25 16 48 48 H 1.08994 * 109.62326 * 291.47360 * 27 9 8 49 49 H 1.08999 * 109.78897 * 170.98344 * 27 9 8 50 50 H 1.08997 * 109.49512 * 307.21932 * 28 6 5 51 51 H 1.09001 * 109.49099 * 67.29460 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.0400 -0.7212 -1.2492 6 7 1.5103 -2.0911 -1.2742 7 6 2.3656 -3.0007 -0.5001 8 6 1.6883 -4.3715 -0.3993 9 7 1.3599 -4.8315 -1.7571 10 6 1.7268 -6.0576 -2.1798 11 8 1.5400 -6.3831 -3.3362 12 7 2.3006 -6.9228 -1.3204 13 6 2.8294 -8.1225 -1.7896 14 6 3.5147 -8.1509 -3.0041 15 6 4.0397 -9.3211 -3.4676 16 6 3.8789 -10.5052 -2.7218 17 6 4.4141 -11.7215 -3.1978 18 1 3.9332 -12.6565 -2.9509 19 6 5.5676 -11.7159 -3.9893 20 7 6.2517 -10.6104 -4.1411 21 14 6.1314 -13.2860 -4.8296 22 1 5.5090 -13.3786 -6.1747 23 1 7.6098 -13.2699 -4.9684 24 1 5.7236 -14.4579 -4.0138 25 6 3.1808 -10.4696 -1.4987 26 6 2.6657 -9.2910 -1.0456 27 6 0.6212 -3.9178 -2.6418 28 6 1.3405 -2.5648 -2.6544 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1265 1.4438 -0.0869 33 1 1.6074 1.9808 -0.8434 34 1 1.7493 1.9307 0.9302 35 1 1.5326 -1.4918 1.3696 36 1 1.7072 -0.1867 -2.1388 37 1 3.1295 -0.7533 -1.2309 38 1 3.3289 -3.1068 -0.9991 39 1 2.5164 -2.5949 0.5003 40 1 0.7748 -4.2861 0.1893 41 1 2.3670 -5.0813 0.0737 42 1 2.3452 -6.7099 -0.3752 43 1 3.6337 -7.2429 -3.5767 44 1 4.5736 -9.3407 -4.4062 45 1 7.0513 -10.6065 -4.6902 46 1 3.0532 -11.3735 -0.9216 47 1 2.1299 -9.2622 -0.1084 48 1 -0.3948 -3.7888 -2.2688 49 1 0.5913 -4.3260 -3.6521 50 1 0.7479 -1.8430 -3.2164 51 1 2.3181 -2.6769 -3.1232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109156989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:13 Heat of formation + Delta-G solvation = -38.346642 kcal Electronic energy + Delta-G solvation = -30751.485704 eV Core-core repulsion = 26650.976089 eV Total energy + Delta-G solvation = -4100.509615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.47970 -39.34786 -37.80857 -36.89839 -34.49957 -34.40179 -32.93543 -32.58051 -31.23241 -29.50454 -29.05339 -27.97845 -27.65775 -25.18955 -24.41572 -23.83459 -21.84231 -21.18733 -20.64808 -20.48750 -19.06490 -18.12151 -17.26912 -17.14949 -16.49440 -15.99076 -15.58652 -15.47933 -15.17649 -15.03177 -14.81709 -14.39538 -14.12535 -13.92422 -13.82553 -13.58757 -13.15061 -12.84174 -12.79918 -12.60188 -12.53211 -12.28483 -12.04558 -11.98411 -11.94135 -11.74548 -11.60219 -11.54279 -11.38623 -11.31032 -11.10094 -11.02902 -10.87493 -10.65754 -10.25548 -9.87197 -9.68769 -9.43400 -9.20636 -8.89512 -8.80210 -8.43051 -7.50308 -6.90902 -6.64536 -4.29046 2.66112 2.87776 3.09062 3.10448 3.13812 3.17347 3.49518 3.69544 3.85924 3.98110 4.24293 4.48616 4.58503 4.63505 4.70670 4.74149 4.82033 4.90482 5.02824 5.10994 5.17839 5.26227 5.30150 5.36520 5.41159 5.46527 5.58529 5.62171 5.67964 5.70751 5.73232 5.80436 5.88841 5.97922 6.17393 6.36684 6.46637 6.61391 6.67952 6.82758 6.91560 7.07150 7.14291 7.30426 7.35194 7.35791 7.64297 7.84474 8.02911 8.09308 8.29134 8.44300 8.66869 8.93332 8.94871 9.12450 10.28149 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.001930 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.115866 B =14506.018753 C =14616.953094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 C -0.142 4.142 4 O -0.562 6.562 5 C 0.031 3.969 6 N -0.535 5.535 7 C 0.032 3.968 8 C 0.116 3.884 9 N -0.637 5.637 10 C 0.700 3.300 11 O -0.575 6.575 12 N -0.669 5.669 13 C 0.021 3.979 14 C -0.087 4.087 15 C -0.145 4.145 16 C 0.104 3.896 17 C -0.460 4.460 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.804 5.804 21 Si 0.912 3.088 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.209 4.209 26 C -0.108 4.108 27 C 0.137 3.863 28 C 0.041 3.959 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.378 0.622 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.389 0.611 43 H 0.094 0.906 44 H 0.122 0.878 45 H 0.279 0.721 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.097 0.903 50 H 0.085 0.915 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 21.295 8.016 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.094 3.906 3 C -0.200 4.200 4 O -0.370 6.370 5 C -0.098 4.098 6 N -0.260 5.260 7 C -0.097 4.097 8 C -0.008 4.008 9 N -0.377 5.377 10 C 0.402 3.598 11 O -0.452 6.452 12 N -0.316 5.316 13 C -0.072 4.072 14 C -0.107 4.107 15 C -0.165 4.165 16 C 0.101 3.899 17 C -0.490 4.490 18 H 0.095 0.905 19 C -0.145 4.145 20 N -0.430 5.430 21 Si 0.737 3.263 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.229 4.229 26 C -0.129 4.129 27 C 0.013 3.987 28 C -0.087 4.087 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.227 0.773 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.224 0.776 43 H 0.112 0.888 44 H 0.140 0.860 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.108 0.892 48 H 0.086 0.914 49 H 0.115 0.885 50 H 0.103 0.897 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.482 21.642 7.252 24.349 hybrid contribution 0.846 -0.923 -0.298 1.287 sum -7.636 20.718 6.954 23.150 Atomic orbital electron populations 1.22383 0.94985 1.03515 1.01873 1.21187 0.93366 0.91709 0.84367 1.21781 1.01809 0.93823 1.02553 1.86536 1.62920 1.41630 1.45963 1.22801 0.98467 0.89553 0.98950 1.61934 1.49062 1.01629 1.13336 1.22790 0.94537 0.92709 0.99634 1.21693 1.00077 0.94775 0.84278 1.47302 1.61322 1.14399 1.14634 1.15926 0.78400 0.80195 0.85251 1.90920 1.60488 1.76734 1.17022 1.42267 1.61064 1.18901 1.09417 1.16967 1.07017 0.83578 0.99634 1.20342 0.97189 0.97979 0.95174 1.21024 1.02667 0.91928 1.00849 1.17673 0.89291 0.93452 0.89480 1.19516 1.08380 0.93997 1.27154 0.90518 1.25898 0.96093 0.97737 0.94789 1.69817 1.13968 1.27909 1.31308 0.86250 0.77949 0.81951 0.80140 1.19410 1.20384 1.18721 1.20597 1.08615 0.95833 0.97843 1.20050 1.01739 0.91987 0.99095 1.21452 0.94161 0.87052 0.95992 1.22579 1.00200 0.97002 0.88962 0.92638 0.92056 0.90698 0.92100 0.91285 0.91659 0.77262 0.90368 0.93372 0.94059 0.88463 0.90914 0.89969 0.77588 0.88819 0.86018 0.91042 0.88560 0.89205 0.91410 0.88495 0.89694 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 8.48 37.16 0.31 -0.72 16 2 C 0.13 0.93 1.22 -90.62 -0.11 0.82 16 3 C -0.14 -0.88 8.84 37.16 0.33 -0.56 16 4 O -0.56 -4.51 11.72 -35.23 -0.41 -4.92 16 5 C 0.03 0.23 4.40 -3.83 -0.02 0.21 16 6 N -0.53 -4.33 3.62 -234.32 -0.85 -5.18 16 7 C 0.03 0.28 5.13 -3.70 -0.02 0.26 16 8 C 0.12 1.11 6.47 -3.61 -0.02 1.09 16 9 N -0.64 -8.56 3.01 -178.19 -0.54 -9.09 16 10 C 0.70 12.95 7.95 -86.92 -0.69 12.26 16 11 O -0.58 -13.20 14.01 5.30 0.07 -13.13 16 12 N -0.67 -12.20 5.12 -14.10 -0.07 -12.27 16 13 C 0.02 0.47 6.15 -83.57 -0.51 -0.05 16 14 C -0.09 -2.20 8.57 -39.79 -0.34 -2.54 16 15 C -0.14 -3.94 8.59 -39.26 -0.34 -4.27 16 16 C 0.10 2.81 5.54 -106.80 -0.59 2.22 16 17 C -0.46 -12.37 9.04 -37.85 -0.34 -12.72 16 18 H 0.08 1.97 7.86 -52.49 -0.41 1.56 16 19 C 0.07 1.82 5.27 -17.33 -0.09 1.72 16 20 N -0.80 -21.26 10.83 55.55 0.60 -20.66 16 21 Si 0.91 19.12 29.57 -169.99 -5.03 14.09 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 26 C -0.11 -2.41 9.90 -39.79 -0.39 -2.81 16 27 C 0.14 1.59 6.61 -3.60 -0.02 1.56 16 28 C 0.04 0.38 5.53 -3.70 -0.02 0.36 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.50 7.55 -51.92 -0.39 0.11 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.38 2.27 7.02 45.56 0.32 2.59 16 36 H 0.08 0.51 7.61 -51.93 -0.39 0.12 16 37 H 0.05 0.42 7.85 -51.93 -0.41 0.01 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.70 4.99 -51.93 -0.26 0.44 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.76 5.91 -51.93 -0.31 0.45 16 42 H 0.39 5.63 6.55 -40.82 -0.27 5.37 16 43 H 0.09 2.39 6.92 -52.48 -0.36 2.03 16 44 H 0.12 3.44 6.25 -52.49 -0.33 3.11 16 45 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 46 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 47 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.10 1.32 7.05 -51.93 -0.37 0.95 16 50 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 51 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -31.84 397.74 -10.85 -42.69 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.37 Total: 11.12 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -3.26 Total: -8.65 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.85 Total: -47.20 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.34 Total: -18.05 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.84 -10.85 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109156989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.346 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds